Search of human proteins with 17402888

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|17402888 neuronal pentraxin receptor [Homo sapiens]
         (500 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17402888 neuronal pentraxin receptor [Homo sapiens]                998   0.0  
gi|28195384 neuronal pentraxin II [Homo sapiens]                      417   e-116
gi|55770878 neuronal pentraxin I precursor [Homo sapiens]             370   e-102
gi|148886654 polydom [Homo sapiens]                                   133   4e-31
gi|240120161 G protein-coupled receptor 144 [Homo sapiens]            114   3e-25
gi|61966763 hypothetical protein LOC390667 [Homo sapiens]             104   2e-22
gi|167900484 pentraxin 3 [Homo sapiens]                                96   8e-20
gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens]       78   2e-14
gi|4502133 serum amyloid P component precursor [Homo sapiens]          74   3e-13
gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens]           63   7e-10
gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens]           63   7e-10
gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo sap...    63   7e-10
gi|59710093 G-protein coupled receptor 112 [Homo sapiens]              54   3e-07
gi|126723390 ankyrin repeat domain 24 [Homo sapiens]                   47   3e-05
gi|154146199 sal-like 3 [Homo sapiens]                                 44   3e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    42   0.001
gi|18079216 CASK interacting protein 1 [Homo sapiens]                  42   0.001
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      42   0.002
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      42   0.002
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    41   0.002
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    41   0.002
gi|191252785 centrobin, centrosomal BRCA2 interacting protein is...    41   0.002
gi|80861396 centrobin, centrosomal BRCA2 interacting protein iso...    41   0.002
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    41   0.003
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    41   0.003
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi...    41   0.003
gi|122937321 UNC homeobox [Homo sapiens]                               41   0.003
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    40   0.004
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    40   0.004
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    40   0.004

>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
          Length = 500

 Score =  998 bits (2579), Expect = 0.0
 Identities = 500/500 (100%), Positives = 500/500 (100%)

Query: 1   MKFLAVLLAAGMLAFLGAVICIIASVPLAASPARALPGGADNASVASGAAASPGPQRSLS 60
           MKFLAVLLAAGMLAFLGAVICIIASVPLAASPARALPGGADNASVASGAAASPGPQRSLS
Sbjct: 1   MKFLAVLLAAGMLAFLGAVICIIASVPLAASPARALPGGADNASVASGAAASPGPQRSLS 60

Query: 61  ALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGER 120
           ALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGER
Sbjct: 61  ALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGER 120

Query: 121 EELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMA 180
           EELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMA
Sbjct: 121 EELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMA 180

Query: 181 DGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLSAAPAPVSAVPTGLHSKMDQLEG 240
           DGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLSAAPAPVSAVPTGLHSKMDQLEG
Sbjct: 181 DGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLSAAPAPVSAVPTGLHSKMDQLEG 240

Query: 241 QLLAQVLALEKERVALSHSSRRQRQEVEKELDVLQGRVAELEHGSSAYSPPDAFKISIPI 300
           QLLAQVLALEKERVALSHSSRRQRQEVEKELDVLQGRVAELEHGSSAYSPPDAFKISIPI
Sbjct: 241 QLLAQVLALEKERVALSHSSRRQRQEVEKELDVLQGRVAELEHGSSAYSPPDAFKISIPI 300

Query: 301 RNNYMYARVRKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPME 360
           RNNYMYARVRKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPME
Sbjct: 301 RNNYMYARVRKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPME 360

Query: 361 LLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGIL 420
           LLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGIL
Sbjct: 361 LLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGIL 420

Query: 421 ILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWEDKLV 480
           ILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWEDKLV
Sbjct: 421 ILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWEDKLV 480

Query: 481 EAFGGATKAAFDVCKGRAKA 500
           EAFGGATKAAFDVCKGRAKA
Sbjct: 481 EAFGGATKAAFDVCKGRAKA 500


>gi|28195384 neuronal pentraxin II [Homo sapiens]
          Length = 431

 Score =  417 bits (1072), Expect = e-116
 Identities = 216/428 (50%), Positives = 286/428 (66%), Gaps = 19/428 (4%)

Query: 77  APAASAHPLP-PGPLFSRFLCTPLA-----AACPSGAQQGDAAGAAPGEREELLLLQSTA 130
           A AA A   P PG   SRF+CT L      A CP  A        +P E      L++  
Sbjct: 12  AVAAGAQDSPAPG---SRFVCTALPPEAVHAGCPLPAMPMQGGAQSPEEE-----LRAAV 63

Query: 131 EQLRQTALQQEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPR-RDTMADGPWDSPAL 189
            QLR+T +QQ+  + A ++ IRELTGKL RCE       +GAG   +DTM D P D   +
Sbjct: 64  LQLRETVVQQKETLGAQREAIRELTGKLARCEGLAGGKARGAGATGKDTMGDLPRDPGHV 123

Query: 190 ILELEDAVRALRDRIDRLEQELPARVNLSAAPAPVSAVPTGLHSKMDQLEGQLLAQVLAL 249
           + +L  +++ L+DR++ LE +L A V+ +  P     V   L  ++ +LE QLL +V  L
Sbjct: 124 VEQLSRSLQTLKDRLESLEHQLRANVSNAGLPGDFREV---LQQRLGELERQLLRKVAEL 180

Query: 250 EKERVALSHSSRRQRQEVEKELDVLQGRVAELEHGSSAYSPPDAFKISIPIRNNYMYARV 309
           E E+  L + +   RQ+ E  L+ L  RV ELE G+SA+  PDAFK+S+P+R NY+Y ++
Sbjct: 181 EDEKSLLHNETSAHRQKTESTLNALLQRVTELERGNSAFKSPDAFKVSLPLRTNYLYGKI 240

Query: 310 RKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPMELLINDKVAQ 369
           +K LPELYAFT C+WLRS S+  G GTPFSY+VPGQANEIVL+E G+ P+ELLINDKVAQ
Sbjct: 241 KKTLPELYAFTICLWLRS-SASPGIGTPFSYAVPGQANEIVLIEWGNNPIELLINDKVAQ 299

Query: 370 LPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQDTL 429
           LPL + D  WHHIC+ WTTRDG+W A+QDGE  G+GENLA WHPIKP G+LILGQEQDT+
Sbjct: 300 LPLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGTGENLAPWHPIKPGGVLILGQEQDTV 359

Query: 430 GGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWEDKLVEAFGGATKA 489
           GGRFDATQAFVG+++QFN+WD  L   +++ IANC+  + GN++PW D  V+ FGGA+K 
Sbjct: 360 GGRFDATQAFVGELSQFNIWDRVLRAQEIVNIANCSTNMPGNIIPWVDNNVDVFGGASKW 419

Query: 490 AFDVCKGR 497
             + C+ R
Sbjct: 420 PVETCEER 427


>gi|55770878 neuronal pentraxin I precursor [Homo sapiens]
          Length = 432

 Score =  370 bits (951), Expect = e-102
 Identities = 203/417 (48%), Positives = 276/417 (66%), Gaps = 28/417 (6%)

Query: 92  SRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEARIRADQDTI 151
           +RF+CT +    P  A    A+ AA G  E    L+S+  QLR+T LQQ+  I + ++TI
Sbjct: 28  TRFICTSV----PVDADMCAASVAAGGAEE----LRSSVLQLRETVLQQKETILSQKETI 79

Query: 152 RELTGKLGRCES--------GLPR---GLQGAGPRRDTMADGPWDSPALIL-ELEDAVRA 199
           RELT KLGRCES        G  R   G +  G  ++TM D      A  L +L   +++
Sbjct: 80  RELTAKLGRCESQSTLDPGAGEARAGGGRKQPGSGKNTMGDLSRTPAAETLSQLGQTLQS 139

Query: 200 LRDRIDRLEQELPARVNLSAAPAPVSAVPTGLHSKMDQLEGQLLAQVLALEKERVALSHS 259
           L+ R++ LEQ   +R+N S+     +++   L SK+D+LE Q+L++V  LE+ +     +
Sbjct: 140 LKTRLENLEQY--SRLNSSSQ---TNSLKDLLQSKIDELERQVLSRVNTLEEGKGG-PRN 193

Query: 260 SRRQRQEVEKELDVLQGRVAELEHGSSAYSPPDAFKISIPIRNNYMYARVRKALPELYAF 319
              +R ++E  L  L  R++ELE G     P D F+++ P+R NYMYA+V+K+LPE+YAF
Sbjct: 194 DTEERVKIETALTSLHQRISELEKGQKDNRPGDKFQLTFPLRTNYMYAKVKKSLPEMYAF 253

Query: 320 TACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPMELLINDKVAQLPLSLKDNGW 379
           T CMWL+S S+  G GTPFSY+VPGQANE+VL+E G+ PME+LINDKVA+LP  + D  W
Sbjct: 254 TVCMWLKS-SATPGVGTPFSYAVPGQANELVLIEWGNNPMEILINDKVAKLPFVINDGKW 312

Query: 380 HHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAF 439
           HHIC+ WTTRDG+W AYQDG   GSGENLA +HPIKP G+L+LGQEQDTLGG FDATQAF
Sbjct: 313 HHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQDTLGGGFDATQAF 372

Query: 440 VGDIAQFNLWDHALTPAQVLGIANC-TAPLLGNVLPWEDKLVEAFGGATKAAFDVCK 495
           VG++A FN+WD  LTP +V  +A C T  L GNV+ W +  +E +GGATK  F+ C+
Sbjct: 373 VGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHIEIYGGATKWTFEACR 429


>gi|148886654 polydom [Homo sapiens]
          Length = 3571

 Score =  133 bits (334), Expect = 4e-31
 Identities = 75/190 (39%), Positives = 103/190 (54%), Gaps = 7/190 (3%)

Query: 294  FKISIPIRNNYMYARVRKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLE 353
            F +   +   Y Y  +   LP L+A T   W++S S     GTP SY+V   ++  +LL 
Sbjct: 1426 FNLDFEVSGIYGYVMLDGMLPSLHALTCTFWMKS-SDDMNYGTPISYAVDNGSDNTLLL- 1483

Query: 354  AGHEPMELLIN--DKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAW 411
              +    L +N  +K+   P S+ D  WHHI I WT+ +G+W  Y DG+L   G  L+  
Sbjct: 1484 TDYNGWVLYVNGREKITNCP-SVNDGRWHHIAITWTSANGIWKVYIDGKLSDGGAGLSVG 1542

Query: 412  HPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIA-NCTAPL-L 469
             PI   G L+LGQEQD  G  F   ++FVG I+Q NLWD+ L+P QV  +A +C   L  
Sbjct: 1543 LPIPGGGALVLGQEQDKKGEGFSPAESFVGSISQLNLWDYVLSPQQVKSLATSCPEELSK 1602

Query: 470  GNVLPWEDKL 479
            GNVL W D L
Sbjct: 1603 GNVLAWPDFL 1612


>gi|240120161 G protein-coupled receptor 144 [Homo sapiens]
          Length = 963

 Score =  114 bits (284), Expect = 3e-25
 Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 7/176 (3%)

