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Search of human proteins with 113408483
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113408483 PREDICTED: hypothetical protein [Homo sapiens]
(151 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169160624 PREDICTED: hypothetical protein [Homo sapiens] 313 3e-86
gi|113412136 PREDICTED: hypothetical protein [Homo sapiens] 313 3e-86
gi|113408483 PREDICTED: hypothetical protein [Homo sapiens] 313 3e-86
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-05
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 45 3e-05
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 45 3e-05
gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo ... 39 0.001
gi|169162742 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 39 0.002
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 38 0.004
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 38 0.004
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 37 0.008
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 37 0.008
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 36 0.011
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 36 0.011
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 36 0.011
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 36 0.014
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 36 0.014
gi|154091020 leucine-rich repeats and calponin homology (CH) dom... 36 0.014
gi|154146231 DMRT-like family A2 [Homo sapiens] 36 0.014
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens] 35 0.024
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ... 35 0.024
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 35 0.024
gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens] 35 0.032
gi|29570782 additional sex combs like 1 [Homo sapiens] 35 0.032
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 34 0.041
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 34 0.041
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 34 0.041
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 34 0.041
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 34 0.041
>gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 313 bits (803), Expect = 3e-86
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 60
MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP
Sbjct: 134 MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 193
Query: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 120
RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ
Sbjct: 194 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 253
Query: 121 VKPRTLGPKNLTGTPCLMKLRTARCASSESG 151
VKPRTLGPKNLTGTPCLMKLRTARCASSESG
Sbjct: 254 VKPRTLGPKNLTGTPCLMKLRTARCASSESG 284
>gi|113412136 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 313 bits (803), Expect = 3e-86
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 60
MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP
Sbjct: 1 MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 60
Query: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 120
RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ
Sbjct: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 120
Query: 121 VKPRTLGPKNLTGTPCLMKLRTARCASSESG 151
VKPRTLGPKNLTGTPCLMKLRTARCASSESG
Sbjct: 121 VKPRTLGPKNLTGTPCLMKLRTARCASSESG 151
>gi|113408483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 313 bits (803), Expect = 3e-86
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 60
MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP
Sbjct: 1 MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 60
Query: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 120
RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ
