Guide to the Human Genome
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Name: BOD1L Sequence: fasta or formatted (3051aa) NCBI GI: 87299628
Description:

biorientation of chromosomes in cell division 1-like

Referenced in:

Spindle, M phase, and Meiosis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6        201           3
 C cysteine            1.2         38           1
 D aspartate           6.3        192           3
 E glutamate          12.6        385           8
 F phenylalanine       0.9         26           1
 G glycine             6.7        204           2
 H histidine           2.1         65           1
 I isoleucine          3.6        109           3
 K lysine              9.3        285           3
 L leucine             5.4        165           2
 M methionine          1.5         47           2
 N asparagine          4.1        125           3
 P proline             5.2        160           6
 Q glutamine           3.5        107           2
 R arginine            4.3        130           3
 S serine             11.6        354           3
 T threonine           7.8        239           3
 V valine              6.3        191           3
 W tryptophan          0.1          2           1
 Y tyrosine            0.9         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   biorientation of chromosomes in cell division 1-like... 
BOD1                  0.028   biorientation of chromosomes in cell division 1 isof...
BOD1                  0.017   biorientation of chromosomes in cell division 1 iso...
ANKRD11               0.017   ankyrin repeat domain 11 
LOC729792             0.016   PREDICTED: hypothetical protein 
LOC100294136          0.016   PREDICTED: hypothetical protein 
LOC100294091          0.016   PREDICTED: hypothetical protein 
LOC100294501          0.015   PREDICTED: hypothetical protein 
LOC100294238          0.015   PREDICTED: hypothetical protein 
LOC100294204          0.015   PREDICTED: hypothetical protein 
LOC729792             0.015   PREDICTED: hypothetical protein 
LOC730401             0.015   PREDICTED: hypothetical protein 
LOC100294249          0.015   PREDICTED: hypothetical protein XP_002344067 
LOC729792             0.015   PREDICTED: hypothetical protein 
TCHH                  0.015   trichohyalin 
NEFH                  0.015   neurofilament, heavy polypeptide 200kDa 
ATRX                  0.014   transcriptional regulator ATRX isoform 2 
ATRX                  0.014   transcriptional regulator ATRX isoform 1 
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
RBBP6                 0.014   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.014   retinoblastoma-binding protein 6 isoform 1 
ANKRD12               0.013   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.013   ankyrin repeat domain 12 isoform 1 
MYH9                  0.013   myosin, heavy polypeptide 9, non-muscle 
MYH13                 0.013   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CENPE                 0.013   centromere protein E 
CCDC88A               0.013   coiled-coil domain containing 88A isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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