HFE 12606

Name: HFE	Sequence: fasta or formatted (168aa)		NCBI GI: 21040355
Description: hemochromatosis protein isoform 10 precursor		Referenced in: HLA and Related Proteins Iron, Copper, and Arsenic Metabolism
Other entries for this name: alt prot [242aa] hemochromatosis protein isoform 3 precursor alt prot [256aa] hemochromatosis protein isoform 4 precursor alt prot [334aa] hemochromatosis protein isoform 6 precursor alt prot [260aa] hemochromatosis protein isoform 7 precursor alt prot [246aa] hemochromatosis protein isoform 8 precursor alt prot [325aa] hemochromatosis protein isoform 9 precursor alt prot [76aa] hemochromatosis protein isoform 11 precursor alt prot [348aa] hemochromatosis protein isoform 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 9 1 C cysteine 1.2 2 1 D aspartate 3.0 5 1 E glutamate 4.8 8 2 F phenylalanine 2.4 4 1 G glycine 8.3 14 1 H histidine 2.4 4 2 I isoleucine 7.1 12 2 K lysine 4.2 7 1 L leucine 13.7 23 4 M methionine 3.0 5 1 N asparagine 1.8 3 1 P proline 8.3 14 2 Q glutamine 5.4 9 1 R arginine 6.0 10 1 S serine 3.6 6 2 T threonine 6.0 10 2 V valine 8.9 15 2 W tryptophan 1.8 3 1 Y tyrosine 3.0 5 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 hemochromatosis protein isoform 10 precursor HFE 0.852 hemochromatosis protein isoform 9 precursor HFE 0.852 hemochromatosis protein isoform 7 precursor HFE 0.852 hemochromatosis protein isoform 4 precursor HFE 0.852 hemochromatosis protein isoform 1 precursor HFE 0.776 hemochromatosis protein isoform 3 precursor HFE 0.767 hemochromatosis protein isoform 8 precursor HFE 0.767 hemochromatosis protein isoform 6 precursor LOC652614 0.297 PREDICTED: similar to MHC class I antigen HLA-B 0.293 major histocompatibility complex, class I, B precurs... HLA-C 0.290 major histocompatibility complex, class I, C precurs... HLA-F 0.287 major histocompatibility complex, class I, F isofor... HLA-F 0.287 major histocompatibility complex, class I, F isofor... HLA-E 0.268 major histocompatibility complex, class I, E precurs... HLA-A 0.262 major histocompatibility complex, class I, A precurs... HLA-G 0.243 major histocompatibility complex, class I, G precurso... HFE 0.233 hemochromatosis protein isoform 11 precursor MICA 0.196 MHC class I polypeptide-related sequence A MR1 0.192 major histocompatibility complex, class I-related [Ho... MICB 0.183 MHC class I polypeptide-related sequence B AZGP1 0.170 alpha-2-glycoprotein 1, zinc LOC100294036 0.132 PREDICTED: similar to HLA class II histocompatibili... LOC100294275 0.132 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.132 PREDICTED: similar to major histocompatibility comp... HLA-DRB5 0.132 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.132 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.132 PREDICTED: major histocompatibility complex, class ... LOC100294468 0.132 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.132 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.132 PREDICTED: similar to HLA class II histocompatibili... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.