Query: 307 ARVRKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEP-----MEL 361
           AR+R  LPEL A TAC  ++   +       FS + P   N + L  A  EP       L
Sbjct: 131 ARLRSPLPELAALTACTHVQWDCASPDPAALFSVAAPALPNALQL-RAFAEPGGVVRAAL 189

Query: 362 LINDKVAQLPLSLKDNG-WHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGIL 420
           ++  + A    + + +G WHH+C  W  R G W+ + DG  +     L A HP+   GIL
Sbjct: 190 VVRGQHAPFLAAFRADGRWHHVCATWEQRGGRWALFSDGRRRAGARGLGAGHPVPSGGIL 249

Query: 421 ILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWE 476
           +LGQ+QD+LGG F    A  G++  F+LW  AL+PAQ+     C  P  G +  W+
Sbjct: 250 VLGQDQDSLGGGFSVRHALSGNLTDFHLWARALSPAQLHRARACAPPSEGLLFRWD 305


>gi|61966763 hypothetical protein LOC390667 [Homo sapiens]
          Length = 473

 Score =  104 bits (259), Expect = 2e-22
 Identities = 104/366 (28%), Positives = 156/366 (42%), Gaps = 48/366 (13%)

Query: 126 LQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMADGPWD 185
           +Q    QL+    + + R R     +R L   LG       R  +    +RD + D    
Sbjct: 92  VQGELAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQQRARERKAHKAQRDALQDS--- 148

Query: 186 SPALILELEDAVRALRDRIDRLEQELPARVNLSAAPAPVSAVPTGLHSKMDQLEGQLLAQ 245
               +  LE  V +   R+  LE  LP     +AA  P + VPT    +      +L   
Sbjct: 149 ----LARLEGLVHSQGARLAALEGRLPVAHPGTAALGP-ALVPTPTQPE------ELGPT 197

Query: 246 VLALEKERVALSHSSRRQRQEVEKELDVLQGRVAELEHGS----SAYSPPD----AFKIS 297
            L L+++R  L  +S  +    +     LQGR      GS    S  +P D    A+   
Sbjct: 198 SLKLQRDRQELRAASEHRGPPQDSSAP-LQGRREPPASGSHRVLSGTAPKDPRQQAWSPQ 256

Query: 298 IP----------IRNNYMYARVRKALP----ELYAFTACMWLRSRSSGTGQGTPFSYSVP 343
           +P          +  N     V    P     L A + C W+R+ S   G  T  SY+  
Sbjct: 257 VPGEICGVGPTLVFPNASTRNVVFLSPGFVTALRALSFCSWVRTASGRLG--TLLSYATE 314

Query: 344 GQANEIVLLEAGHEPM-----ELLINDKV-AQLPLSLK-DNGWHHICIAWTTRDGLWSAY 396
              N++VL   G + +       +I D    +LPL L  D  WHHIC+ WT+  G +  +
Sbjct: 315 DNDNKLVL--HGRDSLLPGSIHFVIGDPAFRELPLQLLLDGQWHHICVIWTSTQGRYWLH 372

Query: 397 QDGELQGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPA 456
            D  L  +G      + I P G L+LGQEQD++GG FD+++AFVG ++   +WD AL P 
Sbjct: 373 VDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAFVGSMSGLAIWDRALVPG 432

Query: 457 QVLGIA 462
           +V  +A
Sbjct: 433 EVANLA 438


>gi|167900484 pentraxin 3 [Homo sapiens]
          Length = 381

 Score = 95.9 bits (237), Expect = 8e-20
 Identities = 93/326 (28%), Positives = 149/326 (45%), Gaps = 48/326 (14%)

Query: 189 LILELEDAVRALRDRIDRLEQELPARVNLSAAP-APVSAVPTGLHSKMDQL------EGQ 241
           ++L+  D V  LR  + RL +EL       A P AP +     L S +D+L       G+
Sbjct: 72  MLLQATDDV--LRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDELLQATRDAGR 129

Query: 242 LLAQVLALEKERV-----ALSHSSRRQRQEVEKELDVLQGRVAELEHGSSAYSPPDA-FK 295
            LA++   E +R      AL+      RQ    +L  +QG  A       ++ P      
Sbjct: 130 RLARMEGAEAQRPEEAGRALAAVLEELRQ-TRADLHAVQGWAAR------SWLPAGCETA 182

Query: 296 ISIPIRNNYMYARVRKALP-ELYAFTACMWLRSR---------SSGTGQGTPFSYSVPGQ 345
           I  P+R+  ++  V    P  L +F+AC+W+++          S GT +  P+   +   
Sbjct: 183 ILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRN-PYEIQLYLS 241

Query: 346 ANEIVLLEAGHEPMELLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSG 405
              IV +  G E      N  VA+  +SL    W H+C  W + +GL S + +GEL  + 
Sbjct: 242 YQSIVFVVGGEE------NKLVAEAMVSL--GRWTHLCGTWNSEEGLTSLWVNGELAATT 293

Query: 406 ENLAAWHPIKPHGILILGQEQD--TLGGRFDATQAFVGDIAQFNLWDHALTPAQVL---G 460
             +A  H +   GIL +GQE++   +GG FD T AF G +  FN+WD  L+  ++    G
Sbjct: 294 VEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGG 353

Query: 461 IANCTAPLLGNVLPWEDKLVEAFGGA 486
             +C   + GN++ W    ++  GGA
Sbjct: 354 AESC--HIRGNIVGWGVTEIQPHGGA 377


>gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens]
          Length = 224

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 3/187 (1%)

Query: 299 PIRNNYMYARVRKALPE-LYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHE 357
           P  ++  Y  ++  L + L AFT C+   +  S T   + FSY+   Q NEI++  +   
Sbjct: 30  PKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDI 89

Query: 358 PMELLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPH 417
                +        +        HIC +W +  G+   + DG+ +   ++L   + +   
Sbjct: 90  GYSFTVGGSEILFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVR-KSLKKGYTVGAE 148

Query: 418 GILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWED 477
             +ILGQEQD+ GG F+ +Q+ VGDI   N+WD  L+P ++  I     P   NVL W  
Sbjct: 149 ASIILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTI-YLGGPFSPNVLNWRA 207

Query: 478 KLVEAFG 484
              E  G
Sbjct: 208 LKYEVQG 214


>gi|4502133 serum amyloid P component precursor [Homo sapiens]
          Length = 223

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 4/161 (2%)

Query: 316 LYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPMELLINDKVAQLPLSLK 375
           L  FT C   R+ S  +   + FSY+  G+ NE+++ +       L I        +  K
Sbjct: 49  LQNFTLCF--RAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEK 106

Query: 376 DNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQDTLGGRFDA 435
                HIC++W +  G+   + +G      + L   + ++    ++LGQEQD+ GG+FD 
Sbjct: 107 FPAPVHICVSWESSSGIAEFWINGTPLVK-KGLRQGYFVEAQPKIVLGQEQDSYGGKFDR 165

Query: 436 TQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWE 476
           +Q+FVG+I    +WD  L P  +L     T PL  N+L W+
Sbjct: 166 SQSFVGEIGDLYMWDSVLPPENILSAYQGT-PLPANILDWQ 205


>gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens]
          Length = 229

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 337 PFS--YSVPGQANEIVLLEAGHEPMELLINDKVAQL----PLSLKDNGWHHICIAWTTRD 390
           P+S  YS   Q NE++LL        L I +         P         H+ ++W +  
Sbjct: 72  PYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYASTHVNVSWESAS 131

Query: 391 GLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWD 450
           G+ + + +G+L G  + +   + +     +ILGQEQD+ GG FD  Q+FVG I    LWD
Sbjct: 132 GIATLWANGKLVGR-KGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFVGVIWDVFLWD 190

Query: 451 HALTPAQVLGIANCTAPLLGNVLPWED 477
           H L P ++       + L  + L +ED
Sbjct: 191 HVLPPKEMCDSCYSGSLLNRHTLTYED 217


>gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens]
          Length = 229

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 337 PFS--YSVPGQANEIVLLEAGHEPMELLINDKVAQL----PLSLKDNGWHHICIAWTTRD 390
           P+S  YS   Q NE++LL        L I +         P         H+ ++W +  
Sbjct: 72  PYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYASTHVNVSWESAS 131

Query: 391 GLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWD 450
           G+ + + +G+L G  + +   + +     +ILGQEQD+ GG FD  Q+FVG I    LWD
Sbjct: 132 GIATLWANGKLVGR-KGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFVGVIWDVFLWD 190

Query: 451 HALTPAQVLGIANCTAPLLGNVLPWED 477
           H L P ++       + L  + L +ED
Sbjct: 191 HVLPPKEMCDSCYSGSLLNRHTLTYED 217


>gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo
           sapiens]
          Length = 229

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 337 PFS--YSVPGQANEIVLLEAGHEPMELLINDKVAQL----PLSLKDNGWHHICIAWTTRD 390
           P+S  YS   Q NE++LL        L I +         P         H+ ++W +  
Sbjct: 72  PYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYASTHVNVSWESAS 131

Query: 391 GLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWD 450
           G+ + + +G+L G  + +   + +     +ILGQEQD+ GG FD  Q+FVG I    LWD
Sbjct: 132 GIATLWANGKLVGR-KGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFVGVIWDVFLWD 190

Query: 451 HALTPAQVLGIANCTAPLLGNVLPWED 477
           H L P ++       + L  + L +ED
Sbjct: 191 HVLPPKEMCDSCYSGSLLNRHTLTYED 217


>gi|59710093 G-protein coupled receptor 112 [Homo sapiens]
          Length = 3080

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 17/179 (9%)

Query: 306 YARVRKALPELYAFTACMWLRSRSSGTGQGTPFSY----SVPGQANEIVLLEAGHEPMEL 361
           Y  +   +PEL  FTAC+ L      +     FSY    ++ G+ +  + L   H+ + L
Sbjct: 42  YVSLIDTIPELSRFTACIDLVFMDDNSRYWMAFSYITNNALLGREDIDLGLAGDHQQLIL 101

Query: 362 LINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGE--LQGSGENLAAWHPIKPHGI 419
               K   +   L    WH IC+ W    G    + + E  L+ + +     H + PHG 
Sbjct: 102 YRLGKTFSIRHHLASFQWHTICLIWDGVKGKLELFLNKERILEVTDQP----HNLTPHGT 157

Query: 420 LILGQEQDTLGGRFDAT-QAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWED 477
           L LG           +  ++F G +  F LWDH L   + +    C   L GN++ WE+
Sbjct: 158 LFLGHFLKNESSEVKSMMRSFPGSLYYFQLWDHILENEEFM---KC---LDGNIVSWEE 210


>gi|126723390 ankyrin repeat domain 24 [Homo sapiens]
          Length = 1146

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 30/203 (14%)

Query: 105 SGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEARIRADQDTIR--------ELTG 156
           +G +        PG     +L    AE   +  ++ E RIR  ++ +R        EL  
Sbjct: 690 TGVENPGVEATVPGISAGPILHPGAAEASEKLQVELETRIRGLEEALRQREREAAAELEA 749

