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Search of human proteins with 104485446
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|104485446 TBP-associated factor 8 [Homo sapiens]
(310 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|104485446 TBP-associated factor 8 [Homo sapiens] 612 e-175
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 47 2e-05
gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 36 0.050
gi|25952087 potassium voltage-gated channel, shaker-related subf... 35 0.065
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 34 0.14
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 34 0.14
gi|89353295 core-binding factor, runt domain, alpha subunit 2; t... 34 0.19
gi|74229008 core-binding factor, runt domain, alpha subunit 2; t... 34 0.19
gi|4826663 core-binding factor, runt domain, alpha subunit 2; tr... 34 0.19
gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1... 33 0.32
gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens] 33 0.42
gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens] 33 0.42
gi|4504817 potassium voltage-gated channel, shaker-related subfa... 33 0.42
gi|7662292 SPTF-associated factor 65 gamma [Homo sapiens] 32 0.72
gi|122937341 hypothetical protein LOC388960 [Homo sapiens] 32 0.94
gi|5454106 TBP-related factor 10 [Homo sapiens] 31 1.6
gi|54607116 leiomodin 3 (fetal) [Homo sapiens] 31 1.6
gi|188536047 SWI/SNF-related matrix-associated actin-dependent r... 30 2.1
gi|115529449 upstream binding transcription factor, RNA polymera... 30 2.1
gi|115529451 upstream binding transcription factor, RNA polymera... 30 2.1
gi|7657671 upstream binding transcription factor, RNA polymerase... 30 2.1
gi|87299628 biorientation of chromosomes in cell division 1-like... 30 2.1
gi|28872803 myeloid translocation gene on chromosome 16 isoform ... 30 2.1
gi|28872805 myeloid translocation gene on chromosome 16 isoform ... 30 2.1
gi|55956904 mitogen-activated protein kinase kinase kinase 4 iso... 30 2.1
gi|55956902 mitogen-activated protein kinase kinase kinase 4 iso... 30 2.1
gi|11386193 zinc finger protein 197 isoform 1 [Homo sapiens] 30 2.1
gi|68800230 zinc finger protein 197 isoform 2 [Homo sapiens] 30 2.1
gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens] 30 2.7
gi|13786123 HMG-box transcription factor TCF-3 [Homo sapiens] 30 2.7
>gi|104485446 TBP-associated factor 8 [Homo sapiens]
Length = 310
Score = 612 bits (1577), Expect = e-175
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET 60
MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
Sbjct: 1 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET 60
Query: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 121 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA 180
APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
Sbjct: 121 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA 180
Query: 181 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET 240
SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
Sbjct: 181 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET 240
Query: 241 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK 300
DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
Sbjct: 241 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK 300
Query: 301 PKIRRKKSLS 310
PKIRRKKSLS
Sbjct: 301 PKIRRKKSLS 310
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 47.4 bits (111), Expect = 2e-05
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 34 RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI 93
R L+V V+ + G++S + ++ LT++LQ Y+ ++GR Y E RT P L D+
