Guide to the Human Genome
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Name: HDAC10 Sequence: fasta or formatted (649aa) NCBI GI: 226529806
Description:

histone deacetylase 10 isoform 2

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [669aa] histone deacetylase 10 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         84           4
 C cysteine            2.2         14           1
 D aspartate           4.0         26           2
 E glutamate           5.7         37           3
 F phenylalanine       2.5         16           1
 G glycine             8.6         56           2
 H histidine           4.0         26           2
 I isoleucine          1.8         12           1
 K lysine              1.2          8           1
 L leucine            15.1         98           3
 M methionine          2.0         13           1
 N asparagine          1.7         11           2
 P proline             7.6         49           3
 Q glutamine           5.7         37           3
 R arginine            5.4         35           2
 S serine              5.9         38           2
 T threonine           3.7         24           2
 V valine              6.9         45           2
 W tryptophan          1.4          9           1
 Y tyrosine            1.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   histone deacetylase 10 isoform 2 
HDAC10                0.991   histone deacetylase 10 isoform 1 
HDAC6                 0.267   histone deacetylase 6 
HDAC4                 0.142   histone deacetylase 4 
HDAC5                 0.140   histone deacetylase 5 isoform 3 
HDAC5                 0.140   histone deacetylase 5 isoform 1 
HDAC9                 0.138   histone deacetylase 9 isoform 5 
HDAC9                 0.138   histone deacetylase 9 isoform 4 
HDAC7                 0.134   histone deacetylase 7 isoform d 
HDAC7                 0.134   histone deacetylase 7 isoform a 
HDAC9                 0.130   histone deacetylase 9 isoform 1 
HDAC9                 0.090   histone deacetylase 9 isoform 2 
HDAC1                 0.042   histone deacetylase 1 
HDAC2                 0.041   histone deacetylase 2 
HDAC8                 0.035   histone deacetylase 8 
HDAC3                 0.032   histone deacetylase 3 
HDAC11                0.022   histone deacetylase 11 isoform 1 
MUC7                  0.017   mucin 7, secreted precursor 
MUC7                  0.017   mucin 7, secreted precursor 
MUC7                  0.017   mucin 7, secreted precursor 
HDAC11                0.016   histone deacetylase 11 isoform 2 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
AATK                  0.012   apoptosis-associated tyrosine kinase 
LOC100131102          0.012   PREDICTED: hypothetical protein 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.011   PREDICTED: hypothetical protein LOC80164 
GLTSCR1               0.011   glioma tumor suppressor candidate region gene 1 [Ho...
PCLO                  0.011   piccolo isoform 2 
PCLO                  0.011   piccolo isoform 1 
MUC2                  0.009   mucin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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