Query: 157 KLGRCESG---------LPRGLQGAGPRRDTMADGPWDSPALILELEDAVRALRDRIDRL 207
            LG+CE+            R  +G+G        G  D+  L   LE A   LRDR  RL
Sbjct: 750 ALGKCEAAEAEAGRLRERVREAEGSG----ASGGGGGDTTQLRAALEQAREDLRDRDSRL 805

Query: 208 EQELPARVNLSAAPAP---VSAVPTGLHSKMDQLEGQLLAQVLALE--KERVALSHSSRR 262
            +   A   L  A A          GL +++ Q E   L Q   LE  +E++A + ++  
Sbjct: 806 RELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGE 865

Query: 263 QRQEVEKEL----DVLQGRVAEL 281
           Q++    EL    D  + RVAEL
Sbjct: 866 QQRTAAAELGRARDAAEARVAEL 888



 Score = 37.4 bits (85), Expect = 0.032
 Identities = 47/189 (24%), Positives = 72/189 (38%), Gaps = 32/189 (16%)

Query: 111 DAAGAAPGE-REELLLLQSTAEQLR-QTALQQEARIRADQD--TIRELTGKLGRCESGLP 166
           +AA A   E R   LL +  A  LR + A ++EAR+   ++   +RE             
Sbjct: 809 EAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQR 868

Query: 167 RGLQGAGPRRDTMADGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLSAAPAPVSA 226
                 G  RD       + PA   E    +  LR+  + L Q               S 
Sbjct: 869 TAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQ---------------SV 913

Query: 227 VPTGLHSKMDQLEGQLLAQVLALEKERVALSHSSRRQRQEVEKE-------------LDV 273
           VP   H ++ +   +L  +  +LE+E VA    + R R E+E+E             +  
Sbjct: 914 VPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVCSVALSEHERIVGT 973

Query: 274 LQGRVAELE 282
           LQ  VA+LE
Sbjct: 974 LQANVAQLE 982



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 43/189 (22%), Positives = 66/189 (34%), Gaps = 19/189 (10%)

Query: 120  REELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTM 179
            RE+L   ++T EQ R  A +      A +  + EL         GL    + +   R ++
Sbjct: 854  REQLATARATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQSV 913

Query: 180  ADGP----WDSPALILE-----LEDAVRALRDRIDRLEQELPARVNLSAAPAPVSAVPTG 230
                        AL L      LE  V A      RL  EL      S A +    +   
Sbjct: 914  VPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVCSVALSEHERIVGT 973

Query: 231  LHSKMDQLEGQL----------LAQVLALEKERVALSHSSRRQRQEVEKELDVLQGRVAE 280
            L + + QLEGQL           A+V  +++E + +         ++      L+G   E
Sbjct: 974  LQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTE 1033

Query: 281  LEHGSSAYS 289
             E    A S
Sbjct: 1034 AERARQAQS 1042


>gi|154146199 sal-like 3 [Homo sapiens]
          Length = 1300

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 37/108 (34%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 23  IASVPLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAA-S 81
           +A++PL+A    A   G+  A+ A+   A P     LS       + G PA P APAA S
Sbjct: 261 LAALPLSAGAPAAAIAGSGPAAPAAFEGAQP-----LSRPESGASTPGGPAEPSAPAAPS 315

Query: 82  AHPLPPGPL-----FSRFLCTPLAAACPSGAQQGDAAGAAPGEREELL 124
           A P P  P       S     P +A+ P     G   GAAPG    LL
Sbjct: 316 AAPAPAAPAPAPAPQSAASSQPQSASTPPALAPGSLLGAAPGLPSPLL 363



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 29/136 (21%)

Query: 29  AASPARALPGGADNASVASGAAASPGPQRSLSA---LHGAGGSAGPPALPGAPAASAHPL 85
           A+SP+      A   + A GA     P    +       AG +  P   P APA      
Sbjct: 100 ASSPSERAESEAAEEAGAEGAEGEARPVEKEAEPMDAEPAGDTRAPRPPPAAPA------ 153

Query: 86  PPGPLFSR---------FLCTPLA---------AACPSGAQQGDAAGAAPGEREELLLLQ 127
           PP P +            L T +A         AA  SGA  G AA A P   E+L+ LQ
Sbjct: 154 PPTPAYGAPSTNVTLEALLSTKVAVAQFSQGARAAGGSGAGGGVAAAAVPLILEQLMALQ 213

Query: 128 STAEQLRQTALQQEAR 143
              +Q+ Q  L ++ R
Sbjct: 214 Q--QQIHQLQLIEQIR 227


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 38/113 (33%), Positives = 46/113 (40%), Gaps = 22/113 (19%)

Query: 5   AVLLAAGMLAFLGAVICIIASVPLAASPARALPGGADNASVASGAAASPGPQRSLSALHG 64
           A LL     A  G VI     V  AA PA A P      + A+ AAA P P  + + L  
Sbjct: 223 AALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL-- 280

Query: 65  AGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAP 117
               A PP  P  P  +A  +PP                P+ AQ G +AGAAP
Sbjct: 281 ----ARPPGHPAGPPTAAPAVPP----------------PAAAQNGGSAGAAP 313



 Score = 33.9 bits (76), Expect = 0.35
 Identities = 31/111 (27%), Positives = 34/111 (30%), Gaps = 25/111 (22%)

Query: 30  ASPARALPGGADN------ASVASGAAASPGPQRSLSAL----------------HGAGG 67
           A+PA   PG A        A    G    PGP      L                 G+ G
Sbjct: 76  AAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAG 135

Query: 68  SAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
           S  P     A AA   P P GP        P A A  +G   G   G  PG
Sbjct: 136 SCAPVPAAAAVAAGPEPAPAGPAKP---AGPAALAARAGPGPGPGPGPGPG 183



 Score = 33.1 bits (74), Expect = 0.60
 Identities = 36/104 (34%), Positives = 44/104 (42%), Gaps = 20/104 (19%)

Query: 28  LAASPARALPGGADNASVASGA-AASPGPQRSLSALHGAGGSAGPPALPG---------- 76
           ++ SPA A   GA  A+ A GA  A+P P  +  A  G GG    P  PG          
Sbjct: 63  VSGSPAGA--AGAGPAAPAEGAPGAAPEPPPAGRARPGGGG----PQRPGPPSPRRPLVP 116

Query: 77  -APAASAHPLPPGPLFSRFLCTPL--AAACPSGAQQGDAAGAAP 117
             PA  A  L P P  S   C P+  AAA  +G +   A  A P
Sbjct: 117 AGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKP 160



 Score = 33.1 bits (74), Expect = 0.60
 Identities = 30/90 (33%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 27  PLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLP 86
           P  A+PA   P  A N   A GAA +P P     A  G  G  GP A   APA       
Sbjct: 290 PPTAAPAVPPPAAAQNGGSA-GAAPAPAPAAGGPA--GVSGQPGPGAAAAAPAPGVKAES 346

Query: 87  PGPLFSRFLCTPLAAACPSGAQQGDAAGAA 116
           P           +  A P  AQ   A+G A
Sbjct: 347 P---------KRVVQAAPPAAQTLAASGPA 367



 Score = 30.4 bits (67), Expect = 3.9
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 29  AASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPA---LPGAPAASAHPL 85
           A +PA   P G         AAA+P P     +      +A P A       PA++A  +
Sbjct: 314 APAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASM 373

Query: 86  PPGPLFSRFLCTPLAAACPS-GAQQGDAAGAAPGEREEL 123
             GP     L +P A   P+ G   G   GAA    + L
Sbjct: 374 VIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSL 412



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 34  RALPGGADNASVASGAAASPGPQRSLSALHGAGGSAG-PPALPGAPAASAHPLPPGPLFS 92
           RA   GA    V SG+ A        +   GA G+A  PP    A      P  PGP   
Sbjct: 51  RAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSP 110

Query: 93  RFLCTPLAAACPSG----AQQGDAAGAAP 117
           R    P   A P+       +G A   AP
Sbjct: 111 RRPLVPAGPAPPAAKLRPPPEGSAGSCAP 139


>gi|18079216 CASK interacting protein 1 [Homo sapiens]
          Length = 1431

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 39/132 (29%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 27   PLAASPARALPGGADNASVASGAAASPG--PQRSLSALHGA----GGSAGPPALPGAPAA 80
            P A  P +A+  G  + S     A SP   P  +L+   G     G S   P  PGAPA 
Sbjct: 1278 PTAPKPVKAV-AGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPAL 1336

Query: 81   SAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREELL--LLQSTAEQLRQTAL 138
                 PP    +         A P GA  GD+A     E    L   LQ+  E++RQ   
Sbjct: 1337 HVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSARQKLEETSACLAAALQAVEEKIRQEDA 1396

Query: 139  QQEARIRADQDT 150
            Q      A++ T
Sbjct: 1397 QGPRDSAAEKST 1408


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 35/96 (36%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 32   PARALPGGADNASVASGAAASPGPQRSLSAL--HGAGGSAGPPALPGAPAASAHPLPPGP 89
            P  A P G      A GA  SPG   S  A    G  G AGPP  PGAP A     P G 
Sbjct: 1003 PGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGK 1062

Query: 90   LFSRFLCTPLAAACPSG--AQQGDAAGAAP-GEREE 122
               R    P   A P G    +G A    P G++ E
Sbjct: 1063 SGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGE 1098



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 47  SGAAASPGPQRSLSA--LHGAGGSAGPPALPGAPAASAHPLPPGP 89
           +G A  PGP  ++ A    GA GSAGPP   G P A+    PPGP
Sbjct: 844 AGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGP 888



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 23/58 (39%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 32  PARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
           P    P GA     A+GAA  PGP           G AGPP  PGA  A     P GP
Sbjct: 313 PGAPGPAGARGNDGATGAAGPPGPT----------GPAGPPGFPGAVGAKGEAGPQGP 360



 Score = 38.5 bits (88), Expect = 0.014
 Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 32  PARALPGGADNASVASGAAASPGPQ--RSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
           P    P G   A    G A  PG +  R  S L GA G AGP    G P +      PG 
Sbjct: 241 PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQ 300

Query: 90  LFSRFLCTPL---AAACPSGAQQGDAAGAAPG 118
           +  R L        A  P+GA+  D A  A G
Sbjct: 301 MGPRGLPGERGRPGAPGPAGARGNDGATGAAG 332



 Score = 36.6 bits (83), Expect = 0.055
 Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 32   PARALPGGADNASVASGAAASPGPQ-----RSLSALHGAGGSAGPPALPGAPA------- 79
            P  A   G+  A   +GA  +PGPQ     R +  L G  G  G P LPG          
Sbjct: 928  PGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGP 987

Query: 80   --ASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
              AS    PPGP+    L  P      SG +    A  +PG
Sbjct: 988  SGASGERGPPGPMGPPGLAGPPG---ESGREGAPGAEGSPG 1025



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 26/83 (31%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 39  GADNASVASGAAASPGPQRSLS--ALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLC 96
           G D     +G    PGP  +       G  G AGP    GAP     P PPG        
Sbjct: 758 GKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPG-------- 809

