Guide to the Human Genome
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Name: NLE1 Sequence: fasta or formatted (485aa) NCBI GI: 62234461
Description:

Notchless gene homolog isoform a

Referenced in:

Nucleus and Nucleolus
WD Repeat Proteins

Other entries for this name:
alt prot [193aa] Notchless gene homolog isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         42           3
 C cysteine            1.9          9           1
 D aspartate           7.0         34           2
 E glutamate           4.1         20           1
 F phenylalanine       2.7         13           2
 G glycine             8.0         39           2
 H histidine           2.9         14           1
 I isoleucine          3.5         17           2
 K lysine              4.3         21           2
 L leucine            10.5         51           2
 M methionine          0.8          4           1
 N asparagine          1.4          7           1
 P proline             4.3         21           1
 Q glutamine           4.7         23           1
 R arginine            6.6         32           2
 S serine              9.7         47           3
 T threonine           6.0         29           2
 V valine              7.6         37           1
 W tryptophan          3.3         16           1
 Y tyrosine            1.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Notchless gene homolog isoform a 
NLE1                  0.377   Notchless gene homolog isoform b 
WDR69                 0.130   WD repeat domain 69 
PAFAH1B1              0.113   platelet-activating factor acetylhydrolase, isoform I...
WDR5                  0.111   WD repeat domain 5 
WDR5                  0.111   WD repeat domain 5 
WDR51A                0.109   WD repeat domain 51A isoform 2 
WDR51A                0.109   WD repeat domain 51A isoform 1 
WDR5B                 0.109   WD repeat domain 5B 
WDR51B                0.108   WD repeat domain 51B 
TBL1Y                 0.104   transducin beta-like 1Y 
TBL1Y                 0.104   transducin beta-like 1Y 
TBL1Y                 0.104   transducin beta-like 1Y 
TBL1XR1               0.103   transducin (beta)-like 1 X-linked receptor 1 
WDR38                 0.099   WD repeat domain 38 
TBL1X                 0.099   transducin beta-like 1X isoform b 
TBL1X                 0.099   transducin beta-like 1X isoform b 
TBL1X                 0.099   transducin beta-like 1X isoform a 
TBL1X                 0.099   transducin beta-like 1X isoform a 
WDR51A                0.091   WD repeat domain 51A isoform 3 
FBXW7                 0.091   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.091   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.091   F-box and WD repeat domain containing 7 isoform 2 [H...
GNB1                  0.089   guanine nucleotide-binding protein, beta-1 subunit [...
FBXW11                0.089   F-box and WD repeat domain containing 11 isoform C [...
FBXW11                0.089   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.089   F-box and WD repeat domain containing 11 isoform B [...
BTRC                  0.088   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.088   beta-transducin repeat containing protein isoform 1 ...
WDR86                 0.086   WD repeat domain 86 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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