| Name: HDAC1 | Sequence: fasta or formatted (482aa) | NCBI GI: 13128860 | |
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Description: histone deacetylase 1
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Referenced in: Histones, Related Proteins, and Modifying Enzymes
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 5.4 26 1 C cysteine 2.1 10 1 D aspartate 6.8 33 2 E glutamate 10.0 48 3 F phenylalanine 4.1 20 1 G glycine 7.7 37 4 H histidine 2.9 14 2 I isoleucine 4.8 23 1 K lysine 8.3 40 2 L leucine 6.4 31 3 M methionine 3.3 16 1 N asparagine 4.6 22 1 P proline 4.4 21 1 Q glutamine 3.1 15 2 R arginine 4.6 22 2 S serine 5.6 27 2 T threonine 4.1 20 2 V valine 5.6 27 2 W tryptophan 0.4 2 1 Y tyrosine 5.8 28 3 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 histone deacetylase 1 HDAC2 0.869 histone deacetylase 2 HDAC3 0.542 histone deacetylase 3 HDAC8 0.305 histone deacetylase 8 HDAC9 0.087 histone deacetylase 9 isoform 5 HDAC9 0.087 histone deacetylase 9 isoform 4 HDAC9 0.086 histone deacetylase 9 isoform 1 HDAC7 0.085 histone deacetylase 7 isoform d HDAC7 0.085 histone deacetylase 7 isoform a HDAC5 0.082 histone deacetylase 5 isoform 3 HDAC5 0.082 histone deacetylase 5 isoform 1 HDAC4 0.081 histone deacetylase 4 HDAC6 0.079 histone deacetylase 6 HDAC10 0.073 histone deacetylase 10 isoform 1 HDAC10 0.055 histone deacetylase 10 isoform 2 HDAC9 0.053 histone deacetylase 9 isoform 2 HDAC11 0.051 histone deacetylase 11 isoform 1 HDAC11 0.051 histone deacetylase 11 isoform 2 CYLC1 0.026 cylicin, basic protein of sperm head cytoskeleton 1... AP3D1 0.024 adaptor-related protein complex 3, delta 1 subunit ... RGAG4 0.022 retrotransposon gag domain containing 4 LOC100294088 0.022 PREDICTED: hypothetical protein, partial CLSPN 0.021 claspin AP3D1 0.020 adaptor-related protein complex 3, delta 1 subunit ... WDR87 0.020 NYD-SP11 protein PSIP1 0.020 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... PSIP1 0.020 PC4 and SFRS1 interacting protein 1 isoform 2 MAP1B 0.020 microtubule-associated protein 1B MYT1 0.018 myelin transcription factor 1 PELP1 0.018 proline, glutamic acid and leucine rich protein 1 [...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
