Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: USP36 Sequence: fasta or formatted (1123aa) NCBI GI: 122114651
Description:

ubiquitin specific peptidase 36

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         84           2
 C cysteine            2.0         23           1
 D aspartate           4.5         50           2
 E glutamate           4.9         55           2
 F phenylalanine       2.3         26           1
 G glycine             7.0         79           2
 H histidine           3.1         35           2
 I isoleucine          2.5         28           2
 K lysine              8.3         93           6
 L leucine             7.7         86           2
 M methionine          1.5         17           1
 N asparagine          3.5         39           2
 P proline             8.3         93           4
 Q glutamine           5.0         56           2
 R arginine            6.6         74           3
 S serine             11.5        129           5
 T threonine           5.5         62           3
 V valine              5.3         59           2
 W tryptophan          0.9         10           1
 Y tyrosine            2.2         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific peptidase 36 
USP42                 0.228   ubiquitin specific peptidase 42 
LOC728373             0.156   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC100287513          0.156   PREDICTED: hypothetical protein XP_002342480 
LOC100287404          0.156   PREDICTED: hypothetical protein XP_002342477 
LOC100287364          0.156   PREDICTED: hypothetical protein XP_002342476 
LOC100287178          0.156   PREDICTED: hypothetical protein XP_002342472 
LOC100287238          0.156   PREDICTED: hypothetical protein XP_002342474 
LOC728379             0.156   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC728419             0.156   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728405             0.156   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728400             0.156   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728393             0.156   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728379             0.156   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728373             0.156   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728369             0.156   PREDICTED: similar to deubiquitinating enzyme 3 [Ho...
LOC100287441          0.156   PREDICTED: hypothetical protein XP_002342478 
LOC100287327          0.156   PREDICTED: hypothetical protein XP_002342475 
USP17L5               0.155   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
LOC100288520          0.155   PREDICTED: hypothetical protein XP_002342486 
LOC100287478          0.154   PREDICTED: hypothetical protein XP_002342479 
LOC100287205          0.154   PREDICTED: hypothetical protein XP_002342473 
USP17                 0.154   ubiquitin specific peptidase 17 
LOC100287144          0.151   PREDICTED: hypothetical protein XP_002342471 
DUB3                  0.151   deubiquitinating enzyme 3 
USP17L8               0.150   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L3               0.147   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
USP17L4               0.146   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L7               0.142   PREDICTED: Inactive ubiquitin carboxyl-terminal hydr...
USP17L7               0.141   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press