HFE 12600

Name: HFE	Sequence: fasta or formatted (242aa)		NCBI GI: 21040341
Description: hemochromatosis protein isoform 3 precursor		Referenced in: HLA and Related Proteins Iron, Copper, and Arsenic Metabolism
Other entries for this name: alt prot [256aa] hemochromatosis protein isoform 4 precursor alt prot [334aa] hemochromatosis protein isoform 6 precursor alt prot [260aa] hemochromatosis protein isoform 7 precursor alt prot [246aa] hemochromatosis protein isoform 8 precursor alt prot [325aa] hemochromatosis protein isoform 9 precursor alt prot [168aa] hemochromatosis protein isoform 10 precursor alt prot [76aa] hemochromatosis protein isoform 11 precursor alt prot [348aa] hemochromatosis protein isoform 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.5 11 1 C cysteine 0.8 2 1 D aspartate 4.5 11 2 E glutamate 5.4 13 2 F phenylalanine 4.1 10 1 G glycine 7.4 18 1 H histidine 3.3 8 1 I isoleucine 5.8 14 2 K lysine 3.3 8 1 L leucine 12.8 31 4 M methionine 3.7 9 1 N asparagine 2.1 5 1 P proline 5.8 14 2 Q glutamine 5.8 14 1 R arginine 6.2 15 2 S serine 6.6 16 2 T threonine 4.5 11 2 V valine 7.0 17 2 W tryptophan 2.9 7 1 Y tyrosine 3.3 8 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 hemochromatosis protein isoform 3 precursor HFE 0.981 hemochromatosis protein isoform 4 precursor HFE 0.605 hemochromatosis protein isoform 7 precursor HFE 0.605 hemochromatosis protein isoform 8 precursor HFE 0.520 hemochromatosis protein isoform 10 precursor HFE 0.520 hemochromatosis protein isoform 9 precursor HFE 0.520 hemochromatosis protein isoform 1 precursor HFE 0.516 hemochromatosis protein isoform 6 precursor LOC652614 0.180 PREDICTED: similar to MHC class I antigen HLA-F 0.175 major histocompatibility complex, class I, F isofor... HLA-F 0.175 major histocompatibility complex, class I, F isofor... HLA-B 0.175 major histocompatibility complex, class I, B precurs... HLA-C 0.175 major histocompatibility complex, class I, C precurs... HLA-E 0.159 major histocompatibility complex, class I, E precurs... HLA-A 0.159 major histocompatibility complex, class I, A precurs... HFE 0.156 hemochromatosis protein isoform 11 precursor HLA-G 0.146 major histocompatibility complex, class I, G precurso... MICA 0.116 MHC class I polypeptide-related sequence A MR1 0.114 major histocompatibility complex, class I-related [Ho... MICB 0.106 MHC class I polypeptide-related sequence B AZGP1 0.101 alpha-2-glycoprotein 1, zinc LOC100294275 0.091 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.091 PREDICTED: similar to major histocompatibility comp... HLA-DRB5 0.091 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.089 major histocompatibility complex, class II, DR beta ... LOC100294036 0.089 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB4 0.089 PREDICTED: major histocompatibility complex, class ... LOC100294468 0.089 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.089 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.089 PREDICTED: similar to HLA class II histocompatibili... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.