Guide to the Human Genome
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Name: NOM1 Sequence: fasta or formatted (860aa) NCBI GI: 61097912
Description:

nucleolar protein with MIF4G domain 1

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         72           3
 C cysteine            1.2         10           2
 D aspartate           5.3         46           3
 E glutamate          10.6         91           5
 F phenylalanine       3.5         30           1
 G glycine             7.3         63           3
 H histidine           2.3         20           2
 I isoleucine          3.5         30           2
 K lysine              8.3         71           3
 L leucine            10.9         94           2
 M methionine          2.3         20           2
 N asparagine          2.7         23           2
 P proline             3.5         30           2
 Q glutamine           3.4         29           2
 R arginine            8.1         70           2
 S serine              7.9         68           3
 T threonine           4.2         36           1
 V valine              4.8         41           2
 W tryptophan          0.6          5           2
 Y tyrosine            1.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleolar protein with MIF4G domain 1 
CWC22                 0.063   CWC22 spliceosome-associated protein homolog 
MYT1L                 0.023   myelin transcription factor 1-like 
RPGR                  0.022   retinitis pigmentosa GTPase regulator isoform C [Hom...
LOC100294088          0.021   PREDICTED: hypothetical protein, partial 
YTHDC1                0.020   splicing factor YT521-B isoform 2 
YTHDC1                0.020   splicing factor YT521-B isoform 1 
CDC2L2                0.020   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.020   cell division cycle 2-like 2 isoform 1 
MAP7                  0.020   microtubule-associated protein 7 
CDC2L1                0.020   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.020   cell division cycle 2-like 1 (PITSLRE proteins) isof...
ANP32B                0.020   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
CDC2L1                0.020   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.020   cell division cycle 2-like 1 (PITSLRE proteins) isof...
RP1L1                 0.019   retinitis pigmentosa 1-like 1 
SFRS12                0.019   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.019   splicing factor, arginine/serine-rich 12 isoform b [...
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
EIF5B                 0.019   eukaryotic translation initiation factor 5B 
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
MAP7D1                0.019   MAP7 domain containing 1 
NCL                   0.019   nucleolin 
LOC283685             0.019   PREDICTED: golgi autoantigen, golgin subfamily a-li...
PELP1                 0.019   proline, glutamic acid and leucine rich protein 1 [...
PRPF38B               0.019   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
SETD1B                0.018   SET domain containing 1B 
MYT1                  0.018   myelin transcription factor 1 
ANP32E                0.018   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
LOC647020             0.017   PREDICTED: similar to acidic (leucine-rich) nuclear...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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