Query: 97  TPLAAACPSGAQQGDAAGAAPGE 119
            P   A P GA     A   PG+
Sbjct: 810 -PAGFAGPPGADGQPGAKGEPGD 831



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 27/91 (29%), Positives = 30/91 (32%), Gaps = 16/91 (17%)

Query: 37  PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHP---------LPP 87
           P G   A  A G    PGP        G  G AGPP   G P A   P          PP
Sbjct: 789 PAGPTGARGAPGDRGEPGPP-------GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP 841

Query: 88  GPLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
           GP        P+      GA+    +   PG
Sbjct: 842 GPAGPAGPPGPIGNVGAPGAKGARGSAGPPG 872



 Score = 34.7 bits (78), Expect = 0.21
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 31  SPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPL 90
           SP  A P G+   +   G A  PG  + L+   G+ G  G    PG       P PPGP 
Sbjct: 513 SPGPAGPKGSPGEAGRPGEAGLPGA-KGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPP 571

Query: 91  FSRFLCTPLAAACPSGA 107
            +R     +    P GA
Sbjct: 572 GARGQAGVMGFPGPKGA 588



 Score = 33.5 bits (75), Expect = 0.46
 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 32  PARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLF 91
           P    P G D  + A G     GP    +   G  G AG P   G P  +  P   G   
Sbjct: 604 PGAVGPAGKDGEAGAQGPPGPAGP----AGERGEQGPAGSPGFQGLPGPAGPPGEAGKPG 659

Query: 92  SRFLCTPLAAACPSGAQQGDAAGAAPGER 120
            + +   L A  PSGA+        PGER
Sbjct: 660 EQGVPGDLGAPGPSGAR---GERGFPGER 685



 Score = 33.1 bits (74), Expect = 0.60
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 39  GADNASVASGAAASPGP--QRSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
           G    + A+G A +PG   Q      +GA G AG P  PGA   S    P GP
Sbjct: 374 GPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGP 426



 Score = 32.7 bits (73), Expect = 0.79
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 48  GAAASPGPQ--RSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPS 105
           GAA  PGP+  R  +   GA GS G   + G       P P G    +    P   A P+
Sbjct: 734 GAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPT 793

Query: 106 GAQQGDAAGAAPGEREE 122
           GA+       APG+R E
Sbjct: 794 GAR------GAPGDRGE 804



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 22/113 (19%)

Query: 31  SPARA-LPG--GADNASVASGAAASPGPQRSLSALHGAG--GSAGPPALPGA-------- 77
           SP  A  PG  G   A   +G+  SPGP         AG  G  GPP  PGA        
Sbjct: 522 SPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMG 581

Query: 78  -PAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAP-------GEREE 122
            P        PG    R +  P  A  P+G + G+A    P       GER E
Sbjct: 582 FPGPKGAAGEPGKAGERGVPGPPGAVGPAG-KDGEAGAQGPPGPAGPAGERGE 633



 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 20/63 (31%)

Query: 27  PLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLP 86
           P+  S  R LPG             +PGPQ          G  GPP  PG P AS    P
Sbjct: 180 PMGPSGPRGLPG----------PPGAPGPQ----------GFQGPPGEPGEPGASGPMGP 219

Query: 87  PGP 89
            GP
Sbjct: 220 RGP 222



 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 32   PARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
            P  A   G D  +   G    PGP+       G  G AGP   PG P     P PPGP
Sbjct: 1144 PGSAGAPGKDGLNGLPGPIGPPGPR-------GRTGDAGPVGPPGPPGP---PGPPGP 1191



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 29  AASPARALPGGADNASVASGAAASPG--PQRSLSALHGAGGSAGP------PALPGAPAA 80
           A +P      GA  A+ A G A +PG    R  S   G GG  GP      P  PG+   
Sbjct: 385 AGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGD 444

Query: 81  SAHPLPPGPL 90
           +     PGP+
Sbjct: 445 TGAKGEPGPV 454



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 24/83 (28%), Positives = 28/83 (33%), Gaps = 10/83 (12%)

Query: 37  PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLC 96
           P G        GA   PGP    + L G  G  G P   G P A     P GP   R   
Sbjct: 459 PPGPAGEEGKRGARGEPGP----TGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER--- 511

Query: 97  TPLAAACPSGAQQGDAAGAAPGE 119
               +  P+G +        PGE
Sbjct: 512 ---GSPGPAGPKGSPGEAGRPGE 531



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)

Query: 64  GAGGSAGPPALPGAPAASAHPLPPGP 89
           G  G AGPP   G P     P PPGP
Sbjct: 121 GPRGPAGPPGRDGIPGQPGLPGPPGP 146



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 31/113 (27%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 10  AGMLAFLGAVICIIASVPLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAG--G 67
           AG   F GAV           +   A P G   +    G    PGP     A   AG  G
Sbjct: 340 AGPPGFPGAV----------GAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPG 389

Query: 68  SAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGER 120
           + G P   GA  A      PG   +R    P     P G +       APG +
Sbjct: 390 ADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSK 442



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 37  PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
           P G   +   +GA    GP R L    G  G+ GP    G   A+    PPGP
Sbjct: 285 PKGEPGSPGENGAPGQMGP-RGLPGERGRPGAPGPAGARGNDGATGAAGPPGP 336



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 39  GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
           GA   S   G    PGP+ + S   GA GS G     G P       PPGP
Sbjct: 413 GARGPSGPQGPGGPPGPKGN-SGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 32  PARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
           P  A P GA+ A    GA    G         GA GS G P L G P        PGP
Sbjct: 691 PGPAGPRGANGAPGNDGAKGDAGAP-------GAPGSQGAPGLQGMPGERGAAGLPGP 741



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 28/90 (31%), Positives = 29/90 (32%), Gaps = 19/90 (21%)

Query: 33  ARALPGGADNASVA--SGAAASPGPQRSLSALHGAG--GSAGPPALPGAPAASAHPLPPG 88
           A   PG A        SG A  PGP        G G  G  GP    G P     P PPG
Sbjct: 873 ATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPA---GRPGEVGPPGPPG 929

Query: 89  PLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
           P            A   G+   D    APG
Sbjct: 930 P------------AGEKGSPGADGPAGAPG 947



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 47   SGAAASPGP-----QRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPL 90
            SG    PGP     ++  S   G  G  GPP   GAP        PGP+
Sbjct: 1114 SGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPI 1162



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 27/97 (27%), Positives = 32/97 (32%), Gaps = 10/97 (10%)

Query: 28  LAASPARALPGGADNASVASGAAASPGPQRSLS--ALHGAGGSAGPPALPGAPAASAHPL 85
           L  + A  L  G D  S  +G  + PGP        L G  G+ GP    G P     P 
Sbjct: 155 LGGNFAPQLSYGYDEKS--TGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPG 212

Query: 86  PPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREE 122
             GP+       P     P G    D     PG   E
Sbjct: 213 ASGPM------GPRGPPGPPGKNGDDGEAGKPGRPGE 243



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 37   PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLC 96
            P G      A G A   GP+       G  G  G   + G    S    PPGP  S    
Sbjct: 1074 PAGPVGPVGARGPAGPQGPRGD----KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQ 1129

Query: 97   TPLAAACPSGAQQGDAAGAAPGE 119
             P  A+ P+G +    +  APG+
Sbjct: 1130 GPSGASGPAGPRGPPGSAGAPGK 1152


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 34/97 (35%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 37  PGGADNASVASGAAASPGPQ-----RSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLF 91
           P G       SG A  PGPQ     R      GA G  G   LPG P ++ +P PPGP  
Sbjct: 838 PPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSG 897

Query: 92  SRFLCTPLAAACPSGA--------QQGDAAGAAPGER 120
           S     P   A  +GA         +GDA    PGE+
Sbjct: 898 SPGKDGPPGPAGNTGAPGSPGVSGPKGDA--GQPGEK 932



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 28/81 (34%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 37   PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLC 96
            P G D  S   G    PGP+ +     G  GS G P  PG P     P  PGP      C
Sbjct: 1147 PPGKDGTSGHPGPIGPPGPRGN----RGERGSEGSPGHPGQPGPPGPPGAPGP-----CC 1197

Query: 97   TPLAAACPSGAQQGDAAGAAP 117
              + AA  +G     A G AP
Sbjct: 1198 GGVGAAAIAGIGGEKAGGFAP 1218



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 30/90 (33%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 31  SPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPL 90
           +P  A P GA       G    PG  R +    G  GS G P  PG+   S  P PPGP 
Sbjct: 511 APGPAGPRGAAGEPGRDGVPGGPG-MRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPS 569

Query: 91  FSRFLCTPLAAACPSGAQQGDAAGAAPGER 120
             R     +    P G    D A    GER
Sbjct: 570 GPRGQPGVMGFPGPKG---NDGAPGKNGER 596



 Score = 37.4 bits (85), Expect = 0.032
 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 47  SGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPSG 106
           +GA  +PG +       GA G  GPP L GAP       PPGP   +    P     P G
Sbjct: 665 AGAPGAPGGKGDA----GAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPG---PPG 717

Query: 107 AQQGDAAGAAPGER 120
           A         PGER
Sbjct: 718 AAGTPGLQGMPGER 731



 Score = 37.0 bits (84), Expect = 0.042
 Identities = 50/164 (30%), Positives = 58/164 (35%), Gaps = 28/164 (17%)

Query: 34   RALPGGADNASVASGAAASPG----PQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
            + LPG A  A    G   +PG    P R  S   G  G  G    PGAP A  HP PPGP
Sbjct: 998  QGLPGLAGTAG-EPGRDGNPGSDGLPGRDGSP--GGKGDRGENGSPGAPGAPGHPGPPGP 1054

Query: 90   LFSRFLC---TPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEARIRA 146
            +              A P+GA     +  APG        Q       +T  +  A I+ 
Sbjct: 1055 VGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP-------QGPRGDKGETGERGAAGIKG 1107

Query: 147  DQDTIRELTGKLGRCESGLPRGLQG-------AGPRRDTMADGP 183
                 R   G  G   S  P G QG       AGPR      GP
Sbjct: 1108 H----RGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP 1147



 Score = 36.6 bits (83), Expect = 0.055
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 37  PGGADNASVASGAAASPGPQR-----------SLSALHGAGGSAGPPALPGAPAASAHPL 85
           P G+  ++ A G    PGPQ             ++   G  G  GP  +PGAP       
Sbjct: 355 PAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARG 414

Query: 86  PPGP 89
           PPGP
Sbjct: 415 PPGP 418



 Score = 35.8 bits (81), Expect = 0.093
 Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 33  ARALPG--------GADNASVASGAAASPGPQRSLSA-----LHGAGGSAGPPALPGAPA 79
           AR LPG        G    S + G    PGP  +  A     + G  G AG P   G+P 
Sbjct: 877 ARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPG 936

Query: 80  ASAHPLPPGPL 90
           A   P  PGPL
Sbjct: 937 AQGPPGAPGPL 947



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 8/48 (16%)