Sbjct: 7 RSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILDDV 66
Query: 94 VVTLVEMGFNVDTLPAY 110
MG ++ L Y
Sbjct: 67 GEAFQLMGVSLHELEDY 83
>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
Length = 1288
Score = 35.8 bits (81), Expect = 0.050
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 14/131 (10%)
Query: 108 PAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPE-------FPDPHTY- 159
PA S +PPV+ + ++P + PH P +P+ PE P P T
Sbjct: 1018 PAQPSPSAVQTPPSPPVSPRVLSPPTTKRRTSPPHQPKLPNPPPESAPAQCKVPSPPTQH 1077
Query: 160 -IKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTF-----PL 213
+P + P + + + RD E + +G T S+F S+ PL
Sbjct: 1078 PEASPPFSIPSPSPPMSPSQEHKETRDSEDSQAVIAKVSGNTHSIFCPATSSLFEAKPPL 1137
Query: 214 IAARPFTIPYL 224
A P T P L
Sbjct: 1138 STAHPLTPPSL 1148
>gi|25952087 potassium voltage-gated channel, shaker-related
subfamily, member 5 [Homo sapiens]
Length = 613
Score = 35.4 bits (80), Expect = 0.065
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 83 TARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPH 142
+AR +S +V+ + + F ++TLP + R +R ++ PP +QP P G
Sbjct: 248 SARAIAIVSVLVILISIITFCLETLPEF--RDERELLRHPPAPHQPPAPAPGANGSGVMA 305
Query: 143 PPHIPSHFPEFP----DPHTYIKT 162
PP P+ P P DP ++T
Sbjct: 306 PPSGPTVAPLLPRTLADPFFIVET 329
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 34.3 bits (77), Expect = 0.14
Identities = 49/202 (24%), Positives = 71/202 (35%), Gaps = 26/202 (12%)
Query: 123 PVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQ 182
P ++P+ LT +P IP+ P P I T P + + EK +
Sbjct: 762 PTEKPTISPEKLTIPTEKPT---IPTEKPTIPTEKPTISTEEPTTPTEETTISTEKPSIP 818
Query: 183 RRD----VERALTRFMAKTGETQSLF----KDDVSTF--------PLIAARPFTIPYLTA 226
E T T T+ L K +ST P I+ TIP
Sbjct: 819 MEKPTLPTEETTTSVEETTISTEKLTIPMEKPTISTEKPTIPTEKPTISPEKLTIPTEKL 878
Query: 227 LLPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGE 286
+P+E +EET S + TE IS E E ++ + P++ E
Sbjct: 879 TIPTEKPTIPIEETTISTEKLTIPTEKPT--ISPEKPTISTEKPTIPTEKPTIP----TE 932
Query: 287 ENIIDNPYLR-PVKKPKIRRKK 307
E I L P +KP I +K
Sbjct: 933 ETTISTEKLTIPTEKPTISPEK 954
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 34.3 bits (77), Expect = 0.14
Identities = 49/202 (24%), Positives = 71/202 (35%), Gaps = 26/202 (12%)
Query: 123 PVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQ 182
P ++P+ LT +P IP+ P P I T P + + EK +
Sbjct: 762 PTEKPTISPEKLTIPTEKPT---IPTEKPTIPTEKPTISTEEPTTPTEETTISTEKPSIP 818
Query: 183 RRD----VERALTRFMAKTGETQSLF----KDDVSTF--------PLIAARPFTIPYLTA 226
E T T T+ L K +ST P I+ TIP
Sbjct: 819 MEKPTLPTEETTTSVEETTISTEKLTIPMEKPTISTEKPTIPTEKPTISPEKLTIPTEKL 878
Query: 227 LLPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGE 286
+P+E +EET S + TE IS E E ++ + P++ E
Sbjct: 879 TIPTEKPTIPIEETTISTEKLTIPTEKPT--ISPEKPTISTEKPTIPTEKPTIP----TE 932
Query: 287 ENIIDNPYLR-PVKKPKIRRKK 307
E I L P +KP I +K
Sbjct: 933 ETTISTEKLTIPTEKPTISPEK 954
>gi|89353295 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1a [Homo sapiens]
Length = 575
Score = 33.9 bits (76), Expect = 0.19
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 207 DVSTFPLIAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLAL--HISMEDSG 264
+ + FPL RPF IP+L A LP + Q E + +QT ++ LA H+ + S
Sbjct: 135 EATNFPL---RPFVIPFLKANLP----LLQRELLHCARAAKQTPSQYLAQHEHLLLNTSI 187
Query: 265 AEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKKPKIRRKK 307
A ++S L +G R E +N + R P+ K+
Sbjct: 188 ASPADSSELLMEVHGNGKRPSPERREENSFDRDTIAPEPPAKR 230
>gi|74229008 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1c [Homo sapiens]
Length = 595
Score = 33.9 bits (76), Expect = 0.19