Sbjct: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 120
Query: 121 VKPRTLGPKNLTGTPCLMKLRTARCASSESG 151
VKPRTLGPKNLTGTPCLMKLRTARCASSESG
Sbjct: 121 VKPRTLGPKNLTGTPCLMKLRTARCASSESG 151
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 45.4 bits (106), Expect = 2e-05
Identities = 44/146 (30%), Positives = 55/146 (37%), Gaps = 8/146 (5%)
Query: 3 PSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRG 62
P PGG +G A GG G G ++RA GA RP G A S P L R G
Sbjct: 26 PGPGGGEGAAAGGGGGGLGSGGRSAQRRAGAGA---RRPIGAAPSVGPGGELQGWGRKSG 82
Query: 63 RCAPDGAQAGVGASRLRR----RRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVP 118
C P G + G +LRR RR + P AQ + AP+ A
Sbjct: 83 -CRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQTAVRRRRRRAPSPRGAGWREGAGA 141
Query: 119 GQVKPRTLGPKNLTGTPCLMKLRTAR 144
G+ P T+ P + R R
Sbjct: 142 GRGTPATMAGGEWAAEPLHLPQRGRR 167
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 44.7 bits (104), Expect = 3e-05
Identities = 41/128 (32%), Positives = 51/128 (39%), Gaps = 8/128 (6%)
Query: 3 PSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRG 62
P PGG +G A GG G G ++RA GA RP G A S P L R G
Sbjct: 26 PGPGGGEGAAAGGGGGGLGSGGRSAQRRAGAGA---RRPIGAAPSVGPGGELQGWGRKSG 82
Query: 63 RCAPDGAQAGVGASRLRR----RRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVP 118
C P G + G +LRR RR + P AQ + AP+ A
Sbjct: 83 -CRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQTAVRRRRRRAPSPRGAGWREGAGA 141
Query: 119 GQVKPRTL 126
G+ P T+
Sbjct: 142 GRGTPATM 149
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 44.7 bits (104), Expect = 3e-05
Identities = 41/128 (32%), Positives = 51/128 (39%), Gaps = 8/128 (6%)
Query: 3 PSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRG 62
P PGG +G A GG G G ++RA GA RP G A S P L R G
Sbjct: 26 PGPGGGEGAAAGGGGGGLGSGGRSAQRRAGAGA---RRPIGAAPSVGPGGELQGWGRKSG 82
Query: 63 RCAPDGAQAGVGASRLRR----RRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVP 118
C P G + G +LRR RR + P AQ + AP+ A
Sbjct: 83 -CRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQTAVRRRRRRAPSPRGAGWREGAGA 141
Query: 119 GQVKPRTL 126
G+ P T+
Sbjct: 142 GRGTPATM 149
>gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo
sapiens]
Length = 262
Score = 39.3 bits (90), Expect = 0.001
Identities = 43/150 (28%), Positives = 54/150 (36%), Gaps = 36/150 (24%)
Query: 16 GGARAGGGEALTR-----KRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQ 70
GG A G A T +R RP +SP+ LL P RG C +
Sbjct: 70 GGLMAAGQAARTPVPDADRRQSAVTDATQRPAAAESSPVWTGLLQRGPHDRGACGNTARR 129
Query: 71 AGVGASRLR----------RRRAPSGT-------------------LNGPYAQDKHGLNQ 101
G RLR RRR SG L GP+A+ HG N+
Sbjct: 130 LLPGGGRLRSPRDPAWESGRRRPASGVRVESGVLPVPGPRGSRLSKLGGPHARSPHG-NR 188
Query: 102 VHAPAGDALTEVRTAVPGQVKPRTLGPKNL 131
V AL + TA + K + LGP+ L
Sbjct: 189 VPQARSPALRSLETAARWR-KKQPLGPRRL 217
>gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 38.9 bits (89), Expect = 0.002
Identities = 42/135 (31%), Positives = 53/135 (39%), Gaps = 9/135 (6%)
Query: 16 GGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGA 75
GG R GG+ ++ + RGG GDR GA P LLA P A A G+G
Sbjct: 100 GGGR--GGQDISLRARRGGTRTGDR---GAELTRPQSLLARGLGPNWLAAA-AANQGLGR 153
Query: 76 SRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKN-LTGT 134
R + R P +L A + N V G G +P GP+ L G
Sbjct: 154 GRDQPRPGPLPSLRAQEAGRRG--NAVGGVTGTGSRLHAPGARGSQRPSARGPRGPLPGL 211
Query: 135 PCLMKLRTARCASSE 149
ARCA+SE
Sbjct: 212 AAWCYRPRARCAASE 226
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 38.9 bits (89), Expect = 0.002
Identities = 33/96 (34%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 3 PSPGGKDGGAFIWGGARAGGGEALTRKRARGGAV-----PGDRPGGG-------AASPLP 50
PSP G G WG + GG R A GG P D+P AA+ P
Sbjct: 300 PSPSGGSG----WGSPQRNGGSG-QRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAP 354
