Guide to the Human Genome
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Name: RNF169 Sequence: fasta or formatted (708aa) NCBI GI: 148839382
Description:

ring finger protein 169

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         60           6
 C cysteine            2.7         19           2
 D aspartate           3.8         27           2
 E glutamate           8.8         62           3
 F phenylalanine       1.6         11           1
 G glycine             6.8         48           3
 H histidine           1.4         10           1
 I isoleucine          2.4         17           2
 K lysine              6.8         48           2
 L leucine            10.5         74           2
 M methionine          1.3          9           1
 N asparagine          3.1         22           2
 P proline             8.1         57           2
 Q glutamine           4.8         34           2
 R arginine            8.9         63           3
 S serine             10.6         75           2
 T threonine           5.4         38           2
 V valine              3.8         27           1
 W tryptophan          0.3          2           1
 Y tyrosine            0.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 169 
RNF168                0.054   ring finger protein 168 
TRIM7                 0.020   tripartite motif-containing 7 isoform 1 
TRIM7                 0.018   tripartite motif-containing 7 isoform 4 
TRIM21                0.018   tripartite motif protein 21 
TRIM35                0.017   tripartite motif-containing 35 isoform 2 
LOC645321             0.017   PREDICTED: hypothetical protein 
LOC645321             0.017   PREDICTED: hypothetical protein 
SAMD1                 0.016   sterile alpha motif domain containing 1 
TRIM65                0.015   tripartite motif-containing 65 
MAP7D1                0.015   MAP7 domain containing 1 
TRIM25                0.014   tripartite motif-containing 25 
TRIM4                 0.014   tripartite motif protein TRIM4 isoform beta 
TRIM4                 0.014   tripartite motif protein TRIM4 isoform alpha 
TRIM33                0.014   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.014   tripartite motif-containing 33 protein isoform alpha...
DTX3                  0.014   deltex homolog 3 
MARK2                 0.014   MAP/microtubule affinity-regulating kinase 2 isofor...
TRIM47                0.014   tripartite motif-containing 47 
RNF135                0.014   ring finger protein 135 isoform 2 
RNF135                0.014   ring finger protein 135 isoform 1 
CXorf67               0.013   hypothetical protein LOC340602 
MEX3A                 0.012   MEX3A protein 
LOC643355             0.012   PREDICTED: hypothetical protein 
LOC643355             0.012   PREDICTED: hypothetical protein 
MEX3D                 0.012   ring finger and KH domain containing 1 
CLIC6                 0.012   chloride intracellular channel 6 
MARK2                 0.012   MAP/microtubule affinity-regulating kinase 2 isofor...
LONRF3                0.012   LON peptidase N-terminal domain and ring finger 3 is...
LONRF3                0.012   LON peptidase N-terminal domain and ring finger 3 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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