Guide to the Human Genome
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Name: FIP1L1 Sequence: fasta or formatted (520aa) NCBI GI: 201023341
Description:

FIP1 like 1 isoform 3

Not currently referenced in the text

Other entries for this name:
alt prot {588aa} FIP1 like 1 isoform 2
alt prot {594aa} FIP1 like 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         28           1
 C cysteine            0.2          1           1
 D aspartate           6.9         36           3
 E glutamate          11.9         62           4
 F phenylalanine       2.5         13           2
 G glycine             7.5         39           2
 H histidine           2.5         13           1
 I isoleucine          3.1         16           1
 K lysine              5.2         27           2
 L leucine             4.0         21           2
 M methionine          0.4          2           1
 N asparagine          3.7         19           2
 P proline            10.8         56           4
 Q glutamine           1.5          8           2
 R arginine           10.2         53           3
 S serine              9.2         48           2
 T threonine           6.5         34           2
 V valine              4.6         24           1
 W tryptophan          1.0          5           1
 Y tyrosine            2.9         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FIP1 like 1 isoform 3 
FIP1L1                0.963   FIP1 like 1 isoform 2 
FIP1L1                0.961   FIP1 like 1 isoform 1 
RBM25                 0.065   RNA binding motif protein 25 
ZC3H13                0.064   zinc finger CCCH-type containing 13 
RNASEN                0.059   ribonuclease III, nuclear isoform 2 
LOC100286959          0.056   PREDICTED: hypothetical protein XP_002343921 
LOC100131202          0.056   PREDICTED: hypothetical protein 
PRPF38B               0.055   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
LOC100131202          0.054   PREDICTED: hypothetical protein 
RNASEN                0.050   ribonuclease III, nuclear isoform 1 
KIAA0182              0.049   genetic suppressor element 1 isoform 2 
KIAA0182              0.049   genetic suppressor element 1 isoform 1 
ZC3H18                0.049   zinc finger CCCH-type containing 18 
LOC100288837          0.048   PREDICTED: hypothetical protein XP_002343931, parti...
SFRS12                0.048   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.048   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100134067          0.045   PREDICTED: hypothetical protein 
LOC100133599          0.044   PREDICTED: hypothetical protein 
DIDO1                 0.044   death inducer-obliterator 1 isoform c 
RBBP6                 0.044   retinoblastoma-binding protein 6 isoform 1 
LOC100133599          0.043   PREDICTED: hypothetical protein 
PHF3                  0.043   PHD finger protein 3 
YLPM1                 0.041   YLP motif containing 1 
LOC100170229          0.040   hypothetical protein LOC100170229 
CROP                  0.040   cisplatin resistance-associated overexpressed protei...
CROP                  0.040   cisplatin resistance-associated overexpressed protei...
DDX23                 0.039   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
RBBP6                 0.039   retinoblastoma-binding protein 6 isoform 2 
BAT2D1                0.039   HBxAg transactivated protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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