Guide to the Human Genome
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Name: HLA-F Sequence: fasta or formatted (442aa) NCBI GI: 149158702
Description:

major histocompatibility complex, class I, F isoform 1 precursor

Referenced in:

HLA and Related Proteins

Other entries for this name:
alt prot [346aa] major histocompatibility complex, class I, F isoform 2 precursor
alt prot [254aa] major histocompatibility complex, class I, F isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         38           3
 C cysteine            1.1          5           1
 D aspartate           4.5         20           2
 E glutamate           6.6         29           2
 F phenylalanine       4.1         18           2
 G glycine             7.9         35           1
 H histidine           2.9         13           2
 I isoleucine          3.2         14           1
 K lysine              2.3         10           2
 L leucine            11.1         49           5
 M methionine          1.8          8           1
 N asparagine          2.0          9           1
 P proline             4.5         20           2
 Q glutamine           5.2         23           1
 R arginine            8.4         37           2
 S serine              6.1         27           2
 T threonine           5.9         26           2
 V valine              6.1         27           3
 W tryptophan          3.6         16           2
 Y tyrosine            4.1         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   major histocompatibility complex, class I, F isofor... 
HLA-F                 0.774   major histocompatibility complex, class I, F isofor...
HLA-A                 0.621   major histocompatibility complex, class I, A precurs...
HLA-B                 0.609   major histocompatibility complex, class I, B precurs...
HLA-G                 0.593   major histocompatibility complex, class I, G precurso...
HLA-C                 0.590   major histocompatibility complex, class I, C precurs...
HLA-E                 0.556   major histocompatibility complex, class I, E precurs...
LOC652614             0.485   PREDICTED: similar to MHC class I antigen 
HLA-F                 0.444   major histocompatibility complex, class I, F isofor...
MR1                   0.221   major histocompatibility complex, class I-related [Ho...
HFE                   0.199   hemochromatosis protein isoform 1 precursor 
AZGP1                 0.186   alpha-2-glycoprotein 1, zinc 
HFE                   0.184   hemochromatosis protein isoform 9 precursor 
HFE                   0.181   hemochromatosis protein isoform 6 precursor 
HFE                   0.158   hemochromatosis protein isoform 7 precursor 
HFE                   0.139   hemochromatosis protein isoform 8 precursor 
FCGRT                 0.129   Fc fragment of IgG, receptor, transporter, alpha [H...
FCGRT                 0.129   Fc fragment of IgG, receptor, transporter, alpha [Hom...
MICA                  0.129   MHC class I polypeptide-related sequence A 
MICB                  0.126   MHC class I polypeptide-related sequence B 
HFE                   0.102   hemochromatosis protein isoform 10 precursor 
HFE                   0.102   hemochromatosis protein isoform 4 precursor 
HFE                   0.093   hemochromatosis protein isoform 3 precursor 
CD1A                  0.064   CD1A antigen precursor 
LOC100294318          0.056   PREDICTED: similar to major histocompatibility comp...
LOC100294318          0.056   PREDICTED: similar to major histocompatibility comp...
HLA-DMB               0.054   major histocompatibility complex, class II, DM beta p...
LOC100133583          0.053   PREDICTED: similar to major histocompatibility comp...
HLA-DPB1              0.051   major histocompatibility complex, class II, DP beta ...
CD1D                  0.048   CD1D antigen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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