Query: 41  DNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           D+  V SG A        +  L G  G AGPP  PG P  S HP  PG
Sbjct: 156 DSYDVKSGVA--------VGGLAGYPGPAGPPGPPGPPGTSGHPGSPG 195



 Score = 34.7 bits (78), Expect = 0.21
 Identities = 28/93 (30%), Positives = 32/93 (34%), Gaps = 19/93 (20%)

Query: 28  LAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPP 87
           LA  P  A P G       SG   SPG          + G  GPP  PG    S  P PP
Sbjct: 169 LAGYPGPAGPPGPPGPPGTSGHPGSPG----------SPGYQGPPGEPGQAGPSGPPGPP 218

Query: 88  GPLFSRFLCTPLAAACPSGAQQGDAAGAAPGER 120
           G          +  + P+G          PGER
Sbjct: 219 G---------AIGPSGPAGKDGESGRPGRPGER 242



 Score = 34.7 bits (78), Expect = 0.21
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 48   GAAASPGPQRSLSALHGAG-----GSAGPPALPGAPAASAHPLPPGP 89
            GA  SPGP     A+   G     G  GP   PG    S HP P GP
Sbjct: 1116 GAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGP 1162



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 17/72 (23%)

Query: 37  PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLC 96
           P    N     G    PGP        G  G  G P +PG P +   P PPG        
Sbjct: 95  PTRPPNGQGPQGPKGDPGPP-------GIPGRNGDPGIPGQPGSPGSPGPPG-------- 139

Query: 97  TPLAAACPSGAQ 108
             +  +CP+G Q
Sbjct: 140 --ICESCPTGPQ 149



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 29  AASPARALPGGADNASVASGAAASPGPQ--RSLSALHGAGGSAGPPALPGAPAASAHPLP 86
           A +P    P G   A    G A  PGP+  +  +   G  G+AG P L G P        
Sbjct: 677 AGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGS 736

Query: 87  PGP 89
           PGP
Sbjct: 737 PGP 739



 Score = 33.9 bits (76), Expect = 0.35
 Identities = 30/102 (29%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 28  LAASPARALPGGADNASVASGAAASPGPQ--------RSLSALHGAGGSAGPPA---LPG 76
           LA +P      G        GAA  PGP         + +    G  GS GP      PG
Sbjct: 688 LAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPG 747

Query: 77  APAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
            P A   P   GP   R    P+    P+G       G APG
Sbjct: 748 GPGADGVPGKDGP---RGPTGPIGPPGPAGQPGDKGEGGAPG 786



 Score = 32.7 bits (73), Expect = 0.79
 Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 16/88 (18%)

Query: 27  PLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLP 86
           P  A+ A  L GGA      +GA   PGP+       G  G AG P +PGA         
Sbjct: 418 PAGANGAPGLRGGAGEPG-KNGAKGEPGPR-------GERGEAGIPGVPGAKGEDGKDGS 469

Query: 87  PGPLFSRFLCTPLAAACPSGAQQGDAAG 114
           PG         P A   P  A +  A G
Sbjct: 470 PG--------EPGANGLPGAAGERGAPG 489



 Score = 32.3 bits (72), Expect = 1.0
 Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 13/84 (15%)

Query: 48  GAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAH---------PLPPGPLFSRFLCTP 98
           G   +PGP        GA G  G P LPGA  A  +         P PPGP  +      
Sbjct: 291 GENGAPGPMGP----RGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGS 346

Query: 99  LAAACPSGAQQGDAAGAAPGEREE 122
             A    G      +  APG+R E
Sbjct: 347 PGAKGEVGPAGSPGSNGAPGQRGE 370



 Score = 32.3 bits (72), Expect = 1.0
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 39  GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHP 84
           G   +  A G   +PGP   ++ + GA G AGPP +PG P  S  P
Sbjct: 930 GEKGSPGAQGPPGAPGPL-GIAGITGARGLAGPPGMPG-PRGSPGP 973



 Score = 32.3 bits (72), Expect = 1.0
 Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 37   PGGADNASVASGAAASPGPQ-----RSLSALHGAGGSAGP---PALPGAPAASAHPLPPG 88
            P G   A   +G+  +PGPQ     +  +   GA G  G    P  PGAP +       G
Sbjct: 1069 PAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQG 1128

Query: 89   PLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
             + S     P     PSG    D     PG
Sbjct: 1129 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPG 1158



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 37  PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
           P G      A G    PG +    A  G  G  GPP + G P  S    PPGP
Sbjct: 805 PPGPAGFPGAPGQNGEPGGKGERGA-PGEKGEGGPPGVAGPPGGSGPAGPPGP 856



 Score = 31.2 bits (69), Expect = 2.3
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 32  PARALPGGADNASVASGAAASPGPQRSLS--ALHGAGGSAGPPALPGAPAASAHPLPPGP 89
           P  A   G D A  + G    PGP  +       GA G  GP   PG+  A      PGP
Sbjct: 314 PGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGP 373



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 39  GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTP 98
           G   A    G   SPG +   + L GA G  G P   G    +  P   GP   R    P
Sbjct: 456 GVPGAKGEDGKDGSPG-EPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGP 514

Query: 99  LAAACPSGAQQGDAAGAAPGER 120
                 +G    D     PG R
Sbjct: 515 AGPRGAAGEPGRDGVPGGPGMR 536



 Score = 30.4 bits (67), Expect = 3.9
 Identities = 27/84 (32%), Positives = 28/84 (33%), Gaps = 19/84 (22%)

Query: 37  PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLC 96
           P G        G    PGPQ     L G  G+ GPP   G       P  PG        
Sbjct: 619 PPGPTGPGGDKGDTGPPGPQ----GLQGLPGTGGPPGENGK------PGEPG-------- 660

Query: 97  TPLAAACPSGAQQGDAAGAAPGER 120
            P   A   GA  G     APGER
Sbjct: 661 -PKGDAGAPGAPGGKGDAGAPGER 683



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 29  AASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHP 84
           A  P     GGA      +G   SPG +       G  G  GP   PGAP  +  P
Sbjct: 773 AGQPGDKGEGGAPGLPGIAGPRGSPGER-------GETGPPGPAGFPGAPGQNGEP 821



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 16/90 (17%)

Query: 39  GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPG------APAASAHPLPPGPLFS 92
           G D     +G    PGP    +   G  G  G P LPG      +P       PPGP   
Sbjct: 756 GKDGPRGPTGPIGPPGP----AGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGF 811

Query: 93  RFLCTPLAAACPSGAQQGDAAGAAPGEREE 122
                   A   +G   G     APGE+ E
Sbjct: 812 P------GAPGQNGEPGGKGERGAPGEKGE 835



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 14/85 (16%)

Query: 37  PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLC 96
           P G   A    GA   PGP    +  +GA G  G    PG   A   P P G        
Sbjct: 400 PAGIPGAPGLMGARGPPGP----AGANGAPGLRGGAGEPGKNGAKGEPGPRGERGE---- 451

Query: 97  TPLAAACPS--GAQQGDAAGAAPGE 119
               A  P   GA+  D    +PGE
Sbjct: 452 ----AGIPGVPGAKGEDGKDGSPGE 472



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 28   LAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHP 84
            LA  P    P G+       G +  PG     + L G  G  GP  LPG    +  P
Sbjct: 958  LAGPPGMPGPRGSPGPQGVKGESGKPGA----NGLSGERGPPGPQGLPGLAGTAGEP 1010


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 39/140 (27%), Positives = 49/140 (35%), Gaps = 31/140 (22%)

Query: 24   ASVPLAASPARALPG-----GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAP 78
            AS P   S  R  PG     G D A+   G    PGP+       G  G  GP   PG P
Sbjct: 1153 ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR-------GRSGETGPAGPPGNP 1205

Query: 79   AASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTAL 138
                 P PPGP                G      AG  P E+    L    A+Q      
Sbjct: 1206 GPPGPPGPPGP----------------GIDMSAFAGLGPREKGPDPLQYMRADQAAGGLR 1249

Query: 139  QQEARIRADQDTIRELTGKL 158
            Q +A + A   T++ L  ++
Sbjct: 1250 QHDAEVDA---TLKSLNNQI 1266



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 19/108 (17%)

Query: 34  RALPG--GADNASVASGAAASPGPQ-----RSLSALHGAGGSAGPPALPGAPAASAHPLP 86
           R LPG  G D    ASG A  PG Q     + +    GA G AGP    G          
Sbjct: 719 RGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGA 778

Query: 87  PGPLFSRFLCTPLAAACPSGA--QQGD--------AAGA--APGEREE 122
           PG    R L  P+    P+GA  ++G+        +AGA  APGER E
Sbjct: 779 PGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGE 826



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 37  PGGADNASVASGAAASPGPQRS-----LSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
           P GA       G   SPGP  +        + GA GSAG P + GAP       PPGP
Sbjct: 385 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP 442



 Score = 37.4 bits (85), Expect = 0.032
 Identities = 31/86 (36%), Positives = 34/86 (39%), Gaps = 17/86 (19%)

Query: 47   SGAAASPGPQ-----RSLSALHGAGGSAGPPALP---------GAPAASAHPLPPGPLFS 92
            SGA   PGPQ     R +  L G  G  G P LP         GAP AS    PPGP+  
Sbjct: 965  SGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP 1024

Query: 93   RFLCTPLAAACPSGAQQGDAAGAAPG 118
              L  P   A   G +    A   PG
Sbjct: 1025 PGLTGP---AGEPGREGSPGADGPPG 1047



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 29  AASPARALPGGADNASVASGAAASPG-----PQRSLSALHGAGGSAGPPALPGAPAASAH 83
           A  P +A   G      A G   +PG       R    L GA G AG P + G   +   
Sbjct: 257 AGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGE 316

Query: 84  PLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
              PGP+  R L        P+GA         PG
Sbjct: 317 NGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 351



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 39  GADNASVASGAAASPGPQ--RSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           G   A    G + +PGPQ    ++   GA G+ GPP   G P A+    PPG
Sbjct: 858 GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPG 909



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 30/90 (33%), Positives = 32/90 (35%), Gaps = 21/90 (23%)

Query: 34  RALPG-----GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           R LPG     G   A+ A G    PGP    +   G  G AG P  PGAP A     P G
Sbjct: 326 RGLPGERGRTGPAGAAGARGNDGQPGP----AGPPGPVGPAGGPGFPGAPGAKGEAGPTG 381

Query: 89  PLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
                       A  P GAQ        PG
Sbjct: 382 ------------ARGPEGAQGPRGEPGTPG 399



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 29   AASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
            A  P R    GAD      GAA   G +    A+ GA G+ GPP  PG    +      G
Sbjct: 1031 AGEPGREGSPGADGPPGRDGAAGVKGDRGETGAV-GAPGAPGPPGSPGPAGPTGKQGDRG 1089

Query: 89   PLFSRFLCTPLAAACPSGAQ--------QGDAAGAA-PGER 120
               ++    P+  + P+GA+        +GD   A  PGER
Sbjct: 1090 EAGAQ---GPMGPSGPAGARGIQGPQGPRGDKGEAGEPGER 1127



