LOC100294036 23483

Name: LOC100294036	Sequence: fasta or formatted (253aa)		NCBI GI: 239758092
Description: PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.3 11 2 C cysteine 2.8 7 1 D aspartate 2.4 6 1 E glutamate 6.3 16 2 F phenylalanine 6.7 17 2 G glycine 9.5 24 2 H histidine 2.4 6 2 I isoleucine 1.2 3 1 K lysine 3.6 9 1 L leucine 12.6 32 2 M methionine 2.4 6 1 N asparagine 2.4 6 1 P proline 5.9 15 1 Q glutamine 5.9 15 1 R arginine 4.7 12 1 S serine 7.1 18 2 T threonine 5.9 15 1 V valine 9.5 24 2 W tryptophan 1.6 4 1 Y tyrosine 2.8 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.887 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.887 PREDICTED: similar to HLA class II histocompatibili... LOC100294468 0.837 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB1 0.817 major histocompatibility complex, class II, DR beta... HLA-DRB3 0.803 major histocompatibility complex, class II, DR beta ... LOC100290966 0.801 PREDICTED: hypothetical protein XP_002346811 LOC100294276 0.795 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.791 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.779 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.777 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.775 major histocompatibility complex, class II, DR beta ... HLA-DRB5 0.773 major histocompatibility complex, class II, DR beta ... LOC100294189 0.755 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.755 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB4 0.648 PREDICTED: major histocompatibility complex, class ... LOC100293977 0.525 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.525 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.523 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.521 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.521 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.515 PREDICTED: similar to major histocompatibility comp... HLA-DQB1 0.507 major histocompatibility complex, class II, DQ beta... LOC100294318 0.503 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.503 PREDICTED: similar to major histocompatibility comp... HLA-DPB1 0.503 major histocompatibility complex, class II, DP beta ... LOC100133811 0.473 PREDICTED: similar to HLA class II histocompatibili... LOC651845 0.469 PREDICTED: similar to MHC class II antigen HLA-DOB 0.445 major histocompatibility complex, class II, DO beta p... LOC100133661 0.243 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.