Guide to the Human Genome
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Name: LOC100291176 Sequence: fasta or formatted (262aa) NCBI GI: 239749209
Description:

PREDICTED: hypothetical protein XP_002346954

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         30           3
 C cysteine            1.5          4           1
 D aspartate           1.9          5           1
 E glutamate           4.2         11           2
 F phenylalanine       0.8          2           1
 G glycine            11.5         30           3
 H histidine           1.9          5           1
 I isoleucine          0.4          1           1
 K lysine              1.9          5           2
 L leucine             7.3         19           2
 M methionine          1.9          5           1
 N asparagine          1.1          3           1
 P proline            13.4         35           3
 Q glutamine           3.1          8           1
 R arginine           16.0         42           5
 S serine             10.3         27           3
 T threonine           4.2         11           1
 V valine              5.3         14           1
 W tryptophan          1.5          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346954 
LOC100287322          0.365   PREDICTED: hypothetical protein XP_002342818 
LOC731282             0.043   PREDICTED: hypothetical protein 
SRRM2                 0.043   splicing coactivator subunit SRm300 
LOC731282             0.039   PREDICTED: hypothetical protein 
SYN1                  0.037   synapsin I isoform Ia 
SYN1                  0.037   synapsin I isoform Ib 
FLJ37078              0.033   hypothetical protein LOC222183 
SRRM1                 0.033   serine/arginine repetitive matrix 1 
LOC100130882          0.031   PREDICTED: hypothetical protein 
LOC100130882          0.031   PREDICTED: hypothetical protein 
LOC100130882          0.031   PREDICTED: hypothetical protein 
PLEKHA4               0.029   pleckstrin homology domain containing family A memb...
COL1A1                0.029   alpha 1 type I collagen preproprotein 
LOC100127891          0.029   PREDICTED: similar to hCG2042508 
LOC100127891          0.029   PREDICTED: similar to hCG2042508 
LOC100288606          0.029   PREDICTED: hypothetical protein XP_002342652 
LOC100127891          0.029   PREDICTED: similar to hCG2042508 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
LOC100290372          0.029   PREDICTED: hypothetical protein XP_002346788 
NACA                  0.029   nascent polypeptide-associated complex alpha subuni...
LOC728431             0.027   PREDICTED: hypothetical protein 
LOC728431             0.027   PREDICTED: hypothetical protein 
LOC728431             0.027   PREDICTED: hypothetical protein 
ABL1                  0.027   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.027   c-abl oncogene 1, receptor tyrosine kinase isoform b...
ZNF716                0.027   PREDICTED: zinc finger protein 716 
FLJ22184              0.027   PREDICTED: hypothetical protein LOC80164 
LOC100289408          0.027   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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