 Score = 33.1 bits (74), Expect = 0.60
 Identities = 42/159 (26%), Positives = 52/159 (32%), Gaps = 32/159 (20%)

Query: 31  SPARALPGGADNASVASGAAASPGPQ-----RSLSALHGAGGSAGPPALPGAPAASAHPL 85
           +P    P G      A+G    PG       R L+   G  G  G     GAP     P 
Sbjct: 529 APGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG 588

Query: 86  PPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEARIR 145
           PPGP  +R     +    P G      A   PG+  E  L  +                 
Sbjct: 589 PPGPQGARGQPGVMGFPGPKG------ANGEPGKAGEKGLPGAPG--------------- 627

Query: 146 ADQDTIRELTGKLGRCESGLPRGLQG-AGPRRDTMADGP 183
                +R L GK G   +  P G  G AG R +  A GP
Sbjct: 628 -----LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP 661



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 36  LPG--GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSR 93
           +PG  G+  A   +GA   PGP R      GA G  GP    G P  +      GP    
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGP-RGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEP 473

Query: 94  FLCTPLAAACPSGAQQGDAAGAAPG 118
               P  A  P+G +    A   PG
Sbjct: 474 GPAGPQGAPGPAGEEGKRGARGEPG 498



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 19/92 (20%)

Query: 39  GADNASVASGAAASPGPQRSLSALHGAGGSAGPPA------LPGAPAASAHPLPPGPLFS 92
           G D     +G    PGP    +  +G  G  GPP         GAP       PPGP  +
Sbjct: 780 GKDGGRGLTGPIGPPGP----AGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGP--A 833

Query: 93  RFLCTPLAAACP-------SGAQQGDAAGAAP 117
            F   P A   P          Q+GDA    P
Sbjct: 834 GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 865



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 29  AASPARALPGGADNASVASGAAASPGPQ--RSLSALHGAGGSAGPPALPGAPAASAHP 84
           A  P    P G      A GA    GP   R      G  G  G P  PG   AS +P
Sbjct: 353 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNP 410



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 37  PGGADNASVASGAAASPGPQ--RSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRF 94
           P GA+     +G    PG    R L    G  G+AGPP   G          PGP  S F
Sbjct: 607 PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP--SGF 664

Query: 95  LCTPLAAACP-SGAQQGDAAGAAPGE 119
              P     P  G + GD     PGE
Sbjct: 665 QGLPGPPGPPGEGGKPGDQ--GVPGE 688



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 18/89 (20%)

Query: 34  RALPG--GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLF 91
           + +PG  GA       G    PG + S     GA G  GP  LPG P         GP  
Sbjct: 683 QGVPGEAGAPGLVGPRGERGFPGERGS----PGAQGLQGPRGLPGTPGTDGPKGASGP-- 736

Query: 92  SRFLCTPLAAACPSGAQQGDAAGAAPGER 120
                     A P GAQ        PGER
Sbjct: 737 ----------AGPPGAQGPPGLQGMPGER 755



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 30/98 (30%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 33  ARALPGGADNASV--ASGAAASPGPQ--RSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           A   PG A       ++G    PGP          GA G +GPP   G P       PPG
Sbjct: 895 ATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPG 954

Query: 89  PLFSRFLCTPLAAACPSGAQ----QGDAAGAAPGEREE 122
                    P  A  P G Q    Q    G  PG+R E
Sbjct: 955 EKGEPGDDGPSGAEGPPGPQGLAGQRGIVG-LPGQRGE 991



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 27  PLAASPARALPG--GADNASVASGAAASPGP--QRSLSALHGAGGSAGPPALPGAPAASA 82
           P  ++ AR  PG  G       +G A  PG   Q       G  G  G    PG    S 
Sbjct: 811 PAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSG 870

Query: 83  HPLPPGP 89
            P P GP
Sbjct: 871 APGPQGP 877



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 48  GAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           G   +PGP+       G  G  G P  PG P     P PPG
Sbjct: 141 GEKGAPGPR-------GRDGEPGTPGNPGPPGPPGPPGPPG 174



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 5   AVLLAAGMLAFLGAVICIIASVPLAASPARALPG--GADNASVASGAAASPGPQRSLSAL 62
           A  +A G     G     +   P+     R  PG  GA       G    PG +  +S  
Sbjct: 180 AAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG-EPGVSGP 238

Query: 63  HGAGGSAGPPALPG------APAASAHPLPPGPLFSR 93
            G  G  GPP  PG       P  +    PPGP  +R
Sbjct: 239 MGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR 275


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
            sapiens]
          Length = 1418

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 39/140 (27%), Positives = 49/140 (35%), Gaps = 31/140 (22%)

Query: 24   ASVPLAASPARALPG-----GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAP 78
            AS P   S  R  PG     G D A+   G    PGP+       G  G  GP   PG P
Sbjct: 1084 ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR-------GRSGETGPAGPPGNP 1136

Query: 79   AASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTAL 138
                 P PPGP                G      AG  P E+    L    A+Q      
Sbjct: 1137 GPPGPPGPPGP----------------GIDMSAFAGLGPREKGPDPLQYMRADQAAGGLR 1180

Query: 139  QQEARIRADQDTIRELTGKL 158
            Q +A + A   T++ L  ++
Sbjct: 1181 QHDAEVDA---TLKSLNNQI 1197



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 19/108 (17%)

Query: 34  RALPG--GADNASVASGAAASPGPQ-----RSLSALHGAGGSAGPPALPGAPAASAHPLP 86
           R LPG  G D    ASG A  PG Q     + +    GA G AGP    G          
Sbjct: 650 RGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGA 709

Query: 87  PGPLFSRFLCTPLAAACPSGA--QQGD--------AAGA--APGEREE 122
           PG    R L  P+    P+GA  ++G+        +AGA  APGER E
Sbjct: 710 PGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGE 757



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 37  PGGADNASVASGAAASPGPQRS-----LSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
           P GA       G   SPGP  +        + GA GSAG P + GAP       PPGP
Sbjct: 316 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP 373



 Score = 37.4 bits (85), Expect = 0.032
 Identities = 31/86 (36%), Positives = 34/86 (39%), Gaps = 17/86 (19%)

Query: 47  SGAAASPGPQ-----RSLSALHGAGGSAGPPALP---------GAPAASAHPLPPGPLFS 92
           SGA   PGPQ     R +  L G  G  G P LP         GAP AS    PPGP+  
Sbjct: 896 SGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP 955

Query: 93  RFLCTPLAAACPSGAQQGDAAGAAPG 118
             L  P   A   G +    A   PG
Sbjct: 956 PGLTGP---AGEPGREGSPGADGPPG 978



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 29  AASPARALPGGADNASVASGAAASPG-----PQRSLSALHGAGGSAGPPALPGAPAASAH 83
           A  P +A   G      A G   +PG       R    L GA G AG P + G   +   
Sbjct: 188 AGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGE 247

Query: 84  PLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
              PGP+  R L        P+GA         PG
Sbjct: 248 NGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 282



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 39  GADNASVASGAAASPGPQ--RSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           G   A    G + +PGPQ    ++   GA G+ GPP   G P A+    PPG
Sbjct: 789 GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPG 840



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 30/90 (33%), Positives = 32/90 (35%), Gaps = 21/90 (23%)

Query: 34  RALPG-----GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           R LPG     G   A+ A G    PGP    +   G  G AG P  PGAP A     P G
Sbjct: 257 RGLPGERGRTGPAGAAGARGNDGQPGP----AGPPGPVGPAGGPGFPGAPGAKGEAGPTG 312

Query: 89  PLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
                       A  P GAQ        PG
Sbjct: 313 ------------ARGPEGAQGPRGEPGTPG 330



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 29   AASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
            A  P R    GAD      GAA   G +    A+ GA G+ GPP  PG    +      G
Sbjct: 962  AGEPGREGSPGADGPPGRDGAAGVKGDRGETGAV-GAPGAPGPPGSPGPAGPTGKQGDRG 1020

Query: 89   PLFSRFLCTPLAAACPSGAQ--------QGDAAGAA-PGER 120
               ++    P+  + P+GA+        +GD   A  PGER
Sbjct: 1021 EAGAQ---GPMGPSGPAGARGIQGPQGPRGDKGEAGEPGER 1058



 Score = 33.1 bits (74), Expect = 0.60
 Identities = 42/159 (26%), Positives = 52/159 (32%), Gaps = 32/159 (20%)

Query: 31  SPARALPGGADNASVASGAAASPGPQ-----RSLSALHGAGGSAGPPALPGAPAASAHPL 85
           +P    P G      A+G    PG       R L+   G  G  G     GAP     P 
Sbjct: 460 APGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG 519

Query: 86  PPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEARIR 145
           PPGP  +R     +    P G      A   PG+  E  L  +                 
Sbjct: 520 PPGPQGARGQPGVMGFPGPKG------ANGEPGKAGEKGLPGAPG--------------- 558

Query: 146 ADQDTIRELTGKLGRCESGLPRGLQG-AGPRRDTMADGP 183
                +R L GK G   +  P G  G AG R +  A GP
Sbjct: 559 -----LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP 592



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 36  LPG--GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSR 93
           +PG  G+  A   +GA   PGP R      GA G  GP    G P  +      GP    
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGP-RGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEP 404

Query: 94  FLCTPLAAACPSGAQQGDAAGAAPG 118
               P  A  P+G +    A   PG
Sbjct: 405 GPAGPQGAPGPAGEEGKRGARGEPG 429



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 19/92 (20%)

Query: 39  GADNASVASGAAASPGPQRSLSALHGAGGSAGPPA------LPGAPAASAHPLPPGPLFS 92
           G D     +G    PGP    +  +G  G  GPP         GAP       PPGP  +
Sbjct: 711 GKDGGRGLTGPIGPPGP----AGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGP--A 764

Query: 93  RFLCTPLAAACP-------SGAQQGDAAGAAP 117
            F   P A   P          Q+GDA    P
Sbjct: 765 GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 796



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 29  AASPARALPGGADNASVASGAAASPGPQ--RSLSALHGAGGSAGPPALPGAPAASAHP 84
           A  P    P G      A GA    GP   R      G  G  G P  PG   AS +P
Sbjct: 284 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNP 341



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 37  PGGADNASVASGAAASPGPQ--RSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRF 94
           P GA+     +G    PG    R L    G  G+AGPP   G          PGP  S F
Sbjct: 538 PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP--SGF 595

Query: 95  LCTPLAAACP-SGAQQGDAAGAAPGE 119
              P     P  G + GD     PGE
Sbjct: 596 QGLPGPPGPPGEGGKPGDQ--GVPGE 619



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 18/89 (20%)

Query: 34  RALPG--GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLF 91
           + +PG  GA       G    PG + S     GA G  GP  LPG P         GP  
Sbjct: 614 QGVPGEAGAPGLVGPRGERGFPGERGS----PGAQGLQGPRGLPGTPGTDGPKGASGP-- 667

Query: 92  SRFLCTPLAAACPSGAQQGDAAGAAPGER 120
                     A P GAQ        PGER
Sbjct: 668 ----------AGPPGAQGPPGLQGMPGER 686



