Guide to the Human Genome
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Name: LOC100294161 Sequence: fasta or formatted (266aa) NCBI GI: 239740695
Description:

PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 1

Referenced in:

HLA and Related Proteins

Other entries for this name:
alt prot [264aa] PREDICTED: similar to HLA class II histocompatibility antigen, DR...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         11           2
 C cysteine            2.3          6           1
 D aspartate           2.6          7           1
 E glutamate           6.8         18           2
 F phenylalanine       6.0         16           2
 G glycine             9.8         26           2
 H histidine           2.6          7           2
 I isoleucine          1.5          4           1
 K lysine              3.0          8           1
 L leucine            10.2         27           2
 M methionine          2.3          6           1
 N asparagine          3.0          8           1
 P proline             4.5         12           1
 Q glutamine           6.0         16           1
 R arginine            6.4         17           2
 S serine              7.5         20           2
 T threonine           6.0         16           1
 V valine             10.5         28           2
 W tryptophan          1.9          5           1
 Y tyrosine            3.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to HLA class II histocompatibili... 
LOC100294189          1.000   PREDICTED: similar to HLA class II histocompatibili...
LOC100294468          0.937   PREDICTED: similar to HLA class II histocompatibili...
HLA-DRB3              0.899   major histocompatibility complex, class II, DR beta ...
HLA-DRB1              0.899   major histocompatibility complex, class II, DR beta...
LOC100290966          0.895   PREDICTED: hypothetical protein XP_002346811 
LOC100294275          0.887   PREDICTED: similar to major histocompatibility comp...
LOC100294276          0.880   PREDICTED: similar to major histocompatibility comp...
LOC100294275          0.876   PREDICTED: similar to major histocompatibility comp...
LOC100294189          0.874   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.874   PREDICTED: similar to HLA class II histocompatibili...
HLA-DRB5              0.874   major histocompatibility complex, class II, DR beta ...
LOC100294276          0.864   PREDICTED: similar to major histocompatibility comp...
HLA-DRB4              0.857   major histocompatibility complex, class II, DR beta ...
LOC100294036          0.843   PREDICTED: similar to HLA class II histocompatibili...
HLA-DRB4              0.736   PREDICTED: major histocompatibility complex, class ...
LOC100293977          0.602   PREDICTED: similar to major histocompatibility comp...
LOC100294191          0.602   PREDICTED: similar to major histocompatibility comp...
LOC100133583          0.598   PREDICTED: similar to major histocompatibility comp...
LOC100294278          0.598   PREDICTED: similar to major histocompatibility comp...
LOC100294115          0.598   PREDICTED: similar to major histocompatibility comp...
LOC100133583          0.595   PREDICTED: similar to major histocompatibility comp...
HLA-DQB1              0.587   major histocompatibility complex, class II, DQ beta...
LOC100294318          0.585   PREDICTED: similar to major histocompatibility comp...
LOC100294318          0.585   PREDICTED: similar to major histocompatibility comp...
LOC100133811          0.581   PREDICTED: similar to HLA class II histocompatibili...
HLA-DPB1              0.572   major histocompatibility complex, class II, DP beta ...
HLA-DOB               0.516   major histocompatibility complex, class II, DO beta p...
LOC651845             0.446   PREDICTED: similar to MHC class II antigen 
LOC100133661          0.329   PREDICTED: similar to MHC class II antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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