TAF8 137

Name: TAF8	Sequence: fasta or formatted (310aa)		NCBI GI: 104485446
Description: TBP-associated factor 8		Referenced in: RNA Polymerase and General Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.7 27 3 C cysteine 0.3 1 1 D aspartate 4.5 14 2 E glutamate 8.1 25 2 F phenylalanine 2.6 8 1 G glycine 4.2 13 2 H histidine 2.3 7 1 I isoleucine 3.9 12 2 K lysine 4.8 15 2 L leucine 7.7 24 2 M methionine 2.6 8 1 N asparagine 3.5 11 1 P proline 7.7 24 2 Q glutamine 5.2 16 2 R arginine 6.5 20 3 S serine 9.7 30 2 T threonine 9.4 29 1 V valine 5.5 17 3 W tryptophan 0.0 0 0 Y tyrosine 2.9 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 TBP-associated factor 8 TAF3 0.037 RNA polymerase II transcription factor TAFII140 [Ho... C2orf71 0.019 hypothetical protein LOC388939 KCNA5 0.017 potassium voltage-gated channel, shaker-related subf... ZAN 0.015 zonadhesin isoform 3 ZAN 0.015 zonadhesin isoform 6 CBFA2T2 0.015 core-binding factor, runt domain, alpha subunit 2; t... CBFA2T2 0.015 core-binding factor, runt domain, alpha subunit 2; t... CBFA2T2 0.015 core-binding factor, runt domain, alpha subunit 2; tr... SHANK2 0.014 SH3 and multiple ankyrin repeat domains 2 isoform 1... GLI1 0.014 GLI family zinc finger 1 isoform 2 GLI1 0.014 GLI family zinc finger 1 isoform 1 KCNA4 0.014 potassium voltage-gated channel, shaker-related subfa... SUPT7L 0.012 SPTF-associated factor 65 gamma C2orf78 0.012 hypothetical protein LOC388960 TAF10 0.010 TBP-related factor 10 LMOD3 0.010 leiomodin 3 (fetal) SMARCC1 0.009 SWI/SNF-related matrix-associated actin-dependent r... UBTF 0.009 upstream binding transcription factor, RNA polymera... UBTF 0.009 upstream binding transcription factor, RNA polymera... UBTF 0.009 upstream binding transcription factor, RNA polymerase... BOD1L 0.009 biorientation of chromosomes in cell division 1-like... CBFA2T3 0.009 myeloid translocation gene on chromosome 16 isoform ... CBFA2T3 0.009 myeloid translocation gene on chromosome 16 isoform ... MAP3K4 0.009 mitogen-activated protein kinase kinase kinase 4 iso... MAP3K4 0.009 mitogen-activated protein kinase kinase kinase 4 iso... ZNF197 0.009 zinc finger protein 197 isoform 1 ZNF197 0.009 zinc finger protein 197 isoform 2 FIP1L1 0.009 FIP1 like 1 isoform 3 TCF7L1 0.009 HMG-box transcription factor TCF-3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.