ATG16L1 2737

Name: ATG16L1	Sequence: fasta or formatted (588aa)		NCBI GI: 124256478
Description: APG16 autophagy 16-like isoform 2		Referenced in: Additional Membrane Functions Small RNAs in RNA Processing WD Repeat Proteins
Other entries for this name: alt prot [607aa] APG16 autophagy 16-like isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.8 46 2 C cysteine 2.0 12 1 D aspartate 7.0 41 3 E glutamate 8.2 48 2 F phenylalanine 2.9 17 1 G glycine 5.1 30 2 H histidine 2.7 16 1 I isoleucine 4.4 26 2 K lysine 6.5 38 2 L leucine 10.0 59 2 M methionine 1.5 9 1 N asparagine 3.6 21 2 P proline 2.6 15 1 Q glutamine 4.8 28 1 R arginine 7.3 43 3 S serine 8.8 52 3 T threonine 5.3 31 2 V valine 6.5 38 2 W tryptophan 1.9 11 1 Y tyrosine 1.2 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 APG16 autophagy 16-like isoform 2 ATG16L1 0.990 APG16 autophagy 16-like isoform 1 ATG16L2 0.334 ATG16 autophagy related 16-like 2 SNRNP40 0.096 WD repeat domain 57 (U5 snRNP specific) WDR51A 0.079 WD repeat domain 51A isoform 3 WDR51A 0.079 WD repeat domain 51A isoform 2 WDR51A 0.079 WD repeat domain 51A isoform 1 WDR51B 0.079 WD repeat domain 51B WDR5B 0.078 WD repeat domain 5B WDR5 0.075 WD repeat domain 5 WDR5 0.075 WD repeat domain 5 WDR69 0.071 WD repeat domain 69 TBL3 0.060 transducin beta-like 3 KATNB1 0.057 katanin p80 subunit B 1 PAFAH1B1 0.056 platelet-activating factor acetylhydrolase, isoform I... SPAG16 0.056 sperm associated antigen 16 isoform 1 WDR38 0.055 WD repeat domain 38 SMU1 0.054 smu-1 suppressor of mec-8 and unc-52 homolog TBL1X 0.053 transducin beta-like 1X isoform b TBL1X 0.053 transducin beta-like 1X isoform b TBL1X 0.053 transducin beta-like 1X isoform a TBL1X 0.053 transducin beta-like 1X isoform a FBXW7 0.051 F-box and WD repeat domain containing 7 isoform 3 [H... FBXW7 0.051 F-box and WD repeat domain containing 7 isoform 1 [H... FBXW7 0.051 F-box and WD repeat domain containing 7 isoform 2 [H... TBL1XR1 0.051 transducin (beta)-like 1 X-linked receptor 1 TBL1Y 0.050 transducin beta-like 1Y TBL1Y 0.050 transducin beta-like 1Y TBL1Y 0.050 transducin beta-like 1Y WDR47 0.049 WD repeat domain 47 isoform 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.