Search of human proteins with 18426975

Search of human proteins with 18426975

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|18426975 major histocompatibility complex, class II, DQ
alpha 1 precursor [Homo sapiens]
         (255 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|18426975 major histocompatibility complex, class II, DQ alpha...   524   e-149
gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]    468   e-132
gi|113430811 PREDICTED: similar to major histocompatibility comp...   468   e-132
gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa...   466   e-132
gi|169217612 PREDICTED: similar to major histocompatibility comp...   464   e-131
gi|239740747 PREDICTED: similar to major histocompatibility comp...   464   e-131
gi|239740697 PREDICTED: similar to major histocompatibility comp...   464   e-131
gi|11095447 major histocompatibility complex, class II, DQ alpha...   463   e-131
gi|239740861 PREDICTED: similar to major histocompatibility comp...   454   e-128
gi|239513953 PREDICTED: similar to major histocompatibility comp...   454   e-128
gi|24797074 major histocompatibility complex, class II, DP alpha...   291   4e-79
gi|4504401 major histocompatibility complex, class II, DO alpha ...   288   2e-78
gi|169218140 PREDICTED: similar to major histocompatibility comp...   283   8e-77
gi|52426774 major histocompatibility complex, class II, DR alpha...   278   3e-75
gi|239752547 PREDICTED: similar to major histocompatibility comp...   215   3e-56
gi|18765715 major histocompatibility complex, class II, DM alpha...   100   2e-21
gi|239758095 PREDICTED: similar to major histocompatibility comp...    74   9e-14
gi|239740749 PREDICTED: similar to major histocompatibility comp...    74   9e-14
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...    73   2e-13
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...    73   2e-13
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...    73   2e-13
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...    73   2e-13
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...    73   2e-13
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...    73   3e-13
gi|239740920 PREDICTED: similar to major histocompatibility comp...    73   3e-13
gi|239740918 PREDICTED: similar to major histocompatibility comp...    73   3e-13
gi|18641375 major histocompatibility complex, class II, DR beta ...    73   3e-13
gi|52630344 major histocompatibility complex, class II, DR beta ...    72   4e-13
gi|239758090 PREDICTED: major histocompatibility complex, class ...    72   4e-13
gi|239740855 PREDICTED: similar to major histocompatibility comp...    72   4e-13

>gi|18426975 major histocompatibility complex, class II, DQ alpha 1
           precursor [Homo sapiens]
          Length = 255

 Score =  524 bits (1349), Expect = e-149
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV
Sbjct: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII
Sbjct: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240

Query: 241 QGLRSVGASRHQGPL 255
           QGLRSVGASRHQGPL
Sbjct: 241 QGLRSVGASRHQGPL 255


>gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]
          Length = 255

 Score =  468 bits (1205), Expect = e-132
 Identities = 230/255 (90%), Positives = 240/255 (94%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DLERKET W+ P F +F  FDPQ AL N+AV KHNLNI+IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVGL+GIVVGTV II
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 QGLRSVGASRHQGPL 255
           +GLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|113430811 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 255

 Score =  468 bits (1203), Expect = e-132
 Identities = 230/255 (90%), Positives = 240/255 (94%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DLERKET W+ P F +F  FDPQ AL N+AV KHNLNI+IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PS DEIYDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGL+GIVVGTV II
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 QGLRSVGASRHQGPL 255
           +GLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 255

 Score =  466 bits (1199), Expect = e-132
 Identities = 229/255 (89%), Positives = 239/255 (93%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DLERKET W+ P F +F  FDPQ AL N+AV KHNLNI+IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PS DEIYDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVGL+GIVVGTV II
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 QGLRSVGASRHQGPL 255
           +GLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|169217612 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 isoform 1 [Homo sapiens]
          Length = 254

