Guide to the Human Genome
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Name: LOC728431 Sequence: fasta or formatted (151aa) NCBI GI: 113412136
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {151aa} PREDICTED: hypothetical protein
alt prot {284aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.6         22           2
 C cysteine            2.0          3           1
 D aspartate           3.3          5           1
 E glutamate           2.0          3           1
 F phenylalanine       0.7          1           1
 G glycine            18.5         28           3
 H histidine           1.3          2           1
 I isoleucine          0.7          1           1
 K lysine              4.0          6           1
 L leucine             7.9         12           2
 M methionine          1.3          2           1
 N asparagine          2.0          3           1
 P proline            11.3         17           1
 Q glutamine           2.6          4           1
 R arginine           11.9         18           4
 S serine              5.3          8           2
 T threonine           5.3          8           1
 V valine              4.0          6           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728431             1.000   PREDICTED: hypothetical protein 
LOC728431             1.000   PREDICTED: hypothetical protein 
LOC339192             0.069   PREDICTED: hypothetical protein 
LOC339192             0.069   PREDICTED: hypothetical protein 
LOC339192             0.069   PREDICTED: hypothetical protein 
LOC100291176          0.049   PREDICTED: hypothetical protein XP_002346954 
LOC100131354          0.049   PREDICTED: hypothetical protein 
FLJ37078              0.049   hypothetical protein LOC222183 
ABCB10                0.045   ATP-binding cassette, sub-family B, member 10 [Homo...
PRB2                  0.045   proline-rich protein BstNI subfamily 2 
LOC100291533          0.042   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.042   PREDICTED: hypothetical protein XP_002342946 
COL2A1                0.038   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.038   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL10A1               0.038   type X collagen alpha 1 precursor 
LOC100133142          0.038   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.038   PREDICTED: similar to zinc finger protein 208 [Homo...
LRCH2                 0.038   leucine-rich repeats and calponin homology (CH) dom...
DMRTA2                0.038   DMRT-like family A2 
LOC100287290          0.035   PREDICTED: hypothetical protein 
LOC100287290          0.035   PREDICTED: hypothetical protein XP_002342446 
NUMBL                 0.035   numb homolog (Drosophila)-like 
SMAD6                 0.035   SMAD family member 6 isoform 1 
ASXL1                 0.035   additional sex combs like 1 
TAF15                 0.031   TBP-associated factor 15 isoform 2 
TAF15                 0.031   TBP-associated factor 15 isoform 1 
LOC100289763          0.031   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.031   PREDICTED: hypothetical protein XP_002343623 
COL8A2                0.031   collagen, type VIII, alpha 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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