Guide to the Human Genome
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Name: PRPF4 Sequence: fasta or formatted (522aa) NCBI GI: 24431950
Description:

PRP4 pre-mRNA processing factor 4 homolog

Referenced in:

Capping and Splicing
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         38           2
 C cysteine            2.3         12           1
 D aspartate           5.6         29           2
 E glutamate           7.5         39           2
 F phenylalanine       2.7         14           1
 G glycine             8.0         42           2
 H histidine           3.8         20           1
 I isoleucine          5.2         27           1
 K lysine              6.5         34           2
 L leucine             9.2         48           2
 M methionine          1.7          9           1
 N asparagine          3.6         19           2
 P proline             3.8         20           1
 Q glutamine           2.7         14           2
 R arginine            6.3         33           2
 S serine              7.7         40           2
 T threonine           5.9         31           2
 V valine              5.2         27           2
 W tryptophan          2.5         13           1
 Y tyrosine            2.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRP4 pre-mRNA processing factor 4 homolog 
WDR69                 0.130   WD repeat domain 69 
WDR5B                 0.106   WD repeat domain 5B 
WDR5                  0.105   WD repeat domain 5 
WDR5                  0.105   WD repeat domain 5 
WDR51B                0.101   WD repeat domain 51B 
PAFAH1B1              0.100   platelet-activating factor acetylhydrolase, isoform I...
FBXW7                 0.092   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.092   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.092   F-box and WD repeat domain containing 7 isoform 2 [H...
GNB4                  0.091   guanine nucleotide-binding protein, beta-4 subunit [...
GNB2                  0.089   guanine nucleotide-binding protein, beta-2 subunit [...
GNB1                  0.087   guanine nucleotide-binding protein, beta-1 subunit [...
KATNB1                0.086   katanin p80 subunit B 1 
SPAG16                0.086   sperm associated antigen 16 isoform 1 
PRPF19                0.085   PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom...
GNB3                  0.083   guanine nucleotide-binding protein, beta-3 subunit [H...
TAF5                  0.083   TBP-associated factor 5 
WDR38                 0.081   WD repeat domain 38 
PLRG1                 0.081   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
WDR51A                0.080   WD repeat domain 51A isoform 2 
WDR51A                0.080   WD repeat domain 51A isoform 1 
TBL1XR1               0.077   transducin (beta)-like 1 X-linked receptor 1 
WDR51A                0.076   WD repeat domain 51A isoform 3 
SNRNP40               0.075   WD repeat domain 57 (U5 snRNP specific) 
GNB5                  0.074   guanine nucleotide-binding protein, beta-5 subunit is...
GNB5                  0.074   guanine nucleotide-binding protein, beta-5 subunit i...
WDR61                 0.072   WD repeat domain 61 
TBL1X                 0.071   transducin beta-like 1X isoform b 
TBL1X                 0.071   transducin beta-like 1X isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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