Guide to the Human Genome
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Name: DMKN Sequence: fasta or formatted (476aa) NCBI GI: 33504489
Description:

dermokine isoform 2 precursor

Referenced in:

Skin and Related Tissues

Other entries for this name:
alt prot [416aa] dermokine isoform 3 precursor
alt prot [398aa] dermokine isoform 5 precursor
alt prot [386aa] dermokine isoform 4 precursor
alt prot [189aa] dermokine isoform 6
alt prot [137aa] dermokine isoform 7
alt prot [90aa] dermokine isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         38           2
 C cysteine            0.8          4           1
 D aspartate           2.3         11           1
 E glutamate           4.2         20           2
 F phenylalanine       2.9         14           1
 G glycine            23.1        110           3
 H histidine           2.1         10           1
 I isoleucine          2.1         10           2
 K lysine              3.6         17           1
 L leucine             4.8         23           3
 M methionine          0.6          3           1
 N asparagine          6.9         33           3
 P proline             5.5         26           3
 Q glutamine           4.8         23           1
 R arginine            2.9         14           1
 S serine             14.1         67           3
 T threonine           3.6         17           1
 V valine              3.6         17           1
 W tryptophan          2.3         11           1
 Y tyrosine            1.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dermokine isoform 2 precursor 
DMKN                  0.792   dermokine isoform 4 precursor 
DMKN                  0.782   dermokine isoform 5 precursor 
DMKN                  0.775   dermokine isoform 3 precursor 
DMKN                  0.348   dermokine isoform 6 
DMKN                  0.236   dermokine isoform 7 
DMKN                  0.112   dermokine isoform 1 precursor 
KRT9                  0.080   keratin 9 
HRNR                  0.079   hornerin 
LOR                   0.078   loricrin 
FUS                   0.068   fusion (involved in t(12;16) in malignant liposarcoma...
KRT10                 0.068   keratin 10 
FLG2                  0.066   filaggrin family member 2 
KRT1                  0.065   keratin 1 
COL3A1                0.064   collagen type III alpha 1 preproprotein 
TAF15                 0.058   TBP-associated factor 15 isoform 2 
TAF15                 0.058   TBP-associated factor 15 isoform 1 
KRT2                  0.058   keratin 2 
HNRNPA3               0.057   heterogeneous nuclear ribonucleoprotein A3 
IRS4                  0.056   insulin receptor substrate 4 
COL5A3                0.055   collagen, type V, alpha 3 preproprotein 
COL1A1                0.053   alpha 1 type I collagen preproprotein 
HNRNPA1               0.052   heterogeneous nuclear ribonucleoprotein A1 isoform b...
ARID1B                0.051   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.051   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.051   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
ILF3                  0.051   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.051   interleukin enhancer binding factor 3 isoform a [Hom...
PPP1R10               0.049   protein phosphatase 1, regulatory subunit 10 
COL1A2                0.049   alpha 2 type I collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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