Guide to the Human Genome
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Name: DMKN Sequence: fasta or formatted (90aa) NCBI GI: 78486558
Description:

dermokine isoform 1 precursor

Referenced in:

Skin and Related Tissues

Other entries for this name:
alt prot [416aa] dermokine isoform 3 precursor
alt prot [398aa] dermokine isoform 5 precursor
alt prot [386aa] dermokine isoform 4 precursor
alt prot [189aa] dermokine isoform 6
alt prot [137aa] dermokine isoform 7
alt prot [476aa] dermokine isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         12           1
 C cysteine            0.0          0           0
 D aspartate           2.2          2           1
 E glutamate           0.0          0           0
 F phenylalanine       1.1          1           1
 G glycine            11.1         10           2
 H histidine           2.2          2           1
 I isoleucine          0.0          0           0
 K lysine              6.7          6           1
 L leucine            11.1         10           6
 M methionine          2.2          2           1
 N asparagine          4.4          4           1
 P proline             5.6          5           1
 Q glutamine           6.7          6           1
 R arginine            3.3          3           1
 S serine             11.1         10           3
 T threonine           4.4          4           1
 V valine              4.4          4           1
 W tryptophan          4.4          4           1
 Y tyrosine            5.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dermokine isoform 1 precursor 
DMKN                  0.665   dermokine isoform 6 
DMKN                  0.665   dermokine isoform 2 precursor 
DMKN                  0.610   dermokine isoform 7 
TOP3A                 0.030   topoisomerase (DNA) III alpha 
EWSR1                 0.024   Ewing sarcoma breakpoint region 1 isoform 1 
LOC100291943          0.018   PREDICTED: hypothetical protein XP_002344929 
LOC100290716          0.018   PREDICTED: hypothetical protein XP_002347730 
LOC100288794          0.018   PREDICTED: hypothetical protein XP_002343507 
HOXD3                 0.018   homeobox D3 
TAP1                  0.012   transporter 1, ATP-binding cassette, sub-family B [Ho...
NRIP1                 0.012   nuclear receptor interacting protein 1 
FUS                   0.006   fusion (involved in t(12;16) in malignant liposarcoma...
RTN4RL1               0.006   reticulon 4 receptor-like 1 
HRNR                  0.006   hornerin 
HMCN1                 0.006   hemicentin 1 
TXNDC5                0.006   thioredoxin domain containing 5 isoform 1 precursor ...
NMU                   0.006   neuromedin U 
EWSR1                 0.000   Ewing sarcoma breakpoint region 1 isoform 5 
EWSR1                 0.000   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.000   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.000   Ewing sarcoma breakpoint region 1 isoform 2 
FOXA1                 0.000   forkhead box A1 
EFNB3                 0.000   ephrin-B3 precursor 
REXO1                 0.000   transcription elongation factor B polypeptide 3 bin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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