TAF3 5152

Name: TAF3	Sequence: fasta or formatted (929aa)		NCBI GI: 151301171
Description: RNA polymerase II transcription factor TAFII140		Referenced in: PHD Finger Proteins RNA Polymerase and General Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.4 59 3 C cysteine 1.4 13 1 D aspartate 5.4 50 2 E glutamate 10.3 96 6 F phenylalanine 1.8 17 1 G glycine 4.0 37 2 H histidine 1.6 15 1 I isoleucine 3.6 33 2 K lysine 14.3 133 5 L leucine 6.7 62 2 M methionine 1.8 17 1 N asparagine 2.0 19 2 P proline 11.7 109 3 Q glutamine 3.1 29 2 R arginine 4.2 39 1 S serine 8.3 77 3 T threonine 5.2 48 2 V valine 5.9 55 2 W tryptophan 0.9 8 1 Y tyrosine 1.4 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 RNA polymerase II transcription factor TAFII140 [Ho... NEFH 0.055 neurofilament, heavy polypeptide 200kDa TTN 0.046 titin isoform N2-A ANKRD12 0.041 ankyrin repeat domain 12 isoform 2 ANKRD12 0.041 ankyrin repeat domain 12 isoform 1 LOC100133599 0.040 PREDICTED: hypothetical protein SFRS12 0.039 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.039 splicing factor, arginine/serine-rich 12 isoform b [... UPF3B 0.037 UPF3 regulator of nonsense transcripts homolog B iso... LOC100133599 0.036 PREDICTED: hypothetical protein LOC100286959 0.034 PREDICTED: hypothetical protein XP_002343921 UPF3B 0.034 UPF3 regulator of nonsense transcripts homolog B iso... EIF5B 0.033 eukaryotic translation initiation factor 5B TOP1 0.032 DNA topoisomerase I THOC2 0.032 THO complex 2 MAP1B 0.032 microtubule-associated protein 1B TRDN 0.032 triadin BRD4 0.031 bromodomain-containing protein 4 isoform long INCENP 0.030 inner centromere protein antigens 135/155kDa isofor... RBM25 0.030 RNA binding motif protein 25 INCENP 0.029 inner centromere protein antigens 135/155kDa isofor... LOC283767 0.029 golgi autoantigen, golgin subfamily a-like LOC283685 0.029 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC727832 0.028 golgi autoantigen, golgin subfamily a-like LOC645202 0.028 PREDICTED: hypothetical protein LOC645202 LOC440243 0.028 PREDICTED: Putative golgin subfamily A member 6-lik... BPTF 0.027 bromodomain PHD finger transcription factor isoform ... RNF20 0.027 ring finger protein 20 CALD1 0.026 caldesmon 1 isoform 1 ACIN1 0.026 apoptotic chromatin condensation inducer 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.