Guide to the Human Genome
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Name: LOC338756 Sequence: fasta or formatted (166aa) NCBI GI: 169203848
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {166aa} PREDICTED: similar to Nucleolar protein 5A
alt mRNA {166aa} PREDICTED: similar to Nucleolar protein 5A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          6           2
 C cysteine            0.6          1           1
 D aspartate           3.6          6           1
 E glutamate          14.5         24           2
 F phenylalanine       3.0          5           1
 G glycine             5.4          9           2
 H histidine           1.8          3           1
 I isoleucine          0.6          1           1
 K lysine             17.5         29           5
 L leucine             2.4          4           2
 M methionine          1.8          3           1
 N asparagine          3.6          6           1
 P proline             7.2         12           1
 Q glutamine           3.6          6           1
 R arginine            2.4          4           1
 S serine             15.1         25           3
 T threonine           7.2         12           1
 V valine              5.4          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC338756             1.000   PREDICTED: similar to Nucleolar protein 5A 
LOC338756             1.000   PREDICTED: similar to Nucleolar protein 5A 
NOP56                 0.619   nucleolar protein 5A 
LOC402360             0.463   PREDICTED: similar to hCG1742476 
LOC402360             0.463   PREDICTED: similar to hCG1742476 
LOC402360             0.463   PREDICTED: hypothetical protein LOC402360 
GTF2F1                0.091   general transcription factor IIF, polypeptide 1, 74...
CHD4                  0.072   chromodomain helicase DNA binding protein 4 
TXNDC2                0.068   thioredoxin domain-containing 2 isoform 1 
TXNDC2                0.068   thioredoxin domain-containing 2 isoform 2 
TXNDC2                0.068   thioredoxin domain-containing 2 isoform 1 
MAP1B                 0.065   microtubule-associated protein 1B 
DDX21                 0.062   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
LOC100294088          0.059   PREDICTED: hypothetical protein, partial 
TCHHL1                0.059   trichohyalin-like 1 
NEFH                  0.059   neurofilament, heavy polypeptide 200kDa 
LIG1                  0.055   DNA ligase I 
FAM133A               0.055   hypothetical protein LOC286499 
RBMX2                 0.055   RNA binding motif protein, X-linked 2 
SFRS4                 0.052   splicing factor, arginine/serine-rich 4 
NEFM                  0.052   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.052   neurofilament, medium polypeptide 150kDa isoform 2 ...
FAM133B               0.052   hypothetical protein LOC257415 isoform 2 
FAM133B               0.052   hypothetical protein LOC257415 isoform 1 
MYST3                 0.052   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.052   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.052   MYST histone acetyltransferase (monocytic leukemia)...
CHD2                  0.052   chromodomain helicase DNA binding protein 2 isoform...
AP3D1                 0.049   adaptor-related protein complex 3, delta 1 subunit ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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