Query: 51 APLLASRPRPRGRCAPD----GAQAGVGASRLRRRR 82
P + P R AP G +A GA R RRRR
Sbjct: 355 TPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRR 390
Score = 26.9 bits (58), Expect = 6.6
Identities = 36/136 (26%), Positives = 50/136 (36%), Gaps = 14/136 (10%)
Query: 3 PSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLP-------APLLA 55
PSP +D A A G E+ + + A G R GGA + A
Sbjct: 341 PSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSA 400
Query: 56 SRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNG---PYAQDKHGLNQVHAPAGDALTE 112
S PR RGR P A + L R R+ S + +G P + G + H G E
Sbjct: 401 SAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKE 460
Query: 113 VRTAVPGQVKPRTLGP 128
P + +P + P
Sbjct: 461 ----RPPRARPASTSP 472
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 37.7 bits (86), Expect = 0.004
Identities = 40/117 (34%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 10 GGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGA 69
G A +WG G R RGG PG A LL R G C GA
Sbjct: 55 GPALLWGV----GAARRWRSGCRGGG-----PGASRGVLGLARLLGLWARGPGSCRC-GA 104
Query: 70 QAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTL 126
AG GA RL R R P G +A D+ AP GD +R A G + R L
Sbjct: 105 FAGPGAPRLPRARFPGGPAAAAWAGDEAWRRGPAAPPGDK-GRLRPAAAGLPEARKL 160
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 37.7 bits (86), Expect = 0.004
Identities = 36/129 (27%), Positives = 47/129 (36%), Gaps = 16/129 (12%)
Query: 2 GPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGG--AASPLPAPLLASRPR 59
GP P GK G GG+++ R+ G G P GG P P P P
Sbjct: 276 GPPPPGKPQGPPPQGGSKSRSS------RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 329
Query: 60 PRGRCAPDG--------AQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALT 111
P+G P G G S+ R R+P G GP Q+ + PAG
Sbjct: 330 PQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQ 389
Query: 112 EVRTAVPGQ 120
+ + GQ
Sbjct: 390 QPQAPPAGQ 398
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 2 GPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASP------------L 49
G GG A +W GA GGGE R A A P P AA +
Sbjct: 175 GKGEGGGKESAVLWKGAE-GGGEKGNRNMA---AAPLGDPAREAAQAQTGLRRRRPLELV 230
Query: 50 PAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNG 90
P P L S P PR RC ++ VGA+ + A G
Sbjct: 231 PRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARG 271
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 2 GPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASP------------L 49
G GG A +W GA GGGE R A A P P AA +
Sbjct: 175 GKGEGGGKESAVLWKGAE-GGGEKGNRNMA---AAPLGDPAREAAQAQTGLRRRRPLELV 230
Query: 50 PAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNG 90
P P L S P PR RC ++ VGA+ + A G
Sbjct: 231 PRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARG 271
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 36.2 bits (82), Expect = 0.011
Identities = 39/159 (24%), Positives = 49/159 (30%), Gaps = 23/159 (14%)
Query: 3 PSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRG 62
P G+ G A GAR G+ PG G P P P +G
Sbjct: 329 PGERGRTGPAGA-AGARGNDGQ------------PGPAGPPGPVGPAGGPGFPGAPGAKG 375
Query: 63 RCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVK 122
P GA+ GA R G+ A G + + G A PG
Sbjct: 376 EAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPG 435
Query: 123 PR----------TLGPKNLTGTPCLMKLRTARCASSESG 151
PR LGPK TG P + + + E G
Sbjct: 436 PRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 474
Score = 29.3 bits (64), Expect = 1.3
Identities = 38/135 (28%), Positives = 47/135 (34%), Gaps = 7/135 (5%)
Query: 3 PSPGGKDG--GAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 60
P P G G GA GA+ GEA ++ GA PG + GA P +
Sbjct: 830 PGPAGFAGPPGADGQPGAKGEQGEA--GQKGDAGA-PGPQGPSGAPGPQGPTGVTGPKGA 886
Query: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 120
