Guide to the Human Genome
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Name: LOC100131354 Sequence: fasta or formatted (382aa) NCBI GI: 169162742
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {392aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         44           5
 C cysteine            2.1          8           1
 D aspartate           2.9         11           1
 E glutamate           3.4         13           2
 F phenylalanine       0.8          3           1
 G glycine            12.6         48           4
 H histidine           1.0          4           1
 I isoleucine          0.8          3           1
 K lysine              2.6         10           2
 L leucine            10.5         40           3
 M methionine          0.8          3           1
 N asparagine          0.8          3           1
 P proline            14.1         54           3
 Q glutamine           3.7         14           2
 R arginine           10.7         41           2
 S serine              8.9         34           2
 T threonine           5.5         21           2
 V valine              4.5         17           2
 W tryptophan          1.8          7           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131354          0.854   PREDICTED: hypothetical protein 
FLJ37078              0.035   hypothetical protein LOC222183 
FLJ22184              0.033   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
LOC645722             0.027   PREDICTED: similar to hCG2037003 
LOC100293055          0.027   PREDICTED: similar to COL22A1 protein 
LOC338758             0.026   PREDICTED: hypothetical protein 
LOC338758             0.026   PREDICTED: hypothetical protein 
LOC338758             0.026   PREDICTED: hypothetical protein 
C10orf47              0.026   hypothetical protein LOC254427 
AGAP2                 0.025   centaurin, gamma 1 isoform PIKE-L 
C6orf132              0.025   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.025   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.025   PREDICTED: hypothetical protein LOC647024 
SAMD1                 0.024   sterile alpha motif domain containing 1 
LOC100130128          0.022   PREDICTED: hypothetical protein 
LOC728431             0.022   PREDICTED: hypothetical protein 
TTMA                  0.022   hypothetical protein LOC645369 
FLJ31945              0.022   PREDICTED: hypothetical protein 
LOC100130128          0.022   PREDICTED: hypothetical protein 
FLJ31945              0.022   PREDICTED: hypothetical protein 
LOC100130128          0.022   PREDICTED: hypothetical protein 
LMTK3                 0.022   lemur tyrosine kinase 3 
COL22A1               0.022   collagen, type XXII, alpha 1 
DACT3                 0.022   thymus expressed gene 3-like 
SRRM2                 0.022   splicing coactivator subunit SRm300 
LOC100129571          0.021   PREDICTED: similar to hCG1646049 
LOC100129571          0.021   PREDICTED: similar to hCG1646049 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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