LOC100294468 19738

Name: LOC100294468	Sequence: fasta or formatted (266aa)		NCBI GI: 239748785
Description: PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-9 beta chain		Referenced in: HLA and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.5 12 2 C cysteine 2.3 6 1 D aspartate 2.6 7 1 E glutamate 7.1 19 2 F phenylalanine 5.6 15 2 G glycine 9.4 25 2 H histidine 3.0 8 2 I isoleucine 1.5 4 1 K lysine 3.0 8 1 L leucine 9.8 26 2 M methionine 2.3 6 1 N asparagine 3.4 9 1 P proline 4.5 12 1 Q glutamine 5.3 14 1 R arginine 7.1 19 3 S serine 7.5 20 2 T threonine 6.0 16 1 V valine 10.5 28 2 W tryptophan 1.5 4 1 Y tyrosine 3.0 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.940 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.940 PREDICTED: similar to HLA class II histocompatibili... LOC100290966 0.908 PREDICTED: hypothetical protein XP_002346811 HLA-DRB5 0.900 major histocompatibility complex, class II, DR beta ... HLA-DRB3 0.894 major histocompatibility complex, class II, DR beta ... HLA-DRB1 0.891 major histocompatibility complex, class II, DR beta... LOC100294276 0.887 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.879 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.871 major histocompatibility complex, class II, DR beta ... LOC100294276 0.860 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.852 PREDICTED: similar to major histocompatibility comp... LOC100294189 0.814 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.814 PREDICTED: similar to HLA class II histocompatibili... LOC100294036 0.798 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB4 0.750 PREDICTED: major histocompatibility complex, class ... LOC100293977 0.610 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.610 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.607 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.605 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.605 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.599 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.591 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.591 PREDICTED: similar to major histocompatibility comp... HLA-DQB1 0.585 major histocompatibility complex, class II, DQ beta... LOC100133811 0.578 PREDICTED: similar to HLA class II histocompatibili... HLA-DPB1 0.555 major histocompatibility complex, class II, DP beta ... HLA-DOB 0.514 major histocompatibility complex, class II, DO beta p... LOC651845 0.447 PREDICTED: similar to MHC class II antigen LOC100133661 0.342 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.