HDAC5 34236

Name: HDAC5	Sequence: fasta or formatted (1123aa)		NCBI GI: 62750349
Description: histone deacetylase 5 isoform 3		Referenced in: Stomach, Small Intestine, and Colon Histones, Related Proteins, and Modifying Enzymes
Other entries for this name: alt prot [1122aa] histone deacetylase 5 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.6 85 4 C cysteine 1.2 14 1 D aspartate 3.1 35 2 E glutamate 8.5 95 4 F phenylalanine 2.2 25 2 G glycine 8.2 92 6 H histidine 3.5 39 2 I isoleucine 2.8 31 2 K lysine 4.6 52 2 L leucine 11.4 128 3 M methionine 2.0 22 1 N asparagine 2.3 26 1 P proline 7.4 83 2 Q glutamine 8.6 97 4 R arginine 4.5 51 2 S serine 8.7 98 3 T threonine 5.5 62 2 V valine 6.0 67 2 W tryptophan 0.5 6 1 Y tyrosine 1.3 15 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 histone deacetylase 5 isoform 3 HDAC5 0.997 histone deacetylase 5 isoform 1 HDAC4 0.534 histone deacetylase 4 HDAC9 0.520 histone deacetylase 9 isoform 5 HDAC9 0.516 histone deacetylase 9 isoform 4 HDAC9 0.497 histone deacetylase 9 isoform 1 HDAC9 0.393 histone deacetylase 9 isoform 2 HDAC7 0.315 histone deacetylase 7 isoform a HDAC7 0.304 histone deacetylase 7 isoform d HDAC9 0.214 histone deacetylase 9 isoform 3 HDAC6 0.118 histone deacetylase 6 HDAC10 0.095 histone deacetylase 10 isoform 1 HDAC10 0.081 histone deacetylase 10 isoform 2 HDAC2 0.037 histone deacetylase 2 HDAC1 0.036 histone deacetylase 1 HDAC8 0.032 histone deacetylase 8 HDAC3 0.029 histone deacetylase 3 MAP4K4 0.021 mitogen-activated protein kinase kinase kinase kinas... HDAC11 0.020 histone deacetylase 11 isoform 2 TNIK 0.019 TRAF2 and NCK interacting kinase isoform 1 ZNF853 0.019 zinc finger protein 853 MAP4K4 0.018 mitogen-activated protein kinase kinase kinase kinas... FOXP2 0.018 forkhead box P2 isoform I FOXP2 0.018 forkhead box P2 isoform III FOXP2 0.018 forkhead box P2 isoform II MED15 0.018 mediator complex subunit 15 isoform b HDAC11 0.018 histone deacetylase 11 isoform 1 ENAH 0.017 enabled homolog isoform a ENAH 0.017 enabled homolog isoform b MAML2 0.017 mastermind-like 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.