Guide to the Human Genome
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Name: LOC728431 Sequence: fasta or formatted (284aa) NCBI GI: 169160624
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {151aa} PREDICTED: hypothetical protein
alt prot {151aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         36           3
 C cysteine            2.5          7           1
 D aspartate           2.8          8           1
 E glutamate           2.8          8           1
 F phenylalanine       0.4          1           1
 G glycine            14.4         41           3
 H histidine           1.4          4           1
 I isoleucine          0.4          1           1
 K lysine              3.5         10           1
 L leucine             7.7         22           2
 M methionine          1.1          3           1
 N asparagine          1.1          3           1
 P proline            11.6         33           2
 Q glutamine           3.9         11           1
 R arginine           12.0         34           4
 S serine              8.1         23           2
 T threonine           4.6         13           1
 V valine              4.2         12           1
 W tryptophan          2.1          6           1
 X unknown             2.5          7           7
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728431             0.524   PREDICTED: hypothetical protein 
LOC728431             0.524   PREDICTED: hypothetical protein 
LOC339192             0.047   PREDICTED: hypothetical protein 
LOC339192             0.045   PREDICTED: hypothetical protein 
LOC339192             0.045   PREDICTED: hypothetical protein 
PRB2                  0.042   proline-rich protein BstNI subfamily 2 
C17orf82              0.036   hypothetical protein LOC388407 
FLJ37078              0.033   hypothetical protein LOC222183 
LOC100131354          0.031   PREDICTED: hypothetical protein 
LOC729506             0.031   PREDICTED: hypothetical protein 
LOC729506             0.031   PREDICTED: hypothetical protein 
LOC100289763          0.031   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.031   PREDICTED: hypothetical protein XP_002343623 
DMRTA2                0.031   DMRT-like family A2 
LOC100292172          0.029   PREDICTED: hypothetical protein 
KIF26A                0.029   kinesin family member 26A 
PRB1                  0.029   proline-rich protein BstNI subfamily 1 isoform 1 pre...
COL11A1               0.027   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.027   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.027   alpha 1 type XI collagen isoform A preproprotein [Ho...
LOC729506             0.027   PREDICTED: hypothetical protein 
LOC100291533          0.027   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.027   PREDICTED: hypothetical protein XP_002342946 
PRB1                  0.027   proline-rich protein BstNI subfamily 1 isoform 2 pre...
ARID1B                0.027   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.027   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.027   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
COL1A2                0.027   alpha 2 type I collagen 
LOC100292541          0.027   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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