Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TXNDC2 Sequence: fasta or formatted (486aa) NCBI GI: 42516570
Description:

thioredoxin domain-containing 2 isoform 1

Referenced in:

Glutathione Pathways

Other entries for this name:
alt mRNA [486aa] thioredoxin domain-containing 2 isoform 1
alt prot [553aa] thioredoxin domain-containing 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         30           1
 C cysteine            1.2          6           1
 D aspartate           6.4         31           2
 E glutamate          14.4         70           3
 F phenylalanine       1.9          9           2
 G glycine             4.3         21           1
 H histidine           1.0          5           1
 I isoleucine          8.4         41           1
 K lysine             14.2         69           2
 L leucine             4.3         21           1
 M methionine          0.8          4           1
 N asparagine          1.2          6           1
 P proline            13.0         63           2
 Q glutamine           4.9         24           1
 R arginine            1.0          5           1
 S serine              9.7         47           2
 T threonine           3.1         15           1
 V valine              3.5         17           2
 W tryptophan          0.2          1           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thioredoxin domain-containing 2 isoform 1 
TXNDC2                1.000   thioredoxin domain-containing 2 isoform 1 
TXNDC2                1.000   thioredoxin domain-containing 2 isoform 2 
TXN                   0.118   thioredoxin 
PRAM1                 0.084   PML-RARA regulated adaptor molecule 1 
TTN                   0.083   titin isoform N2-A 
NEFH                  0.079   neurofilament, heavy polypeptide 200kDa 
TXNDC8                0.062   thioredoxin domain containing 8 
C6orf10               0.059   chromosome 6 open reading frame 10 
RP1L1                 0.054   retinitis pigmentosa 1-like 1 
NACA                  0.053   nascent polypeptide-associated complex alpha subuni...
TXNL1                 0.052   thioredoxin-like 1 
MAP1B                 0.052   microtubule-associated protein 1B 
SPEN                  0.049   spen homolog, transcriptional regulator 
TGOLN2                0.048   trans-golgi network protein 2 
MLL2                  0.046   myeloid/lymphoid or mixed-lineage leukemia 2 
TRDN                  0.046   triadin 
PRG4                  0.042   proteoglycan 4 isoform D 
PRG4                  0.042   proteoglycan 4 isoform C 
PRG4                  0.042   proteoglycan 4 isoform B 
PRG4                  0.042   proteoglycan 4 isoform A 
C14orf174             0.041   hypothetical protein LOC161394 
RBBP6                 0.040   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.040   retinoblastoma-binding protein 6 isoform 1 
C1orf113              0.039   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.039   SH3 domain-containing protein C1orf113 isoform 2 [H...
NEFM                  0.039   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.039   neurofilament, medium polypeptide 150kDa isoform 2 ...
ZAN                   0.039   zonadhesin isoform 3 
ZAN                   0.039   zonadhesin isoform 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press