Guide to the Human Genome
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Name: HDAC5 Sequence: fasta or formatted (1122aa) NCBI GI: 62750347
Description:

histone deacetylase 5 isoform 1

Referenced in:

Stomach, Small Intestine, and Colon
Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [1123aa] histone deacetylase 5 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         84           4
 C cysteine            1.2         14           1
 D aspartate           3.1         35           2
 E glutamate           8.5         95           4
 F phenylalanine       2.2         25           2
 G glycine             8.2         92           6
 H histidine           3.5         39           2
 I isoleucine          2.8         31           2
 K lysine              4.6         52           2
 L leucine            11.4        128           3
 M methionine          2.0         22           1
 N asparagine          2.3         26           1
 P proline             7.4         83           2
 Q glutamine           8.6         97           4
 R arginine            4.5         51           2
 S serine              8.7         98           3
 T threonine           5.5         62           2
 V valine              6.0         67           2
 W tryptophan          0.5          6           1
 Y tyrosine            1.3         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   histone deacetylase 5 isoform 1 
HDAC5                 0.998   histone deacetylase 5 isoform 3 
HDAC4                 0.536   histone deacetylase 4 
HDAC9                 0.520   histone deacetylase 9 isoform 5 
HDAC9                 0.517   histone deacetylase 9 isoform 4 
HDAC9                 0.498   histone deacetylase 9 isoform 1 
HDAC9                 0.394   histone deacetylase 9 isoform 2 
HDAC7                 0.315   histone deacetylase 7 isoform a 
HDAC7                 0.304   histone deacetylase 7 isoform d 
HDAC9                 0.214   histone deacetylase 9 isoform 3 
HDAC6                 0.118   histone deacetylase 6 
HDAC10                0.095   histone deacetylase 10 isoform 1 
HDAC10                0.081   histone deacetylase 10 isoform 2 
HDAC2                 0.037   histone deacetylase 2 
HDAC1                 0.036   histone deacetylase 1 
HDAC8                 0.032   histone deacetylase 8 
HDAC3                 0.029   histone deacetylase 3 
MAP4K4                0.021   mitogen-activated protein kinase kinase kinase kinas...
HDAC11                0.020   histone deacetylase 11 isoform 2 
TNIK                  0.019   TRAF2 and NCK interacting kinase isoform 1 
ZNF853                0.019   zinc finger protein 853 
FOXP2                 0.019   forkhead box P2 isoform II 
MAP4K4                0.018   mitogen-activated protein kinase kinase kinase kinas...
FOXP2                 0.018   forkhead box P2 isoform I 
FOXP2                 0.018   forkhead box P2 isoform III 
MED15                 0.018   mediator complex subunit 15 isoform b 
HDAC11                0.018   histone deacetylase 11 isoform 1 
ENAH                  0.017   enabled homolog isoform a 
ENAH                  0.017   enabled homolog isoform b 
MAML2                 0.017   mastermind-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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