Guide to the Human Genome
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Name: ATG16L1 Sequence: fasta or formatted (588aa) NCBI GI: 124256478
Description:

APG16 autophagy 16-like isoform 2

Referenced in:

Additional Membrane Functions
Small RNAs in RNA Processing
WD Repeat Proteins

Other entries for this name:
alt prot [607aa] APG16 autophagy 16-like isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         46           2
 C cysteine            2.0         12           1
 D aspartate           7.0         41           3
 E glutamate           8.2         48           2
 F phenylalanine       2.9         17           1
 G glycine             5.1         30           2
 H histidine           2.7         16           1
 I isoleucine          4.4         26           2
 K lysine              6.5         38           2
 L leucine            10.0         59           2
 M methionine          1.5          9           1
 N asparagine          3.6         21           2
 P proline             2.6         15           1
 Q glutamine           4.8         28           1
 R arginine            7.3         43           3
 S serine              8.8         52           3
 T threonine           5.3         31           2
 V valine              6.5         38           2
 W tryptophan          1.9         11           1
 Y tyrosine            1.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   APG16 autophagy 16-like isoform 2 
ATG16L1               0.990   APG16 autophagy 16-like isoform 1 
ATG16L2               0.334   ATG16 autophagy related 16-like 2 
SNRNP40               0.096   WD repeat domain 57 (U5 snRNP specific) 
WDR51A                0.079   WD repeat domain 51A isoform 3 
WDR51A                0.079   WD repeat domain 51A isoform 2 
WDR51A                0.079   WD repeat domain 51A isoform 1 
WDR51B                0.079   WD repeat domain 51B 
WDR5B                 0.078   WD repeat domain 5B 
WDR5                  0.075   WD repeat domain 5 
WDR5                  0.075   WD repeat domain 5 
WDR69                 0.071   WD repeat domain 69 
TBL3                  0.060   transducin beta-like 3 
KATNB1                0.057   katanin p80 subunit B 1 
PAFAH1B1              0.056   platelet-activating factor acetylhydrolase, isoform I...
SPAG16                0.056   sperm associated antigen 16 isoform 1 
WDR38                 0.055   WD repeat domain 38 
SMU1                  0.054   smu-1 suppressor of mec-8 and unc-52 homolog 
TBL1X                 0.053   transducin beta-like 1X isoform b 
TBL1X                 0.053   transducin beta-like 1X isoform b 
TBL1X                 0.053   transducin beta-like 1X isoform a 
TBL1X                 0.053   transducin beta-like 1X isoform a 
FBXW7                 0.051   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.051   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.051   F-box and WD repeat domain containing 7 isoform 2 [H...
TBL1XR1               0.051   transducin (beta)-like 1 X-linked receptor 1 
TBL1Y                 0.050   transducin beta-like 1Y 
TBL1Y                 0.050   transducin beta-like 1Y 
TBL1Y                 0.050   transducin beta-like 1Y 
WDR47                 0.049   WD repeat domain 47 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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