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 30/98 (30%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 33  ARALPGGADNASV--ASGAAASPGPQ--RSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           A   PG A       ++G    PGP          GA G +GPP   G P       PPG
Sbjct: 826 ATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPG 885

Query: 89  PLFSRFLCTPLAAACPSGAQ----QGDAAGAAPGEREE 122
                    P  A  P G Q    Q    G  PG+R E
Sbjct: 886 EKGEPGDDGPSGAEGPPGPQGLAGQRGIVG-LPGQRGE 922



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 27  PLAASPARALPG--GADNASVASGAAASPGP--QRSLSALHGAGGSAGPPALPGAPAASA 82
           P  ++ AR  PG  G       +G A  PG   Q       G  G  G    PG    S 
Sbjct: 742 PAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSG 801

Query: 83  HPLPPGP 89
            P P GP
Sbjct: 802 APGPQGP 808



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 48  GAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           G   +PGP+       G  G  G P  PG P     P PPG
Sbjct: 72  GEKGAPGPR-------GRDGEPGTPGNPGPPGPPGPPGPPG 105



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 5   AVLLAAGMLAFLGAVICIIASVPLAASPARALPG--GADNASVASGAAASPGPQRSLSAL 62
           A  +A G     G     +   P+     R  PG  GA       G    PG +  +S  
Sbjct: 111 AAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG-EPGVSGP 169

Query: 63  HGAGGSAGPPALPG------APAASAHPLPPGPLFSR 93
            G  G  GPP  PG       P  +    PPGP  +R
Sbjct: 170 MGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR 206


>gi|191252785 centrobin, centrosomal BRCA2 interacting protein
           isoform alpha [Homo sapiens]
          Length = 903

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 27/200 (13%)

Query: 108 QQGDAAGAAP-GEREELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLP 166
           ++ DAA A    E  EL  L++  E+ RQT  QQE +++     ++E        ++ L 
Sbjct: 332 EERDAARAGQLSEHRELETLRAALEEERQTWAQQEHQLKEHYQALQE------ESQAQLE 385

Query: 167 RGLQGAGPRRDTMADGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLSAAPAPVSA 226
           R  +    +    A   W++   +  ++  VR L   +D       AR    A    +S 
Sbjct: 386 REKE----KSQREAQAAWETQHQLALVQSEVRRLEGELD------TARRERDALQLEMSL 435

Query: 227 VPTGLHSKMDQLEGQLLAQVLALEKERVA-LSHSSRRQ----RQEVEKELDVLQGRVAEL 281
           V     S+  QLE +L  Q+     ER+A    SS RQ    R+   K+L  L G     
Sbjct: 436 VQARYESQRIQLESELAVQLEQRVTERLAQAQESSLRQAASLREHHRKQLQDLSG----- 490

Query: 282 EHGSSAYSPPDAFKISIPIR 301
           +H     S    FK+ +  R
Sbjct: 491 QHQQELASQLAQFKVEMAER 510


>gi|80861396 centrobin, centrosomal BRCA2 interacting protein
           isoform beta [Homo sapiens]
          Length = 925

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 27/200 (13%)

Query: 108 QQGDAAGAAP-GEREELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLP 166
           ++ DAA A    E  EL  L++  E+ RQT  QQE +++     ++E        ++ L 
Sbjct: 332 EERDAARAGQLSEHRELETLRAALEEERQTWAQQEHQLKEHYQALQE------ESQAQLE 385

Query: 167 RGLQGAGPRRDTMADGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLSAAPAPVSA 226
           R  +    +    A   W++   +  ++  VR L   +D       AR    A    +S 
Sbjct: 386 REKE----KSQREAQAAWETQHQLALVQSEVRRLEGELD------TARRERDALQLEMSL 435

Query: 227 VPTGLHSKMDQLEGQLLAQVLALEKERVA-LSHSSRRQ----RQEVEKELDVLQGRVAEL 281
           V     S+  QLE +L  Q+     ER+A    SS RQ    R+   K+L  L G     
Sbjct: 436 VQARYESQRIQLESELAVQLEQRVTERLAQAQESSLRQAASLREHHRKQLQDLSG----- 490

Query: 282 EHGSSAYSPPDAFKISIPIR 301
           +H     S    FK+ +  R
Sbjct: 491 QHQQELASQLAQFKVEMAER 510


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 33/79 (41%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 48  GAAASPGPQRSLSALHGAGGSAGPP---ALPGAPAASAHPLPP--GPLFSRFLCTPLAAA 102
           GAAASP P   L+A H A  S GP    A  GAP A   P PP  GP  +  LCT     
Sbjct: 652 GAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPL-PWPPATGPGSADGLCTIYETE 710

Query: 103 CPSGAQQGDAA---GAAPG 118
            P  A     A   G +PG
Sbjct: 711 GPESATPAPGALDPGPSPG 729



 Score = 32.3 bits (72), Expect = 1.0
 Identities = 55/212 (25%), Positives = 79/212 (37%), Gaps = 18/212 (8%)

Query: 24  ASVPLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAH 83
           A+  +   P     GG   A++   A  + GP RS         S  P +  G  A  A 
Sbjct: 49  AAGAVGRKPLAERAGGIGGATIPESAPRA-GPTRSAGTSSRNPASRPPASGRGERAPPAK 107

Query: 84  PLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEAR 143
              PGP+ S    +      P G Q+G    A     EE +      E  +++AL   AR
Sbjct: 108 NTSPGPVSSPGRASGTTRPGPLG-QKGLRISA-----EETVARGKATEAPKRSALSAGAR 161

Query: 144 IRADQDTIRELTGKLGR------CESGLPRGLQGAGPRRDTMADGPWDSPALILE---LE 194
                 T    +  + R       E GLPR    A PR  T  +GP  S +   E    E
Sbjct: 162 RDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPT--EGPRKSVSSASEHSTTE 219

Query: 195 DAVRALRDRIDRLEQELPARVNLSAAPAPVSA 226
            +  A R        + PA  +LS++  P+S+
Sbjct: 220 PSPAARRRPSAGGGLQRPASRSLSSSATPLSS 251


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 1124

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 33/79 (41%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 48  GAAASPGPQRSLSALHGAGGSAGPP---ALPGAPAASAHPLPP--GPLFSRFLCTPLAAA 102
           GAAASP P   L+A H A  S GP    A  GAP A   P PP  GP  +  LCT     
Sbjct: 921 GAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPL-PWPPATGPGSADGLCTIYETE 979

Query: 103 CPSGAQQGDAA---GAAPG 118
            P  A     A   G +PG
Sbjct: 980 GPESATPAPGALDPGPSPG 998



 Score = 32.3 bits (72), Expect = 1.0
 Identities = 55/212 (25%), Positives = 79/212 (37%), Gaps = 18/212 (8%)

Query: 24  ASVPLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAH 83
           A+  +   P     GG   A++   A  + GP RS         S  P +  G  A  A 
Sbjct: 49  AAGAVGRKPLAERAGGIGGATIPESAPRA-GPTRSAGTSSRNPASRPPASGRGERAPPAK 107

Query: 84  PLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEAR 143
              PGP+ S    +      P G Q+G    A     EE +      E  +++AL   AR
Sbjct: 108 NTSPGPVSSPGRASGTTRPGPLG-QKGLRISA-----EETVARGKATEAPKRSALSAGAR 161

Query: 144 IRADQDTIRELTGKLGR------CESGLPRGLQGAGPRRDTMADGPWDSPALILE---LE 194
                 T    +  + R       E GLPR    A PR  T  +GP  S +   E    E
Sbjct: 162 RDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPT--EGPRKSVSSASEHSTTE 219

Query: 195 DAVRALRDRIDRLEQELPARVNLSAAPAPVSA 226
            +  A R        + PA  +LS++  P+S+
Sbjct: 220 PSPAARRRPSAGGGLQRPASRSLSSSATPLSS 251


>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
           sapiens]
          Length = 816

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 33/79 (41%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 48  GAAASPGPQRSLSALHGAGGSAGPP---ALPGAPAASAHPLPP--GPLFSRFLCTPLAAA 102
           GAAASP P   L+A H A  S GP    A  GAP A   P PP  GP  +  LCT     
Sbjct: 613 GAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPL-PWPPATGPGSADGLCTIYETE 671

Query: 103 CPSGAQQGDAA---GAAPG 118
            P  A     A   G +PG
Sbjct: 672 GPESATPAPGALDPGPSPG 690


>gi|122937321 UNC homeobox [Homo sapiens]
          Length = 531

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 36/106 (33%), Positives = 45/106 (42%), Gaps = 27/106 (25%)

Query: 37  PGGADNAS--------VASGAAASPGPQ-----RSLSALHGAGG------SAGPPALPGA 77
           PGGA +++        VAS  A +P P       S +A  G GG      +AGP   P A
Sbjct: 431 PGGAPDSAFARRSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDCADAGTAGPAPPPPA 490

Query: 78  PAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREEL 123
           P+    P PP P        P     P   + G AAG +P E EEL
Sbjct: 491 PSPRPGPRPPSPAEE-----PATCGVP---EPGAAAGPSPPEGEEL 528



 Score = 33.9 bits (76), Expect = 0.35
 Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 32  PARALPGGAD------NASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPL 85
           P  AL GGA       +A  A     +P  Q S  A  G GG+        +P A A P 
Sbjct: 392 PQAALKGGAGLEPAPKDAPPAPAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAVASPG 451

Query: 86  PPGPLFSRFLCTPLAAACPSGAQQGDAAGA 115
            P P  + F     AAA   G   GD A A
Sbjct: 452 APAPAPAPFRDLASAAATEGGG--GDCADA 479



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 24  ASVPLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAH 83
           A+V      A  LP  A   SV S  + SP P+R  ++   A  +AG    PG P A   
Sbjct: 314 AAVAAVERGAAGLPK-ASPFSVESLLSDSP-PRRKAASNAAAAAAAGLDFAPGLPCAPRT 371

Query: 84  PLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGERE 121
            +  G      +  PL    P  A +G  AG  P  ++
Sbjct: 372 LIGKGHFLLYPITQPLGFLVPQAALKG-GAGLEPAPKD 408


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 48/165 (29%), Positives = 59/165 (35%), Gaps = 27/165 (16%)

Query: 37   PGGADNASVASGAAASPGPQRSLSA-----LHGAGGSAGPPALPGAPAASAH-------- 83
            P G   A+ A G   + GPQ    A       G  G  GP  L G P  S          
Sbjct: 1029 PVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVG 1088

Query: 84   PL-PPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEA 142
            P+ PPGP   R    P  A  P G   G      PGE+ E         +     +Q E 
Sbjct: 1089 PMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE-------PGESGSPGIQGEP 1141

Query: 143  RIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMADGPWDSP 187
             ++      R   G+ G  ESG P      GP+  T  DGP  +P
Sbjct: 1142 GVKGP----RGERGEKG--ESGQPGEPGPPGPKGPTGDDGPKGNP 1180



