Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PHF23 Sequence: fasta or formatted (403aa) NCBI GI: 116268091
Description:

PHD finger protein 23

Referenced in:

PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         30           2
 C cysteine            2.0          8           1
 D aspartate           6.5         26           2
 E glutamate           9.9         40          14
 F phenylalanine       2.5         10           2
 G glycine             7.2         29           2
 H histidine           1.0          4           1
 I isoleucine          2.2          9           1
 K lysine              7.9         32           2
 L leucine             6.5         26           2
 M methionine          2.0          8           1
 N asparagine          0.7          3           1
 P proline            13.9         56           3
 Q glutamine           2.2          9           1
 R arginine            6.9         28           3
 S serine              9.9         40           3
 T threonine           5.5         22           1
 V valine              3.7         15           2
 W tryptophan          1.0          4           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PHD finger protein 23 
PHF13                 0.129   PHD finger protein 13 
PHF20                 0.038   PHD finger protein 20 
TAF3                  0.037   RNA polymerase II transcription factor TAFII140 [Ho...
TTBK1                 0.036   tau tubulin kinase 1 
PRKCSH                0.035   protein kinase C substrate 80K-H isoform 1 
BAT2D1                0.033   HBxAg transactivated protein 2 
BAT2                  0.032   HLA-B associated transcript-2 
LRRC68                0.031   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.031   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.031   PREDICTED: leucine rich repeat containing 68 
KDM6B                 0.031   lysine (K)-specific demethylase 6B 
MLL5                  0.031   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.031   myeloid/lymphoid or mixed-lineage leukemia 5 
SAPS1                 0.031   SAPS domain family, member 1 
NOLC1                 0.028   nucleolar and coiled-body phosphoprotein 1 
PRKCSH                0.028   protein kinase C substrate 80K-H isoform 2 
AEBP2                 0.028   AE binding protein 2 isoform b 
AEBP2                 0.028   AE binding protein 2 isoform a 
C19orf61              0.027   hypothetical protein LOC56006 
RP1L1                 0.027   retinitis pigmentosa 1-like 1 
REXO1                 0.027   transcription elongation factor B polypeptide 3 bin...
PRG2                  0.027   plasticity-related protein 2 
NACA                  0.027   nascent polypeptide-associated complex alpha subuni...
BPTF                  0.026   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.026   bromodomain PHD finger transcription factor isoform ...
ZBTB4                 0.026   zinc finger and BTB domain containing 4 
ZBTB4                 0.026   zinc finger and BTB domain containing 4 
COBL                  0.026   cordon-bleu homolog 
INTS12                0.025   integrator complex subunit 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press