RG P GA GA+ +G P G + GD+ R PG
Sbjct: 887 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGL 946
Query: 121 VKPRTLGPKNLTGTP 135
P GP G P
Sbjct: 947 QGP--AGPPGEKGEP 959
Score = 27.3 bits (59), Expect = 5.0
Identities = 31/108 (28%), Positives = 34/108 (31%), Gaps = 11/108 (10%)
Query: 3 PSPGGKDGGAFIWGGARAGGGEALTRKRARGGA--VPGDRPGGGAASPLPAPLLASRPRP 60
P P G G G G R GA V GDR GA AP P P
Sbjct: 1019 PGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGP 1078
Query: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGD 108
G P G Q G + + PSG G+ P GD
Sbjct: 1079 AG---PTGKQGDRGEAGAQGPMGPSGPAGA------RGIQGPQGPRGD 1117
Score = 26.9 bits (58), Expect = 6.6
Identities = 38/136 (27%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 7 GKDGGAFIWG--GARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRC 64
G+ G A I G G R GE + GA PG G G P+ P A +G
Sbjct: 753 GERGAAGIAGPKGDRGDVGE-----KGPEGA-PGKDGGRGLTGPIGPPGPAGANGEKGEV 806
Query: 65 APDGAQAGVGASRLRRRR------APSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVP 118
P G GA R P+G P A + G G+A + P
Sbjct: 807 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPG---AKGEQGEAGQKGDAGAP 863
Query: 119 GQVKPR-TLGPKNLTG 133
G P GP+ TG
Sbjct: 864 GPQGPSGAPGPQGPTG 879
Score = 26.9 bits (58), Expect = 6.6
Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 5/120 (4%)
Query: 3 PSPGGKDGGAFIWGGARAGGGEALTRKRARGGAV--PGDRPGGGAASPLPAPLLASRPRP 60
P P G G G A G T G V PG G P P P + + P
Sbjct: 872 PGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP-PGP--SGKDGP 928
Query: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 120
+G G G L+ P G P G P G A +PGQ
Sbjct: 929 KGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQ 988
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 36.2 bits (82), Expect = 0.011
Identities = 39/159 (24%), Positives = 49/159 (30%), Gaps = 23/159 (14%)
Query: 3 PSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRG 62
P G+ G A GAR G+ PG G P P P +G
Sbjct: 260 PGERGRTGPAGA-AGARGNDGQ------------PGPAGPPGPVGPAGGPGFPGAPGAKG 306
Query: 63 RCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVK 122
P GA+ GA R G+ A G + + G A PG
Sbjct: 307 EAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPG 366
Query: 123 PR----------TLGPKNLTGTPCLMKLRTARCASSESG 151
PR LGPK TG P + + + E G
Sbjct: 367 PRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 405
Score = 29.3 bits (64), Expect = 1.3
Identities = 38/135 (28%), Positives = 47/135 (34%), Gaps = 7/135 (5%)
Query: 3 PSPGGKDG--GAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 60
P P G G GA GA+ GEA ++ GA PG + GA P +
Sbjct: 761 PGPAGFAGPPGADGQPGAKGEQGEA--GQKGDAGA-PGPQGPSGAPGPQGPTGVTGPKGA 817
Query: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 120
RG P GA GA+ +G P G + GD+ R PG
Sbjct: 818 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGL 877
Query: 121 VKPRTLGPKNLTGTP 135
P GP G P
Sbjct: 878 QGP--AGPPGEKGEP 890
Score = 27.3 bits (59), Expect = 5.0
Identities = 31/108 (28%), Positives = 34/108 (31%), Gaps = 11/108 (10%)
Query: 3 PSPGGKDGGAFIWGGARAGGGEALTRKRARGGA--VPGDRPGGGAASPLPAPLLASRPRP 60
P P G G G G R GA V GDR GA AP P P
Sbjct: 950 PGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGP 1009
Query: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGD 108
G P G Q G + + PSG G+ P GD
Sbjct: 1010 AG---PTGKQGDRGEAGAQGPMGPSGPAGA------RGIQGPQGPRGD 1048
Score = 26.9 bits (58), Expect = 6.6
Identities = 38/136 (27%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 7 GKDGGAFIWG--GARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRC 64
G+ G A I G G R GE + GA PG G G P+ P A +G
Sbjct: 684 GERGAAGIAGPKGDRGDVGE-----KGPEGA-PGKDGGRGLTGPIGPPGPAGANGEKGEV 737
Query: 65 APDGAQAGVGASRLRRRR------APSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVP 118
P G GA R P+G P A + G G+A + P