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 207 DVSTFPLIAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLAL--HISMEDSG 264
+ + FPL RPF IP+L A LP + Q E + +QT ++ LA H+ + S
Sbjct: 155 EATNFPL---RPFVIPFLKANLP----LLQRELLHCARAAKQTPSQYLAQHEHLLLNTSI 207
Query: 265 AEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKKPKIRRKK 307
A ++S L +G R E +N + R P+ K+
Sbjct: 208 ASPADSSELLMEVHGNGKRPSPERREENSFDRDTIAPEPPAKR 250
>gi|4826663 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1b [Homo sapiens]
Length = 604
Score = 33.9 bits (76), Expect = 0.19
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 207 DVSTFPLIAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLAL--HISMEDSG 264
+ + FPL RPF IP+L A LP + Q E + +QT ++ LA H+ + S
Sbjct: 164 EATNFPL---RPFVIPFLKANLP----LLQRELLHCARAAKQTPSQYLAQHEHLLLNTSI 216
Query: 265 AEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKKPKIRRKK 307
A ++S L +G R E +N + R P+ K+
Sbjct: 217 ASPADSSELLMEVHGNGKRPSPERREENSFDRDTIAPEPPAKR 259
>gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1
[Homo sapiens]
Length = 1849
Score = 33.1 bits (74), Expect = 0.32
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 59 ETLTEMLQSYISEI-GRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRM 117
E+ + S I E+ RS+ + T T T+S I E G NVDT YA Q
Sbjct: 1481 ESFDAVADSGIEEVDSRSSSDHHLETTSTISTVSSISTLSSEGGENVDTCTVYAD-GQAF 1539
Query: 118 VITAPPVTNQP 128
++ PPV +P
Sbjct: 1540 MVDKPPVPPKP 1550
>gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens]
Length = 978
Score = 32.7 bits (73), Expect = 0.42
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 141 PHPPHIPSHFPEFPDPHTYIKTPTYREPVSDY 172
PHP + SH+P+ P P Y+++ Y +P DY
Sbjct: 714 PHPQPLFSHYPQ-PSPPQYLQSGPYTQPPPDY 744
>gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens]
Length = 1106
Score = 32.7 bits (73), Expect = 0.42
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 141 PHPPHIPSHFPEFPDPHTYIKTPTYREPVSDY 172
PHP + SH+P+ P P Y+++ Y +P DY
Sbjct: 842 PHPQPLFSHYPQ-PSPPQYLQSGPYTQPPPDY 872
>gi|4504817 potassium voltage-gated channel, shaker-related
subfamily, member 4 [Homo sapiens]
Length = 653
Score = 32.7 bits (73), Expect = 0.42
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 217 RPFTIPYLTALLPSELE---MQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVL 273
R + P+ + L+PS E ++++ E + E++E+ + E + S +D G E T +L
Sbjct: 98 RQSSFPHCSDLMPSGSEEKILRELSEEEEDEEEEEEEEEEGRFYYSEDDHGDECSYTDLL 157
Query: 274 QQNPSLSG 281
Q+ G
Sbjct: 158 PQDEGGGG 165
>gi|7662292 SPTF-associated factor 65 gamma [Homo sapiens]
Length = 414
Score = 32.0 bits (71), Expect = 0.72
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 34 RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPT 89
R+ L V+++L AGF+ A ++ +ETLT++ Y + + + + AR T
Sbjct: 155 RQLLYQAVATILAHAGFDCANESVLETLTDVAHEYCLKFTKLLRFAVDREARLGQT 210
>gi|122937341 hypothetical protein LOC388960 [Homo sapiens]
Length = 922
Score = 31.6 bits (70), Expect = 0.94
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 21/143 (14%)
Query: 119 ITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPH-TYIKTPTYREPVSDYQVLRE 177
+T P QP++ KA P P +P P + T + REPVS
Sbjct: 777 LTGPATPAQPISAKATQPSSANPTQPTVPQSAASRPSAYKTSSCSSLQREPVS------- 829
Query: 178 KAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQM 237
A + R + + +F+ + D S P +P T+P ++ + + +Q
Sbjct: 830 TAVTSLRSLPKPQNQFLIQ----------DFSLQPRPWRKP-TVP--EPVMSTPITEEQR 876
Query: 238 EETDSSEQDEQTDTENLALHISM 260
E ++ ++ Q + EN A + S+
Sbjct: 877 PEREAMKRKAQQERENAAKYTSL 899
>gi|5454106 TBP-related factor 10 [Homo sapiens]
Length = 218
Score = 30.8 bits (68), Expect = 1.6