 Score =  464 bits (1195), Expect = e-131
 Identities = 230/255 (90%), Positives = 240/255 (94%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQ+THEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DLERKET W+ P F +   FDPQ AL N+AV KHNLNI+IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGL+GIVVGTV II
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 QGLRSVGASRHQGPL 255
           +GLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239740747 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  464 bits (1195), Expect = e-131
 Identities = 230/255 (90%), Positives = 240/255 (94%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQ+THEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DLERKET W+ P F +   FDPQ AL N+AV KHNLNI+IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGL+GIVVGTV II
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 QGLRSVGASRHQGPL 255
           +GLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239740697 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  464 bits (1195), Expect = e-131
 Identities = 230/255 (90%), Positives = 240/255 (94%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQ+THEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DLERKET W+ P F +   FDPQ AL N+AV KHNLNI+IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGL+GIVVGTV II
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 QGLRSVGASRHQGPL 255
           +GLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|11095447 major histocompatibility complex, class II, DQ alpha 2
           [Homo sapiens]
          Length = 255

 Score =  463 bits (1191), Expect = e-131
 Identities = 228/255 (89%), Positives = 236/255 (92%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           MILNKALLLGALALT VMSPCGGEDIVADHVAS GVN YQ +GPSGQYTHEFDGDE+FYV
Sbjct: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DLE KET W+ P FSKF  FDPQ ALRNMAV KH L  M+++ NSTAATNEVPEVTVFSK
Sbjct: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPNTLICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLD+PLLKHWEPEIPAPMSELTET+VCALGLSVGLMGIVVGTVFII
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240

Query: 241 QGLRSVGASRHQGPL 255
           QGLRSVGASRHQG L
Sbjct: 241 QGLRSVGASRHQGLL 255


>gi|239740861 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  454 bits (1167), Expect = e-128
 Identities = 227/255 (89%), Positives = 235/255 (92%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQYTHEFDGDEQFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DL RKET W  P   +F  FDPQ AL N+AV KHNLN +IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPN LICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGL+GIVVGTVFII
Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239

Query: 241 QGLRSVGASRHQGPL 255
           +GLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239513953 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  454 bits (1167), Expect = e-128
 Identities = 227/255 (89%), Positives = 235/255 (92%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQYTHEFDGDEQFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DL RKET W  P   +F  FDPQ AL N+AV KHNLN +IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPN LICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGL+GIVVGTVFII
Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239

Query: 241 QGLRSVGASRHQGPL 255
           +GLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|24797074 major histocompatibility complex, class II, DP alpha 1
           precursor [Homo sapiens]
          Length = 260

 Score =  291 bits (745), Expect = 4e-79
 Identities = 142/251 (56%), Positives = 183/251 (72%), Gaps = 1/251 (0%)

Query: 5   KALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYVDLER 64
           +A++L AL+L  ++S  G   I ADHV++      Q + P+G++  EFD DE FYVDL++
Sbjct: 11  RAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDEDEMFYVDLDK 69

Query: 65  KETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVT 124
           KET W   EF +   F+ QG L N+A+  +NLN +I+R N T ATN+ PEVTVF K PV 
Sbjct: 70  KETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEVTVFPKEPVE 129

Query: 125 LGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSAD 184
           LGQPNTLIC +D  FPPV+N+TWL NG+ VTEGV+E+ FL ++D+SF K  YLTF+PSA+
Sbjct: 130 LGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAE 189

Query: 185 EIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFIIQGLR 244
           + YDC+VEHWGLDQPLLKHWE + P  M E TETV+CALGL +GL+GI+VGTV II+ LR
Sbjct: 190 DFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVGTVLIIKSLR 249

Query: 245 SVGASRHQGPL 255
           S    R QG L
Sbjct: 250 SGHDPRAQGTL 260


>gi|4504401 major histocompatibility complex, class II, DO alpha
           precursor [Homo sapiens]
          Length = 250

 Score =  288 bits (738), Expect = 2e-78
 Identities = 137/242 (56%), Positives = 173/242 (71%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           M L   L+LG   L T++SP       ADH+ S G   YQ YG SGQ+THEFD ++ F V
Sbjct: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DL++ E  WR PEF  F  FDPQG L  +A  K +L+I+++R N + A N  P VTV  K
Sbjct: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           S V LGQPN LIC+VDNIFPPV+NITWL NGQ+VTEGV++TSF S+ DH F K  YL F+
Sbjct: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PSA+++YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GL+G +VGTV II
Sbjct: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240