Sbjct: 738 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPG---AKGEQGEAGQKGDAGAP 794
Query: 119 GQVKPR-TLGPKNLTG 133
G P GP+ TG
Sbjct: 795 GPQGPSGAPGPQGPTG 810
Score = 26.9 bits (58), Expect = 6.6
Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 5/120 (4%)
Query: 3 PSPGGKDGGAFIWGGARAGGGEALTRKRARGGAV--PGDRPGGGAASPLPAPLLASRPRP 60
P P G G G A G T G V PG G P P P + + P
Sbjct: 803 PGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP-PGP--SGKDGP 859
Query: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 120
+G G G L+ P G P G P G A +PGQ
Sbjct: 860 KGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQ 919
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 36.2 bits (82), Expect = 0.011
Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 26/136 (19%)
Query: 1 MGP-SPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLP-APLLASRP 58
MGP P G G G R G E + + A G PG +PG LP AP +A P
Sbjct: 243 MGPIGPPGPQGPP----GER--GPEGIGKPGAAGA--PG-QPGIPGTKGLPGAPGIAGPP 293
Query: 59 RPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVP 118
P G P G L+ R P+G GP A+ + G PAG T P
Sbjct: 294 GPPGFGKP-------GLPGLKGERGPAGLPGGPGAKGEQG------PAGLPGKPGLTGPP 340
Query: 119 GQVKPRTLGPKNLTGT 134
G + P+ GPK + G+
Sbjct: 341 GNMGPQ--GPKGIPGS 354
Score = 27.7 bits (60), Expect = 3.9
Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 32 RGGAVPGDRPGG----GAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRL---RRRRAP 84
+G P PGG G P P P G P G + G+ L + P
Sbjct: 307 KGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGP 366
Query: 85 SGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKNLTGTP 135
+G P A+ + G +P D + PG KP GPK G P
Sbjct: 367 AGPAGYPGAKGERG-----SPGSDG----KPGYPG--KPGLDGPKGNPGLP 406
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 35.8 bits (81), Expect = 0.014
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 15 WGGARAGGGEALTRKRARGGAV--PGDRPG----GGAASPLPAPLLASRPRPRGRCAPDG 68
WG G + L RGG PG PG GA PLPAP + P P A D
Sbjct: 147 WGIVDLSGHQHLFGNLKRGGPASGPGVTPGLGAPAGAPGPLPAP-SQTPPGPPAAAACDP 205
Query: 69 AQAGVGASR----LRRRRAPSGTLNGPYAQDKHGLNQVHAPAGD 108
+ G R L RR P G + Q H + + +G+
Sbjct: 206 TKDDKGYFRRLKYLMERRFPCGVCQKSFKQSSHLVQHMLVHSGE 249
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 35.8 bits (81), Expect = 0.014
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 15 WGGARAGGGEALTRKRARGGAV--PGDRPG----GGAASPLPAPLLASRPRPRGRCAPDG 68
WG G + L RGG PG PG GA PLPAP + P P A D
Sbjct: 147 WGIVDLSGHQHLFGNLKRGGPASGPGVTPGLGAPAGAPGPLPAP-SQTPPGPPAAAACDP 205
Query: 69 AQAGVGASR----LRRRRAPSGTLNGPYAQDKHGLNQVHAPAGD 108
+ G R L RR P G + Q H + + +G+
Sbjct: 206 TKDDKGYFRRLKYLMERRFPCGVCQKSFKQSSHLVQHMLVHSGE 249
>gi|154091020 leucine-rich repeats and calponin homology (CH)
domain containing 2 [Homo sapiens]
Length = 765
Score = 35.8 bits (81), Expect = 0.014
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 6 GGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGA-ASPLPAPLLASRPRPRG 62
GG GG GG +GG T GGA G GGG P+P P L +P P G
Sbjct: 8 GGNSGGGGCGGGGSSGG--CGTAGGGGGGAGGGGGGGGGTLVVPIPVPTLFGQPFPNG 63
>gi|154146231 DMRT-like family A2 [Homo sapiens]
Length = 542
Score = 35.8 bits (81), Expect = 0.014
Identities = 45/150 (30%), Positives = 61/150 (40%), Gaps = 26/150 (17%)
Query: 4 SPGGKDGGAFIWGGARAGGGEALTRK--RARGGAVPGDRPGGGAASPLPAPLLASRPRPR 61
+P G GGA A AGG EA +K + RPG SPLP P+ +P
Sbjct: 172 APAGTGGGA-----AGAGGSEAKLQKFDLFPKTLLQAGRPG----SPLPPPV-----KP- 216
Query: 62 GRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQV 121
+PDGA +G G S R SG+ NG G + +P A E + PG
Sbjct: 217 --LSPDGADSGPGTSS-PEVRPGSGSENG------DGESFSGSPLARASKEAGGSCPGSA 267
Query: 122 KPRTLGPKNLTGTPCLMKLRTARCASSESG 151
P G ++ G+ + + A E G
Sbjct: 268 GPGGGGEEDSPGSASPLGSESGSEADKEEG 297
Score = 31.2 bits (69), Expect = 0.35
