Guide to the Human Genome
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Name: LOC728671 Sequence: fasta or formatted (284aa) NCBI GI: 169214872
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {284aa} PREDICTED: hypothetical protein
alt prot {284aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         31           2
 C cysteine            4.9         14           2
 D aspartate           2.5          7           1
 E glutamate           6.0         17           3
 F phenylalanine       1.4          4           1
 G glycine             9.5         27           2
 H histidine           2.8          8           2
 I isoleucine          2.1          6           1
 K lysine              1.8          5           1
 L leucine            10.6         30           2
 M methionine          1.1          3           1
 N asparagine          1.1          3           1
 P proline            10.2         29           3
 Q glutamine           4.9         14           1
 R arginine            7.4         21           1
 S serine              8.8         25           2
 T threonine           4.6         13           1
 V valine              4.6         13           2
 W tryptophan          3.5         10           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728671             0.995   PREDICTED: hypothetical protein 
LOC728671             0.990   PREDICTED: hypothetical protein 
NOTCH3                0.021   Notch homolog 3 
MNT                   0.017   MAX binding protein 
IER5L                 0.017   immediate early response 5-like 
LOC100131696          0.015   PREDICTED: keratin associated protein 
LOC100131696          0.015   PREDICTED: keratin associated protein 
LOC100288060          0.015   PREDICTED: hypothetical protein XP_002343557 
CAMK2B                0.015   calcium/calmodulin-dependent protein kinase II beta ...
LOC100129890          0.015   PREDICTED: hypothetical protein 
EPHA6                 0.015   EPH receptor A6 isoform a 
C6orf132              0.014   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.014   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.014   PREDICTED: hypothetical protein LOC647024 
KNDC1                 0.014   kinase non-catalytic C-lobe domain (KIND) containin...
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
NEUROD2               0.014   neurogenic differentiation 2 
SAMD1                 0.014   sterile alpha motif domain containing 1 
LOC100129890          0.012   PREDICTED: hypothetical protein 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
ZNF828                0.012   zinc finger protein 828 
SSPO                  0.012   SCO-spondin 
KRTAP10-10            0.012   keratin associated protein 10-10 
OTUD1                 0.012   OTU domain containing 1 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
RANBP9                0.012   RAN binding protein 9 
LOC100131244          0.012   PREDICTED: similar to kinase D-interacting substrat...
LOC100293014          0.012   PREDICTED: hypothetical protein 
LOC100131244          0.012   PREDICTED: similar to kinase D-interacting substrat...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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