Query: 241 QG 242
            G
Sbjct: 241 MG 242


>gi|169218140 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 153

 Score =  283 bits (725), Expect = 8e-77
 Identities = 138/147 (93%), Positives = 142/147 (96%)

Query: 109 TNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSD 168
           T EVPEVTVFSKSPVTLGQPN LICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSD
Sbjct: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66

Query: 169 HSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVG 228
           HSFFKISYLT LPSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVG
Sbjct: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126

Query: 229 LMGIVVGTVFIIQGLRSVGASRHQGPL 255
           L+GIVVGTVFII+GLRSVGASRHQGPL
Sbjct: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153


>gi|52426774 major histocompatibility complex, class II, DR alpha
           precursor [Homo sapiens]
          Length = 254

 Score =  278 bits (711), Expect = 3e-75
 Identities = 136/255 (53%), Positives = 173/255 (67%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           M ++   +LG   +  +MS      I  +HV       Y     SG++  +FDGDE F+V
Sbjct: 1   MAISGVPVLGFFIIAVLMSAQESWAIKEEHVI-IQAEFYLNPDQSGEFMFDFDGDEIFHV 59

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           D+ +KET WR  EF +F  F+ QGAL N+AV K NL IM KR N T  TN  PEVTV + 
Sbjct: 60  DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPV L +PN LIC +D   PPVVN+TWL NG+ VT GVSET FL + DH F K  YL FL
Sbjct: 120 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL 179

Query: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240
           PS +++YDC+VEHWGLD+PLLKHWE + P+P+ E TE VVCALGL+VGL+GI++GT+FII
Sbjct: 180 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII 239

Query: 241 QGLRSVGASRHQGPL 255
           +GLR   A+  +GPL
Sbjct: 240 KGLRKSNAAERRGPL 254


>gi|239752547 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 130

 Score =  215 bits (547), Expect = 3e-56
 Identities = 110/131 (83%), Positives = 114/131 (87%), Gaps = 1/131 (0%)

Query: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQYTHEFDGDEQFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
           DL RKET W  P   +F  FDPQ AL N+AV KHNLN +IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTL 131
           SPVTLGQPN L
Sbjct: 120 SPVTLGQPNIL 130


>gi|18765715 major histocompatibility complex, class II, DM alpha
           precursor [Homo sapiens]
          Length = 261

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 9/202 (4%)

Query: 44  PSGQYTHEFDGDEQFYVDLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRY 103
           PS   +  +D D+ F+ D  +     R PEF+ +     QG    +   K     MI++ 
Sbjct: 55  PSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADWA--QEQGDAPAILFDKEFCEWMIQQI 112

Query: 104 N-----STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGV 158
                     +   P   VF+  P+  G+PNTL+C V N+FPP++ + W  +   V EG 
Sbjct: 113 GPKLDGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGF 171

Query: 159 SETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTET 218
             T   +    SF   SYL F P   +I+ C V H       + +W P    P S+L E 
Sbjct: 172 GPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP-SDLLEN 230

Query: 219 VVCALGLSVGLMGIVVGTVFII 240
           V+C +   +G++GI+VG V II
Sbjct: 231 VLCGVAFGLGVLGIIVGIVLII 252


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 74.3 bits (181), Expect = 9e-14
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 91  VAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  + ++   +T      P VT+       L   N L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 151 GQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPA 210
           GQ  T GV  T  +   D +F  +  L   P   ++Y C VEH  L  P+   W  +  +
Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226

Query: 211 PMSELTETVVCALGLSVGLMGIVVGTVFIIQGL 243
             S++            G+ G V+G +F+  GL
Sbjct: 227 AQSKMLS----------GIGGFVLGLIFLGLGL 249


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 74.3 bits (181), Expect = 9e-14
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 91  VAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  + ++   +T      P VT+       L   N L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 151 GQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPA 210
           GQ  T GV  T  +   D +F  +  L   P   ++Y C VEH  L  P+   W  +  +
Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226

