HFE 12602

Name: HFE	Sequence: fasta or formatted (334aa)		NCBI GI: 21040347
Description: hemochromatosis protein isoform 6 precursor		Referenced in: HLA and Related Proteins Iron, Copper, and Arsenic Metabolism
Other entries for this name: alt prot [242aa] hemochromatosis protein isoform 3 precursor alt prot [256aa] hemochromatosis protein isoform 4 precursor alt prot [260aa] hemochromatosis protein isoform 7 precursor alt prot [246aa] hemochromatosis protein isoform 8 precursor alt prot [325aa] hemochromatosis protein isoform 9 precursor alt prot [168aa] hemochromatosis protein isoform 10 precursor alt prot [76aa] hemochromatosis protein isoform 11 precursor alt prot [348aa] hemochromatosis protein isoform 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.1 17 2 C cysteine 1.5 5 1 D aspartate 5.4 18 2 E glutamate 6.9 23 2 F phenylalanine 3.3 11 1 G glycine 7.2 24 1 H histidine 3.3 11 1 I isoleucine 4.8 16 2 K lysine 3.3 11 1 L leucine 12.6 42 4 M methionine 3.0 10 1 N asparagine 2.1 7 1 P proline 5.4 18 2 Q glutamine 6.9 23 2 R arginine 6.9 23 2 S serine 5.4 18 2 T threonine 4.5 15 2 V valine 5.7 19 2 W tryptophan 3.3 11 1 Y tyrosine 3.6 12 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 hemochromatosis protein isoform 6 precursor HFE 0.987 hemochromatosis protein isoform 1 precursor HFE 0.896 hemochromatosis protein isoform 9 precursor HFE 0.656 hemochromatosis protein isoform 8 precursor HFE 0.642 hemochromatosis protein isoform 7 precursor HFE 0.364 hemochromatosis protein isoform 3 precursor HFE 0.362 hemochromatosis protein isoform 10 precursor HFE 0.362 hemochromatosis protein isoform 4 precursor MR1 0.271 major histocompatibility complex, class I-related [Ho... HLA-A 0.259 major histocompatibility complex, class I, A precurs... HLA-B 0.255 major histocompatibility complex, class I, B precurs... LOC652614 0.250 PREDICTED: similar to MHC class I antigen HLA-C 0.241 major histocompatibility complex, class I, C precurs... HLA-F 0.240 major histocompatibility complex, class I, F isofor... HLA-F 0.240 major histocompatibility complex, class I, F isofor... HLA-G 0.240 major histocompatibility complex, class I, G precurso... HLA-E 0.237 major histocompatibility complex, class I, E precurs... AZGP1 0.235 alpha-2-glycoprotein 1, zinc MICB 0.152 MHC class I polypeptide-related sequence B MICA 0.142 MHC class I polypeptide-related sequence A FCGRT 0.136 Fc fragment of IgG, receptor, transporter, alpha [H... FCGRT 0.136 Fc fragment of IgG, receptor, transporter, alpha [Hom... HFE 0.110 hemochromatosis protein isoform 11 precursor HLA-F 0.100 major histocompatibility complex, class I, F isofor... CD1D 0.088 CD1D antigen precursor LOC100294318 0.079 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.077 PREDICTED: similar to major histocompatibility comp... HLA-DQB1 0.075 major histocompatibility complex, class II, DQ beta... HLA-DRB4 0.075 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.075 PREDICTED: major histocompatibility complex, class ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.