Guide to the Human Genome
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Name: ABCB10 Sequence: fasta or formatted (738aa) NCBI GI: 171184400
Description:

ATP-binding cassette, sub-family B, member 10

Referenced in:

ATP-binding Cassette Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         84           4
 C cysteine            0.9          7           1
 D aspartate           2.8         21           2
 E glutamate           4.9         36           2
 F phenylalanine       4.2         31           2
 G glycine            10.3         76           3
 H histidine           0.8          6           1
 I isoleucine          4.9         36           2
 K lysine              3.7         27           1
 L leucine            12.3         91           3
 M methionine          2.0         15           2
 N asparagine          3.1         23           1
 P proline             6.0         44           2
 Q glutamine           2.6         19           1
 R arginine            7.6         56           3
 S serine              8.1         60           2
 T threonine           3.9         29           1
 V valine              6.8         50           2
 W tryptophan          1.5         11           1
 Y tyrosine            2.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family B, member 10 [Homo... 
ABCB8                 0.278   ATP-binding cassette, sub-family B, member 8 
ABCB9                 0.265   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.265   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB9                 0.236   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB1                 0.228   ATP-binding cassette, subfamily B, member 1 
ABCB4                 0.228   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB4                 0.228   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.228   ATP-binding cassette, subfamily B, member 4 isoform A...
TAP1                  0.220   transporter 1, ATP-binding cassette, sub-family B [Ho...
ABCB11                0.217   ATP-binding cassette, sub-family B (MDR/TAP), member...
TAP2                  0.209   transporter 2, ATP-binding cassette, sub-family B is...
ABCB5                 0.200   ATP-binding cassette, sub-family B, member 5 
TAP2                  0.188   transporter 2, ATP-binding cassette, sub-family B is...
ABCB6                 0.150   ATP-binding cassette, sub-family B, member 6 
ABCB7                 0.140   ATP-binding cassette, sub-family B, member 7 
ABCC2                 0.110   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCC1                 0.107   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.107   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.107   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.107   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC10                0.103   ATP-binding cassette, sub-family C, member 10 
ABCC8                 0.100   ATP-binding cassette, sub-family C, member 8 
ABCC12                0.100   ATP-binding cassette protein C12 
ABCC3                 0.100   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC9                 0.099   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC6                 0.098   ATP-binding cassette, sub-family C, member 6 isofor...
LOC100292715          0.097   PREDICTED: hypothetical protein 
ABCC9                 0.094   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.094   ATP-binding cassette, sub-family C, member 9 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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