Guide to the Human Genome
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Name: CRP Sequence: fasta or formatted (224aa) NCBI GI: 55770842
Description:

C-reactive protein, pentraxin-related

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         10           1
 C cysteine            1.3          3           1
 D aspartate           4.0          9           1
 E glutamate           6.7         15           1
 F phenylalanine       7.1         16           1
 G glycine             8.0         18           2
 H histidine           1.3          3           1
 I isoleucine          5.4         12           2
 K lysine              6.2         14           2
 L leucine             8.9         20           2
 M methionine          1.3          3           1
 N asparagine          3.1          7           1
 P proline             4.9         11           1
 Q glutamine           3.1          7           1
 R arginine            2.7          6           1
 S serine             10.3         23           2
 T threonine           6.2         14           1
 V valine              8.5         19           1
 W tryptophan          2.7          6           1
 Y tyrosine            3.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C-reactive protein, pentraxin-related 
APCS                  0.479   serum amyloid P component precursor 
LOC649458             0.274   PREDICTED: similar to hCG2036669 
LOC649458             0.274   PREDICTED: similar to hCG2036669 
LOC649458             0.274   PREDICTED: hypothetical protein LOC649458 
NPTX1                 0.134   neuronal pentraxin I precursor 
C16orf38              0.124   hypothetical protein LOC390667 
NPTXR                 0.122   neuronal pentraxin receptor 
NPTX2                 0.120   neuronal pentraxin II 
SVEP1                 0.113   polydom 
PTX3                  0.101   pentraxin 3 
GPR144                0.088   G protein-coupled receptor 144 
GPR126                0.044   G protein-coupled receptor 126 alpha 1 precursor [Ho...
GPR126                0.044   G protein-coupled receptor 126 beta 1 precursor [Hom...
GPR126                0.044   G protein-coupled receptor 126 alpha 2 precursor [Ho...
GPR126                0.044   G protein-coupled receptor 126 beta 2 precursor [Hom...
ZNF341                0.007   zinc finger protein 341 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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