Guide to the Human Genome
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Name: ALS2CR4 Sequence: fasta or formatted (408aa) NCBI GI: 113205075
Description:

amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {400aa} amyotrophic lateral sclerosis 2 (juvenile) chromosome region, can...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         32           2
 C cysteine            0.2          1           1
 D aspartate           4.4         18           2
 E glutamate           8.1         33           2
 F phenylalanine       3.4         14           1
 G glycine             4.2         17           1
 H histidine           1.2          5           1
 I isoleucine          5.1         21           2
 K lysine              5.9         24           4
 L leucine            11.8         48           3
 M methionine          1.5          6           1
 N asparagine          2.9         12           1
 P proline             6.4         26           2
 Q glutamine           5.1         21           2
 R arginine            5.9         24           2
 S serine             10.0         41           5
 T threonine           6.4         26           2
 V valine              6.1         25           2
 W tryptophan          1.2          5           1
 Y tyrosine            2.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amyotrophic lateral sclerosis 2 (juvenile) chromoso... 
ALS2CR4               0.965   amyotrophic lateral sclerosis 2 (juvenile) chromoso...
NOLC1                 0.022   nucleolar and coiled-body phosphoprotein 1 
TTN                   0.021   titin isoform N2-A 
FAM186A               0.019   family with sequence similarity 186, member A [Homo...
PRG4                  0.019   proteoglycan 4 isoform B 
PRG4                  0.019   proteoglycan 4 isoform A 
PHF23                 0.018   PHD finger protein 23 
BSN                   0.018   bassoon protein 
C14orf174             0.017   hypothetical protein LOC161394 
USP36                 0.017   ubiquitin specific peptidase 36 
MYST3                 0.016   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.016   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.016   MYST histone acetyltransferase (monocytic leukemia)...
NOM1                  0.016   nucleolar protein with MIF4G domain 1 
CCNI2                 0.016   cyclin I family, member 2 
HOXA3                 0.016   homeobox A3 isoform a 
HOXA3                 0.016   homeobox A3 isoform a 
DACT1                 0.016   dapper 1 isoform 2 
DACT1                 0.016   dapper 1 isoform 1 
ZC3H11A               0.016   zinc finger CCCH-type containing 11A 
LOC338756             0.014   PREDICTED: similar to Nucleolar protein 5A 
LOC338756             0.014   PREDICTED: similar to Nucleolar protein 5A 
LOC338756             0.014   PREDICTED: hypothetical protein 
MSN                   0.014   moesin 
TXNDC2                0.014   thioredoxin domain-containing 2 isoform 1 
TXNDC2                0.014   thioredoxin domain-containing 2 isoform 2 
TXNDC2                0.014   thioredoxin domain-containing 2 isoform 1 
TOP2A                 0.014   DNA topoisomerase II, alpha isozyme 
RNF169                0.014   ring finger protein 169 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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