Guide to the Human Genome
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Name: LOC728671 Sequence: fasta or formatted (284aa) NCBI GI: 113429040
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {284aa} PREDICTED: hypothetical protein
alt prot {284aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         31           2
 C cysteine            4.9         14           2
 D aspartate           2.5          7           1
 E glutamate           5.6         16           3
 F phenylalanine       1.4          4           1
 G glycine             9.5         27           2
 H histidine           2.8          8           2
 I isoleucine          2.1          6           1
 K lysine              1.8          5           1
 L leucine            10.6         30           2
 M methionine          1.1          3           1
 N asparagine          1.1          3           1
 P proline            10.2         29           3
 Q glutamine           4.9         14           1
 R arginine            7.4         21           1
 S serine              8.8         25           2
 T threonine           4.6         13           1
 V valine              4.9         14           2
 W tryptophan          3.5         10           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728671             0.997   PREDICTED: hypothetical protein 
LOC728671             0.995   PREDICTED: hypothetical protein 
NOTCH3                0.017   Notch homolog 3 
MNT                   0.017   MAX binding protein 
IER5L                 0.017   immediate early response 5-like 
CAMK2B                0.016   calcium/calmodulin-dependent protein kinase II beta ...
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
LOC100131696          0.014   PREDICTED: keratin associated protein 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
LOC100131696          0.014   PREDICTED: keratin associated protein 
LOC100129890          0.014   PREDICTED: hypothetical protein 
LOC100288060          0.014   PREDICTED: hypothetical protein XP_002343557 
KRTAP10-10            0.014   keratin associated protein 10-10 
EPHA6                 0.012   EPH receptor A6 isoform a 
KNDC1                 0.012   kinase non-catalytic C-lobe domain (KIND) containin...
OTUD1                 0.012   OTU domain containing 1 
RANBP9                0.012   RAN binding protein 9 
C6orf132              0.012   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.012   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.012   PREDICTED: hypothetical protein LOC647024 
RNF19B                0.012   ring finger protein 19B isoform a 
RNF19B                0.012   ring finger protein 19B isoform b 
MAPT                  0.012   microtubule-associated protein tau isoform 6 
MAPT                  0.012   microtubule-associated protein tau isoform 1 
LOC100131244          0.012   PREDICTED: similar to kinase D-interacting substrat...
LOC100293014          0.012   PREDICTED: hypothetical protein 
LOC100129890          0.012   PREDICTED: hypothetical protein 
KRTAP4-6              0.012   PREDICTED: keratin associated protein 4.6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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