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 40 VVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCE------HTARTQP----- 88
V L AGFE+++ + ++ Q +IS+I A +C+ ++R++
Sbjct: 134 VTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDRKY 193
Query: 89 --TLSDIVVTLVEMGFNV 104
T+ D+ L E G NV
Sbjct: 194 TLTMEDLTPALSEYGINV 211
>gi|54607116 leiomodin 3 (fetal) [Homo sapiens]
Length = 560
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 234 MQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEEN 288
+Q+ +E D E+D+ D E ED G E E T+ ++ + RN E N
Sbjct: 140 IQETDEEDEEEEDDDDDDEG-------EDDGEESEETNREEEGKAKEQIRNCENN 187
>gi|188536047 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c1 [Homo sapiens]
Length = 1105
Score = 30.4 bits (67), Expect = 2.1
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 5 AATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVETLTEM 64
AA AG GG GT G+ S A LA R + G + S ET+++
Sbjct: 2 AAAAGGGGPGTAVGATGSGIAAAAAGLAVYRR---------KDGGPATKFWESPETVSQ- 51
Query: 65 LQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVE-----MGFNVDTLPAYAK 112
L S +G+ K Y A T TL+ +VV L++ G +V T PA+ K
Sbjct: 52 LDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHV-TNPAFTK 103
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 30.4 bits (67), Expect = 2.1
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 228 LPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEE 287
L S+ E ++ +E D ++DE + E+ S ED G E++S ++ S G N E+
Sbjct: 634 LQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSS---EDESEDGDENEED 690
Query: 288 N 288
+
Sbjct: 691 D 691
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 30.4 bits (67), Expect = 2.1
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 228 LPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEE 287
L S+ E ++ +E D ++DE + E+ S ED G E++S ++ S G N E+
Sbjct: 634 LQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSS---EDESEDGDENEED 690
Query: 288 N 288
+
Sbjct: 691 D 691
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 30.4 bits (67), Expect = 2.1
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 228 LPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEE 287
L S+ E ++ +E D ++DE + E+ S ED G E++S ++ S G N E+
Sbjct: 671 LQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSS---EDESEDGDENEED 727
Query: 288 N 288
+
Sbjct: 728 D 728
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 30.4 bits (67), Expect = 2.1
Identities = 41/163 (25%), Positives = 62/163 (38%), Gaps = 39/163 (23%)
Query: 2 ADAAATAGA--GGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSL-----------LTEA 48
AD+ ATA A G GT S + L ++ +Q VS + TE
Sbjct: 1172 ADSKATAPAYKPGRGTGVNSNSEKHADHRSTLTKKMHIQSAVSKMNPGEKEPIHRGTTEV 1231
Query: 49 GFESAEKASVETLTEMLQSYISEIGRSAKSYC-----EHTAR------------TQPTLS 91
+S ET+ ML S SE R K+ EH A+ + P+LS
Sbjct: 1232 NIDS------ETVHRMLLSAPSENDRVQKNLKNTAAEEHVAQGDATLEHSTNLDSSPSLS 1285
Query: 92 DIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKAL 134
+ V + ++ D +P + KR+ V+ + P AL
Sbjct: 1286 SVTVVPLRESYDPDVIPLFDKRT---VLEGSTASTSPADHSAL 1325
>gi|28872803 myeloid translocation gene on chromosome 16 isoform
MTG16a [Homo sapiens]
Length = 653
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 207 DVSTFPLIAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALH--ISMEDSG 264
+ + FPL RPF IP+L A LP + Q E + +QT + LA H + ++ S
Sbjct: 222 EATNFPL---RPFVIPFLKANLP----LLQRELLHCARLAKQTPAQYLAQHEQLLLDASA 274
Query: 265 AEKENTSVLQQNPSLSGSRNGEENIIDN 292
+ ++S L + +G R + +N
Sbjct: 275 SSPIDSSELLLEVNENGKRRTPDRTKEN 302
>gi|28872805 myeloid translocation gene on chromosome 16 isoform
