Guide to the Human Genome
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Name: DMKN Sequence: fasta or formatted (416aa) NCBI GI: 186928825
Description:

dermokine isoform 3 precursor

Referenced in:

Skin and Related Tissues

Other entries for this name:
alt prot [398aa] dermokine isoform 5 precursor
alt prot [386aa] dermokine isoform 4 precursor
alt prot [189aa] dermokine isoform 6
alt prot [137aa] dermokine isoform 7
alt prot [476aa] dermokine isoform 2 precursor
alt prot [90aa] dermokine isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         28           2
 C cysteine            1.0          4           1
 D aspartate           2.4         10           1
 E glutamate           4.8         20           2
 F phenylalanine       2.6         11           1
 G glycine            26.4        110           3
 H histidine           2.2          9           1
 I isoleucine          2.4         10           1
 K lysine              2.6         11           1
 L leucine             4.3         18           3
 M methionine          1.0          4           1
 N asparagine          7.2         30           3
 P proline             4.6         19           3
 Q glutamine           4.3         18           1
 R arginine            3.6         15           1
 S serine             15.1         63           3
 T threonine           3.1         13           1
 V valine              3.1         13           1
 W tryptophan          1.7          7           1
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dermokine isoform 3 precursor 
DMKN                  0.944   dermokine isoform 5 precursor 
DMKN                  0.910   dermokine isoform 4 precursor 
DMKN                  0.894   dermokine isoform 2 precursor 
DMKN                  0.143   dermokine isoform 6 
LOR                   0.095   loricrin 
KRT9                  0.094   keratin 9 
HRNR                  0.093   hornerin 
FLG2                  0.082   filaggrin family member 2 
KRT10                 0.081   keratin 10 
FUS                   0.081   fusion (involved in t(12;16) in malignant liposarcoma...
KRT1                  0.075   keratin 1 
COL3A1                0.074   collagen type III alpha 1 preproprotein 
KRT2                  0.073   keratin 2 
TAF15                 0.067   TBP-associated factor 15 isoform 2 
TAF15                 0.067   TBP-associated factor 15 isoform 1 
HNRNPA3               0.065   heterogeneous nuclear ribonucleoprotein A3 
COL5A3                0.065   collagen, type V, alpha 3 preproprotein 
COL1A2                0.063   alpha 2 type I collagen 
IRS4                  0.063   insulin receptor substrate 4 
COL1A1                0.062   alpha 1 type I collagen preproprotein 
LOC100293055          0.062   PREDICTED: similar to COL22A1 protein 
COL22A1               0.062   collagen, type XXII, alpha 1 
ARID1B                0.062   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.062   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.062   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
HNRNPA1               0.059   heterogeneous nuclear ribonucleoprotein A1 isoform b...
TRO                   0.059   trophinin isoform 5 
COL5A2                0.059   alpha 2 type V collagen preproprotein 
ILF3                  0.058   interleukin enhancer binding factor 3 isoform d [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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