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 4 SPGGKDGGAFIWGGARAGGGEALTR-KRARGGAVPGDR-PGG-------GAASPLPAPLL 54
SP + G G + G L R + GG+ PG PGG G+ASPL +
Sbjct: 230 SPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESG 289
Query: 55 ASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGL 99
+ + G AP G+G R+R P L + + G+
Sbjct: 290 SEADKEEGEAAP---APGLGGGSGPRQRTPLDILTRVFPGHRRGV 331
>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 35.0 bits (79), Expect = 0.024
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 23 GEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRR 82
GE ++ RGG PG G+ PLPA L R + APD G G++ R +
Sbjct: 136 GEQQQQREQRGGGARAPGPGPGSRQPLPAGL---HGRRKVGSAPDRHGLGAGSAGARGNK 192
Query: 83 APSGTLNGPYAQDKH 97
A G P + H
Sbjct: 193 AVVGPSPPPPGRRLH 207
>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
sapiens]
Length = 242
Score = 35.0 bits (79), Expect = 0.024
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 23 GEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRR 82
GE ++ RGG PG G+ PLPA L R + APD G G++ R +
Sbjct: 136 GEQQQQREQRGGGARAPGPGPGSRQPLPAGL---HGRRKVGSAPDRHGLGAGSAGARGNK 192
Query: 83 APSGTLNGPYAQDKH 97
A G P + H
Sbjct: 193 AVVGPSPPPPGRRLH 207
>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
Length = 609
Score = 35.0 bits (79), Expect = 0.024
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 8 KDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPG---GGAASPLPAPLLASRPRPRGRC 64
++G + GG R EA +K+A A P PG G SP PA + P +G
Sbjct: 221 REGSFRLSGGGRPAEREAPDKKKAEAAAAPTVAPGPAQPGHVSPTPA---TTSPGEKGEA 277
Query: 65 APDGAQAGVGASRLRRRRAP 84
A AG A+ + RR AP
Sbjct: 278 GTPVA-AGTTAAAIPRRHAP 296
>gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens]
Length = 496
Score = 34.7 bits (78), Expect = 0.032
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 5 PGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRC 64
P ++GG+ GG GGG+ +R P R GGG P+ RPR
Sbjct: 20 PDREEGGS---GGG--GGGDEDGSLGSRAEPAPRAREGGGCGRSEVRPVAPRRPRD---- 70
Query: 65 APDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAG 107
G + GA R RR P ++ P A L V P G
Sbjct: 71 -AVGQRGAQGAGRRRRAGGPPRPMSEPGAGAGSSLLDVAEPGG 112
>gi|29570782 additional sex combs like 1 [Homo sapiens]
Length = 1541
Score = 34.7 bits (78), Expect = 0.032
Identities = 31/88 (35%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 2 GPSPGGKDGGAFIWGGARAG----GGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASR 57
G PGG GGA GG R GGEA RGG PG + LL
Sbjct: 644 GGGPGGGGGGATDEGGGRGSSSGDGGEACGHPEPRGGP---STPGKCTSDLQRTQLLPPY 700
Query: 58 PRPRGRCAPDGAQAGVGASRLRRRRAPS 85
P + QAG SR RR PS
Sbjct: 701 P-----LNGEHTQAGTAMSRARREDLPS 723
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 34.3 bits (77), Expect = 0.041
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 6 GGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGG 44
GG+ G +GG R+GGG R+ GG GDR GGG
Sbjct: 406 GGRGGDRGGYGGDRSGGGYG--GDRSSGGGYSGDRSGGG 442
Score = 28.1 bits (61), Expect = 3.0
Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 2 GPSPGGKDGGAFIWGGARAGG--GEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPR 59
G GG GG + GG R GG G+ RGG GDR G G
Sbjct: 457 GGGYGGDRGGGY--GGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGG 514
Query: 60 PRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHG 98
RG D ++ G G R G +G Y D+ G
Sbjct: 515 DRGGYGGDRSRGGYGGDR-GGGSGYGGDRSGGYGGDRSG 552
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 34.3 bits (77), Expect = 0.041
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 6 GGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGG 44
GG+ G +GG R+GGG R+ GG GDR GGG
Sbjct: 409 GGRGGDRGGYGGDRSGGGYG--GDRSSGGGYSGDRSGGG 445
Score = 28.1 bits (61), Expect = 3.0
Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 2 GPSPGGKDGGAFIWGGARAGG--GEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPR 59
G GG GG + GG R GG G+ RGG GDR G G
Sbjct: 460 GGGYGGDRGGGY--GGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGG 517
Query: 60 PRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHG 98
RG D ++ G G R G +G Y D+ G
Sbjct: 518 DRGGYGGDRSRGGYGGDR-GGGSGYGGDRSGGYGGDRSG 555
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 34.3 bits (77), Expect = 0.041
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 17 GARAGGGEALTRKRARGGAVPGD-RPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGA 75
G+R + R RARG + PG +P GAA P AP A P + +G+
Sbjct: 95 GSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGS 154
Query: 76 S--------RLRRRRAPSGT 87
S R+R P+GT
Sbjct: 155 SPLHPVRLGRVRAHAGPAGT 174
Score = 27.3 bits (59), Expect = 5.0
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 17 GARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGAS 76
G A G + R+R RG P P G A R R RGR AP AQ GA+
Sbjct: 79 GCGAHGPGSRGRERRRGSRDP---PAGPVA----------RARARGRSAPGSAQPASGAA 125
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 34.3 bits (77), Expect = 0.041
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 17 GARAGGGEALTRKRARGGAVPGD-RPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGA 75
G+R + R RARG + PG +P GAA P AP A P + +G+
Sbjct: 95 GSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGS 154
Query: 76 S--------RLRRRRAPSGT 87
S R+R P+GT
Sbjct: 155 SPLHPVRLGRVRAHAGPAGT 174
Score = 27.3 bits (59), Expect = 5.0
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 17 GARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGAS 76
G A G + R+R RG P P G A R R RGR AP AQ GA+
Sbjct: 79 GCGAHGPGSRGRERRRGSRDP---PAGPVA----------RARARGRSAPGSAQPASGAA 125
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 34.3 bits (77), Expect = 0.041
Identities = 34/111 (30%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 3 PSPGGKDGGAFIWG--GARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 60
P P G G A + G G R GE PG++ G P P A P
Sbjct: 321 PGPKGDRGPAGVPGLLGDRGEPGE---------DGEPGEQGPQGLGGPPGLPGSAGLPGR 371
Query: 61 RGRCAPDGAQAGVGASR----LRRRRAPSGTLNGPYAQDKHGLNQVHAPAG 107
RG P G +AG G +R + PSG P + GL H P G
Sbjct: 372 RGPPGPKG-EAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPG 421
Score = 27.7 bits (60), Expect = 3.9
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 36 VPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQD 95
+PG + G P P A P G P G G + P G P A D
Sbjct: 479 LPGLKGEPGLPGP-PGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFD 537
Query: 96 KHGLNQVHAPAGDALTEVRTAVPGQ-VKPR-TLGPKNLTGTPCLMKLRTA 143
+ G+ +H P G V AV G+ KP+ LG + TP + T+
Sbjct: 538 ETGIAGLHLPNGG----VEGAVLGKGGKPQFGLGELSAHATPAFTAVLTS 583
Score = 26.6 bits (57), Expect = 8.6
Identities = 41/142 (28%), Positives = 47/142 (33%), Gaps = 20/142 (14%)
Query: 5 PGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDR--PGG----GAASPLPAPLLASRP 58
PGG G I G G A VPG+R PG G P P RP
Sbjct: 383 PGGPPGVPGIRGDQGPSG-------LAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRP 435
Query: 59 RPRGRCAPDGAQAGVGASRLRRRRAPSGT--LNGPYAQ-DKHGLNQVHAPAG--DALTEV 113
G G + +G R PSG L GP GL + G E
Sbjct: 436 GGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEG 495
Query: 114 RTAVPGQVKPRTLGPKNLTGTP 135
R PG P GP + G+P
Sbjct: 496 RAGEPGTAGP--TGPPGVPGSP 515
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,983,262
Number of Sequences: 37866
Number of extensions: 521523
Number of successful extensions: 3664
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 464
Number of HSP's that attempted gapping in prelim test: 2835
Number of HSP's gapped (non-prelim): 1160
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.