MTG16b [Homo sapiens]
Length = 567
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 207 DVSTFPLIAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALH--ISMEDSG 264
+ + FPL RPF IP+L A LP + Q E + +QT + LA H + ++ S
Sbjct: 136 EATNFPL---RPFVIPFLKANLP----LLQRELLHCARLAKQTPAQYLAQHEQLLLDASA 188
Query: 265 AEKENTSVLQQNPSLSGSRNGEENIIDN 292
+ ++S L + +G R + +N
Sbjct: 189 SSPIDSSELLLEVNENGKRRTPDRTKEN 216
>gi|55956904 mitogen-activated protein kinase kinase kinase 4 isoform
a [Homo sapiens]
Length = 1608
Score = 30.4 bits (67), Expect = 2.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 126 NQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP 163
+ PVT L +N P P +P + P+PH I TP
Sbjct: 1134 HSPVTGLYLAIHRNSPRPMKVPRCHSDPPNPHLIIPTP 1171
>gi|55956902 mitogen-activated protein kinase kinase kinase 4 isoform
b [Homo sapiens]
Length = 1558
Score = 30.4 bits (67), Expect = 2.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 126 NQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP 163
+ PVT L +N P P +P + P+PH I TP
Sbjct: 1134 HSPVTGLYLAIHRNSPRPMKVPRCHSDPPNPHLIIPTP 1171
>gi|11386193 zinc finger protein 197 isoform 1 [Homo sapiens]
Length = 1029
Score = 30.4 bits (67), Expect = 2.1
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 118 VITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLRE 177
V++AP T PV P + A + PHPP T + ++P D
Sbjct: 144 VVSAPGTTLPPVLPGSHIAAEICPHPP-------------TDLVAFNLQDPQHDSPAPEA 190
Query: 178 KAASQRRDVERALTRFMAKTGETQSL 203
A SQ + L M T + Q L
Sbjct: 191 SALSQEENPRNQLMALMLLTAQPQEL 216
>gi|68800230 zinc finger protein 197 isoform 2 [Homo sapiens]
Length = 267
Score = 30.4 bits (67), Expect = 2.1
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 118 VITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLRE 177
V++AP T PV P + A + PHPP T + ++P D
Sbjct: 144 VVSAPGTTLPPVLPGSHIAAEICPHPP-------------TDLVAFNLQDPQHDSPAPEA 190
Query: 178 KAASQRRDVERALTRFMAKTGETQSL 203
A SQ + L M T + Q L
Sbjct: 191 SALSQEENPRNQLMALMLLTAQPQEL 216
>gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens]
Length = 520
Score = 30.0 bits (66), Expect = 2.7
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 101 GFNVDTLPAYAKRSQRM-----VITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPD 155
GFN DT AY ++ +R+ VI TN+ + T N +PS EF
Sbjct: 164 GFNEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITVQQGRTG--NSEKETALPSTKAEFTS 221
Query: 156 PHTYIKT---PTYREP----VSDYQVLREKAASQRRDVERALTRFMAKTGETQ 201
P + KT P+ R P V + + +RR E + + +++ T+
Sbjct: 222 PPSLFKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSERSATE 274
>gi|13786123 HMG-box transcription factor TCF-3 [Homo sapiens]
Length = 588
Score = 30.0 bits (66), Expect = 2.7
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 108 PAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYRE 167
P+ A S ++ + P P+TP +T + P P+H DP T I P +
Sbjct: 170 PSPAHLSNKVPVVQHPHHMHPLTP-LITYSNDHFSPGSPPTHLSPEIDPKTGIPRPPHPS 228
Query: 168 PVSDYQVLREKAASQ 182
+S Y L A Q
Sbjct: 229 ELSPYYPLSPGAVGQ 243
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.125 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,549,794
Number of Sequences: 37866
Number of extensions: 524478
Number of successful extensions: 2673
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 2596
Number of HSP's gapped (non-prelim): 148
length of query: 310
length of database: 18,247,518
effective HSP length: 102
effective length of query: 208
effective length of database: 14,385,186
effective search space: 2992118688
effective search space used: 2992118688
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.