Guide to the Human Genome
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Name: ALS2CR4 Sequence: fasta or formatted (400aa) NCBI GI: 113205077
Description:

amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {408aa} amyotrophic lateral sclerosis 2 (juvenile) chromosome region, can...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         31           2
 C cysteine            0.2          1           1
 D aspartate           4.2         17           2
 E glutamate           7.8         31           2
 F phenylalanine       3.5         14           1
 G glycine             4.0         16           1
 H histidine           1.0          4           1
 I isoleucine          5.2         21           2
 K lysine              6.2         25           4
 L leucine            11.5         46           3
 M methionine          1.5          6           1
 N asparagine          3.2         13           1
 P proline             6.8         27           2
 Q glutamine           5.2         21           2
 R arginine            5.5         22           2
 S serine             10.0         40           5
 T threonine           6.2         25           2
 V valine              6.5         26           2
 W tryptophan          1.2          5           1
 Y tyrosine            2.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amyotrophic lateral sclerosis 2 (juvenile) chromoso... 
ALS2CR4               0.984   amyotrophic lateral sclerosis 2 (juvenile) chromoso...
TTN                   0.021   titin isoform N2-A 
FAM186A               0.020   family with sequence similarity 186, member A [Homo...
PRG4                  0.020   proteoglycan 4 isoform B 
PRG4                  0.020   proteoglycan 4 isoform A 
PHF23                 0.019   PHD finger protein 23 
NOLC1                 0.019   nucleolar and coiled-body phosphoprotein 1 
USP36                 0.016   ubiquitin specific peptidase 36 
LOC338756             0.016   PREDICTED: similar to Nucleolar protein 5A 
LOC338756             0.016   PREDICTED: similar to Nucleolar protein 5A 
LOC338756             0.016   PREDICTED: hypothetical protein 
MYST3                 0.016   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.016   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.016   MYST histone acetyltransferase (monocytic leukemia)...
ZC3H11A               0.016   zinc finger CCCH-type containing 11A 
HOXA3                 0.015   homeobox A3 isoform a 
HOXA3                 0.015   homeobox A3 isoform a 
MSN                   0.015   moesin 
TOP2A                 0.015   DNA topoisomerase II, alpha isozyme 
BRD4                  0.015   bromodomain-containing protein 4 isoform long 
CHD3                  0.015   chromodomain helicase DNA binding protein 3 isoform...
RNF169                0.015   ring finger protein 169 
ZFAND5                0.015   zinc finger, AN1-type domain 5 
ZFAND5                0.015   zinc finger, AN1-type domain 5 
ZFAND5                0.015   zinc finger, AN1-type domain 5 
DNAH3                 0.015   dynein, axonemal, heavy chain 3 
AFF4                  0.015   ALL1 fused gene from 5q31 
POP1                  0.013   processing of precursor 1 
POP1                  0.013   processing of precursor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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