Query: 211 PMSELTETVVCALGLSVGLMGIVVGTVFIIQGL 243
             S++            G+ G V+G +F+  GL
Sbjct: 227 AQSKMLS----------GIGGFVLGLIFLGLGL 249


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 91  VAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163

Query: 151 GQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPA 210
           GQ    GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +
Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223

Query: 211 PMSELTETVVCALGLSVGLMGIVVGTVFIIQGL 243
             S++            G+ G V+G +F+  GL
Sbjct: 224 AQSKMLS----------GVGGFVLGLLFLGAGL 246


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 91  VAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163

Query: 151 GQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPA 210
           GQ    GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +
Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223

Query: 211 PMSELTETVVCALGLSVGLMGIVVGTVFIIQGL 243
             S++            G+ G V+G +F+  GL
Sbjct: 224 AQSKMLS----------GVGGFVLGLLFLGAGL 246


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 91  VAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 105 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 161

Query: 151 GQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPA 210
           GQ    GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +
Sbjct: 162 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 221

Query: 211 PMSELTETVVCALGLSVGLMGIVVGTVFIIQGL 243
             S++            G+ G V+G +F+  GL
Sbjct: 222 AQSKMLS----------GVGGFVLGLLFLGAGL 244


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 91  VAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163

Query: 151 GQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPA 210
           GQ    GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +
Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223

Query: 211 PMSELTETVVCALGLSVGLMGIVVGTVFIIQGL 243
             S++            G+ G V+G +F+  GL
Sbjct: 224 AQSKMLS----------GVGGFVLGLLFLGAGL 246


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 91  VAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 105 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 161

Query: 151 GQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPA 210
           GQ    GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +
Sbjct: 162 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 221

Query: 211 PMSELTETVVCALGLSVGLMGIVVGTVFIIQGL 243
             S++            G+ G V+G +F+  GL
Sbjct: 222 AQSKMLS----------GVGGFVLGLLFLGAGL 244


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFF 172
           PEVTV+      L   N L+C V   +P  + + W  NGQ    GV  T  +   D +F 
Sbjct: 113 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 172

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 173 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 222

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 223 VLGLLFLGAGL 233


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 91  VAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  + ++   +T      P VT+       L   N L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 151 GQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPA 210
            Q  T GV  T  +   D +F  +  L   P   ++Y C VEH  L  P++  W  +  +
Sbjct: 167 DQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSES 226

Query: 211 PMSELTETVVCALGLSVGLMGIVVGTVFIIQGL 243
             S++            G+ G V+G +F+  GL
Sbjct: 227 AQSKMLS----------GIGGFVLGLIFLGLGL 249


>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 91  VAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  + ++   +T      P VT+       L   N L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 151 GQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPA 210
            Q  T GV  T  +   D +F  +  L   P   ++Y C VEH  L  P++  W  +  +
Sbjct: 167 DQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSES 226

Query: 211 PMSELTETVVCALGLSVGLMGIVVGTVFIIQGL 243
             S++            G+ G V+G +F+  GL
Sbjct: 227 AQSKMLS----------GIGGFVLGLIFLGLGL 249


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFF 172
           P+VTV+     TL   N L+C V+  +P  + + W  N Q    GV  T  +   D +F 
Sbjct: 126 PKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W  +  +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLS----------GVGGF 235

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFF 172
           P+VTV+      L   N L+C V+  +P  + + W  NGQ    GV  T  +   D +F 
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLS----------GVGGF 235

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 236 VLGLLFLGTGL 246


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFF 172
           P+VTV+      L   N L+C V+  +P  + + W  NGQ    GV  T  +   D +F 
Sbjct: 138 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 197

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 198 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLS----------GVGGF 247

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 248 VLGLLFLGTGL 258


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFF 172
           P+VTV+      L   N L+C V   +P  + + W  NGQ    GV  T  +   D +F 
Sbjct: 127 PQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 186

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 187 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLS----------GVGGF 236

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 237 VLGLLFLGAGL 247


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,797,700
Number of Sequences: 37866
Number of extensions: 423574
Number of successful extensions: 1063
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 115
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.