Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CNTROB Sequence: fasta or formatted (903aa) NCBI GI: 191252785
Description:

centrobin, centrosomal BRCA2 interacting protein isoform alpha

Referenced in:

Centrosome

Other entries for this name:
alt prot [925aa] centrobin, centrosomal BRCA2 interacting protein isoform beta
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         80           2
 C cysteine            0.6          5           2
 D aspartate           3.9         35           1
 E glutamate          11.6        105           3
 F phenylalanine       1.6         14           1
 G glycine             4.9         44           2
 H histidine           2.5         23           2
 I isoleucine          0.9          8           1
 K lysine              3.2         29           3
 L leucine            12.8        116           3
 M methionine          1.4         13           1
 N asparagine          1.7         15           2
 P proline             8.1         73           3
 Q glutamine           9.5         86           3
 R arginine            9.0         81           2
 S serine              9.2         83           4
 T threonine           4.3         39           2
 V valine              4.1         37           2
 W tryptophan          0.9          8           1
 Y tyrosine            1.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   centrobin, centrosomal BRCA2 interacting protein is... 
CNTROB                0.993   centrobin, centrosomal BRCA2 interacting protein iso...
TCHH                  0.047   trichohyalin 
PLEC1                 0.045   plectin 1 isoform 11 
PLEC1                 0.045   plectin 1 isoform 10 
PLEC1                 0.045   plectin 1 isoform 8 
PLEC1                 0.045   plectin 1 isoform 7 
PLEC1                 0.045   plectin 1 isoform 6 
PLEC1                 0.045   plectin 1 isoform 3 
PLEC1                 0.045   plectin 1 isoform 2 
PLEC1                 0.045   plectin 1 isoform 1 
MYH14                 0.037   myosin, heavy chain 14 isoform 1 
MYH14                 0.037   myosin, heavy chain 14 isoform 2 
MYH14                 0.037   myosin, heavy chain 14 isoform 3 
AZI1                  0.036   5-azacytidine induced 1 isoform a 
CGN                   0.035   cingulin 
LOC100132816          0.035   PREDICTED: similar to Putative golgin subfamily A m...
CROCC                 0.035   ciliary rootlet coiled-coil 
FBF1                  0.035   Fas (TNFRSF6) binding factor 1 
CEP250                0.035   centrosomal protein 2 
LOC400352             0.034   PREDICTED: similar to Putative golgin subfamily A m...
NUMA1                 0.034   nuclear mitotic apparatus protein 1 
MYH11                 0.034   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.034   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.034   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.034   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
LOC283685             0.033   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283767             0.033   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.033   PREDICTED: golgi autoantigen, golgin subfamily a-li...
GOLGA4                0.033   golgi autoantigen, golgin subfamily a, 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press