Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC649458 Sequence: fasta or formatted (229aa) NCBI GI: 169162308
Description:

PREDICTED: similar to hCG2036669

Referenced in:

Additional Host Defense Functions

Other entries for this name:
alt mRNA [229aa] PREDICTED: similar to hCG2036669
alt mRNA [229aa] PREDICTED: hypothetical protein LOC649458
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         10           2
 C cysteine            3.5          8           1
 D aspartate           4.4         10           1
 E glutamate           5.2         12           2
 F phenylalanine       4.4         10           1
 G glycine             7.9         18           2
 H histidine           3.5          8           2
 I isoleucine          2.6          6           2
 K lysine              7.4         17           2
 L leucine            10.0         23           4
 M methionine          1.7          4           1
 N asparagine          4.8         11           1
 P proline             6.1         14           2
 Q glutamine           2.2          5           1
 R arginine            2.6          6           1
 S serine              7.9         18           2
 T threonine           7.0         16           2
 V valine              7.4         17           2
 W tryptophan          2.6          6           1
 Y tyrosine            4.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2036669 
LOC649458             1.000   PREDICTED: similar to hCG2036669 
LOC649458             1.000   PREDICTED: hypothetical protein LOC649458 
APCS                  0.297   serum amyloid P component precursor 
CRP                   0.256   C-reactive protein, pentraxin-related 
SVEP1                 0.084   polydom 
NPTXR                 0.082   neuronal pentraxin receptor 
C16orf38              0.071   hypothetical protein LOC390667 
NPTX2                 0.062   neuronal pentraxin II 
GPR144                0.058   G protein-coupled receptor 144 
NPTX1                 0.056   neuronal pentraxin I precursor 
PTX3                  0.054   pentraxin 3 
LOC100291782          0.009   PREDICTED: hypothetical protein XP_002346152 
LOC100289951          0.009   PREDICTED: hypothetical protein XP_002347042 
LOC100287492          0.009   PREDICTED: hypothetical protein XP_002342893 
GPR112                0.009   G-protein coupled receptor 112 
KIAA1024              0.006   hypothetical protein LOC23251 
FAM178A               0.006   hypothetical protein LOC55719 isoform 1 
FAM178A               0.006   hypothetical protein LOC55719 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press