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 47/162 (29%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 24   ASVPLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAH 83
            AS P+       LPG A     A GA    GP+       G  G  GPP  PG P     
Sbjct: 1365 ASGPIGPGGPPGLPGPAGPKG-AKGATGPGGPK-------GEKGVQGPPGHPGPPGEVIQ 1416

Query: 84   PLP-PGPLFSRFLCTPLAAACPSGAQQGDAA---GAAPGEREELLLLQSTAEQLRQTALQ 139
            PLP   P  +R       +   S   Q D A   G APG    L  +  + + LR+  ++
Sbjct: 1417 PLPIQMPKKTR------RSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLRE-EIE 1469

Query: 140  QEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMAD 181
            Q  R    QD+       L  C   LP G     P +    D
Sbjct: 1470 QMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARD 1511



 Score = 36.6 bits (83), Expect = 0.055
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 48   GAAASPGPQ-----RSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAA 102
            G    PGP      R      G  G  G P  PG+P  +    PPGPL  R    P  + 
Sbjct: 1184 GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR---GPAGSP 1240

Query: 103  CPSGAQQGDAAGAAPG 118
               G Q G  A   PG
Sbjct: 1241 GSEGRQGGKGAKGDPG 1256



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 48  GAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           G    PGPQ ++   HG  G  G P LPG P +   P  PG
Sbjct: 569 GTQGLPGPQGAIGP-HGEKGPQGKPGLPGMPGSDGPPGHPG 608



 Score = 33.1 bits (74), Expect = 0.60
 Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 37  PGGADNASVASGAAASPGP-----QRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           P GA   S A G +   GP     +R L    G  G  GP   PG P     P  PG
Sbjct: 765 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPG 821



 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 34  RALPGGADNASVAS--GAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           R LPG A    +    G +  PGP  S     GA GS GP   PG P       PPG
Sbjct: 904 RGLPGTAGGPGLKGNEGPSGPPGPAGSPGE-RGAAGSGGPIGPPGRPGPQG---PPG 956



 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 47   SGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
            +G A  PGP      L G  GS G    PGA   +  P P GP
Sbjct: 1270 AGPAGKPGPD----GLRGLPGSVGQQGRPGATGQAGPPGPVGP 1308



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 37  PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAAS---------AHPLPP 87
           P G        G    PG QR      G  G  GPP + G   A+          HP PP
Sbjct: 804 PKGPPGPPGKDGLPGHPG-QRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPP 862

Query: 88  GP 89
           GP
Sbjct: 863 GP 864



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 27/94 (28%), Positives = 30/94 (31%), Gaps = 18/94 (19%)

Query: 33  ARALPG--------GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHP 84
           A+ LPG        G D      G     GP+       G  G  GPP +PG P      
Sbjct: 492 AQGLPGPPGEDGERGDDGEIGPRGLPGESGPR-------GLLGPKGPPGIPGPPGVRGMD 544

Query: 85  LPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
            P GP  S     P     P G Q        PG
Sbjct: 545 GPQGPKGS---LGPQGEPGPPGQQGTPGTQGLPG 575


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 48/165 (29%), Positives = 59/165 (35%), Gaps = 27/165 (16%)

Query: 37   PGGADNASVASGAAASPGPQRSLSA-----LHGAGGSAGPPALPGAPAASAH-------- 83
            P G   A+ A G   + GPQ    A       G  G  GP  L G P  S          
Sbjct: 1008 PVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVG 1067

Query: 84   PL-PPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEA 142
            P+ PPGP   R    P  A  P G   G      PGE+ E         +     +Q E 
Sbjct: 1068 PMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE-------PGESGSPGIQGEP 1120

Query: 143  RIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMADGPWDSP 187
             ++      R   G+ G  ESG P      GP+  T  DGP  +P
Sbjct: 1121 GVKGP----RGERGEKG--ESGQPGEPGPPGPKGPTGDDGPKGNP 1159



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 47/162 (29%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 24   ASVPLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAH 83
            AS P+       LPG A     A GA    GP+       G  G  GPP  PG P     
Sbjct: 1344 ASGPIGPGGPPGLPGPAGPKG-AKGATGPGGPK-------GEKGVQGPPGHPGPPGEVIQ 1395

Query: 84   PLP-PGPLFSRFLCTPLAAACPSGAQQGDAA---GAAPGEREELLLLQSTAEQLRQTALQ 139
            PLP   P  +R       +   S   Q D A   G APG    L  +  + + LR+  ++
Sbjct: 1396 PLPIQMPKKTR------RSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLRE-EIE 1448

Query: 140  QEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMAD 181
            Q  R    QD+       L  C   LP G     P +    D
Sbjct: 1449 QMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARD 1490



 Score = 36.6 bits (83), Expect = 0.055
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 48   GAAASPGPQ-----RSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAA 102
            G    PGP      R      G  G  G P  PG+P  +    PPGPL  R    P  + 
Sbjct: 1163 GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR---GPAGSP 1219

Query: 103  CPSGAQQGDAAGAAPG 118
               G Q G  A   PG
Sbjct: 1220 GSEGRQGGKGAKGDPG 1235



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 48  GAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           G    PGPQ ++   HG  G  G P LPG P +   P  PG
Sbjct: 548 GTQGLPGPQGAIGP-HGEKGPQGKPGLPGMPGSDGPPGHPG 587



 Score = 33.1 bits (74), Expect = 0.60
 Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 37  PGGADNASVASGAAASPGP-----QRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           P GA   S A G +   GP     +R L    G  G  GP   PG P     P  PG
Sbjct: 744 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPG 800



 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 34  RALPGGADNASVAS--GAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           R LPG A    +    G +  PGP  S     GA GS GP   PG P       PPG
Sbjct: 883 RGLPGTAGGPGLKGNEGPSGPPGPAGSPGE-RGAAGSGGPIGPPGRPGPQG---PPG 935



 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 47   SGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
            +G A  PGP      L G  GS G    PGA   +  P P GP
Sbjct: 1249 AGPAGKPGPD----GLRGLPGSVGQQGRPGATGQAGPPGPVGP 1287



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 37  PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAAS---------AHPLPP 87
           P G        G    PG QR      G  G  GPP + G   A+          HP PP
Sbjct: 783 PKGPPGPPGKDGLPGHPG-QRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPP 841

Query: 88  GP 89
           GP
Sbjct: 842 GP 843



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 27/94 (28%), Positives = 30/94 (31%), Gaps = 18/94 (19%)

Query: 33  ARALPG--------GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHP 84
           A+ LPG        G D      G     GP+       G  G  GPP +PG P      
Sbjct: 471 AQGLPGPPGEDGERGDDGEIGPRGLPGESGPR-------GLLGPKGPPGIPGPPGVRGMD 523

Query: 85  LPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
            P GP  S     P     P G Q        PG
Sbjct: 524 GPQGPKGS---LGPQGEPGPPGQQGTPGTQGLPG 554


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 48/165 (29%), Positives = 59/165 (35%), Gaps = 27/165 (16%)

Query: 37   PGGADNASVASGAAASPGPQRSLSA-----LHGAGGSAGPPALPGAPAASAH-------- 83
            P G   A+ A G   + GPQ    A       G  G  GP  L G P  S          
Sbjct: 1115 PVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVG 1174

Query: 84   PL-PPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEA 142
            P+ PPGP   R    P  A  P G   G      PGE+ E         +     +Q E 
Sbjct: 1175 PMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE-------PGESGSPGIQGEP 1227

Query: 143  RIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMADGPWDSP 187
             ++      R   G+ G  ESG P      GP+  T  DGP  +P
Sbjct: 1228 GVKGP----RGERGEKG--ESGQPGEPGPPGPKGPTGDDGPKGNP 1266



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 47/162 (29%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 24   ASVPLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAH 83
            AS P+       LPG A     A GA    GP+       G  G  GPP  PG P     
Sbjct: 1451 ASGPIGPGGPPGLPGPAGPKG-AKGATGPGGPK-------GEKGVQGPPGHPGPPGEVIQ 1502

Query: 84   PLP-PGPLFSRFLCTPLAAACPSGAQQGDAA---GAAPGEREELLLLQSTAEQLRQTALQ 139
            PLP   P  +R       +   S   Q D A   G APG    L  +  + + LR+  ++
Sbjct: 1503 PLPIQMPKKTR------RSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLRE-EIE 1555

Query: 140  QEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMAD 181
            Q  R    QD+       L  C   LP G     P +    D
Sbjct: 1556 QMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARD 1597



 Score = 36.6 bits (83), Expect = 0.055
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 48   GAAASPGPQ-----RSLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAA 102
            G    PGP      R      G  G  G P  PG+P  +    PPGPL  R    P  + 
Sbjct: 1270 GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR---GPAGSP 1326

Query: 103  CPSGAQQGDAAGAAPG 118
               G Q G  A   PG
Sbjct: 1327 GSEGRQGGKGAKGDPG 1342



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 48  GAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           G    PGPQ ++   HG  G  G P LPG P +   P  PG
Sbjct: 655 GTQGLPGPQGAIGP-HGEKGPQGKPGLPGMPGSDGPPGHPG 694



 Score = 33.1 bits (74), Expect = 0.60
 Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 37  PGGADNASVASGAAASPGP-----QRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
           P GA   S A G +   GP     +R L    G  G  GP   PG P     P  PG
Sbjct: 851 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPG 907



 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 34   RALPGGADNASVAS--GAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPG 88
            R LPG A    +    G +  PGP  S     GA GS GP   PG P       PPG
Sbjct: 990  RGLPGTAGGPGLKGNEGPSGPPGPAGSPGE-RGAAGSGGPIGPPGRPGPQG---PPG 1042



 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 47   SGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPGP 89
            +G A  PGP      L G  GS G    PGA   +  P P GP
Sbjct: 1356 AGPAGKPGPD----GLRGLPGSVGQQGRPGATGQAGPPGPVGP 1394



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 37  PGGADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAAS---------AHPLPP 87
           P G        G    PG QR      G  G  GPP + G   A+          HP PP
Sbjct: 890 PKGPPGPPGKDGLPGHPG-QRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPP 948

Query: 88  GP 89
           GP
Sbjct: 949 GP 950



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 27/94 (28%), Positives = 30/94 (31%), Gaps = 18/94 (19%)

Query: 33  ARALPG--------GADNASVASGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHP 84
           A+ LPG        G D      G     GP+       G  G  GPP +PG P      
Sbjct: 578 AQGLPGPPGEDGERGDDGEIGPRGLPGESGPR-------GLLGPKGPPGIPGPPGVRGMD 630

Query: 85  LPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPG 118
            P GP  S     P     P G Q        PG
Sbjct: 631 GPQGPKGS---LGPQGEPGPPGQQGTPGTQGLPG 661


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,334,545
Number of Sequences: 37866
Number of extensions: 1175608
Number of successful extensions: 14428
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 620
Number of HSP's that attempted gapping in prelim test: 8728
Number of HSP's gapped (non-prelim): 4843
length of query: 500
length of database: 18,247,518
effective HSP length: 106
effective length of query: 394
effective length of database: 14,233,722
effective search space: 5608086468
effective search space used: 5608086468
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.

Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.