Guide to the Human Genome
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Name: HDAC9 Sequence: fasta or formatted (879aa) NCBI GI: 17158041
Description:

histone deacetylase 9 isoform 2

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [1011aa] histone deacetylase 9 isoform 1
alt prot [1066aa] histone deacetylase 9 isoform 4
alt prot [1069aa] histone deacetylase 9 isoform 5
alt prot [590aa] histone deacetylase 9 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         54           2
 C cysteine            1.0          9           1
 D aspartate           3.9         34           2
 E glutamate           7.1         62           3
 F phenylalanine       2.2         19           2
 G glycine             6.0         53           2
 H histidine           4.3         38           2
 I isoleucine          3.8         33           1
 K lysine              5.6         49           2
 L leucine            11.3         99           3
 M methionine          2.0         18           3
 N asparagine          3.1         27           2
 P proline             7.2         63           2
 Q glutamine           9.2         81           5
 R arginine            5.2         46           2
 S serine             10.1         89           4
 T threonine           4.6         40           2
 V valine              5.5         48           2
 W tryptophan          0.3          3           1
 Y tyrosine            1.6         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   histone deacetylase 9 isoform 2 
HDAC9                 0.977   histone deacetylase 9 isoform 1 
HDAC9                 0.977   histone deacetylase 9 isoform 4 
HDAC9                 0.973   histone deacetylase 9 isoform 5 
HDAC9                 0.639   histone deacetylase 9 isoform 3 
HDAC5                 0.504   histone deacetylase 5 isoform 3 
HDAC5                 0.504   histone deacetylase 5 isoform 1 
HDAC4                 0.493   histone deacetylase 4 
HDAC7                 0.240   histone deacetylase 7 isoform a 
HDAC7                 0.228   histone deacetylase 7 isoform d 
HDAC6                 0.075   histone deacetylase 6 
HDAC10                0.067   histone deacetylase 10 isoform 2 
HDAC10                0.067   histone deacetylase 10 isoform 1 
HDAC1                 0.030   histone deacetylase 1 
HDAC2                 0.029   histone deacetylase 2 
HDAC8                 0.028   histone deacetylase 8 
HDAC3                 0.024   histone deacetylase 3 
ZNF853                0.020   zinc finger protein 853 
MINK1                 0.018   misshapen/NIK-related kinase isoform 2 
MINK1                 0.018   misshapen/NIK-related kinase isoform 3 
MINK1                 0.018   misshapen/NIK-related kinase isoform 1 
MED15                 0.018   mediator complex subunit 15 isoform b 
FOXP2                 0.017   forkhead box P2 isoform I 
TCHH                  0.017   trichohyalin 
MINK1                 0.017   misshapen/NIK-related kinase isoform 4 
MLL2                  0.016   myeloid/lymphoid or mixed-lineage leukemia 2 
TPR                   0.016   nuclear pore complex-associated protein TPR 
MAP4K4                0.016   mitogen-activated protein kinase kinase kinase kinas...
FOXP2                 0.016   forkhead box P2 isoform II 
HDAC11                0.015   histone deacetylase 11 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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