Guide to the Human Genome
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Name: NEUROD2 Sequence: fasta or formatted (382aa) NCBI GI: 98986461
Description:

neurogenic differentiation 2

Referenced in:

Neurons
Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         37           3
 C cysteine            1.8          7           1
 D aspartate           4.2         16           2
 E glutamate           9.2         35          10
 F phenylalanine       2.4          9           2
 G glycine            11.5         44           4
 H histidine           3.7         14           2
 I isoleucine          0.8          3           1
 K lysine              5.5         21           2
 L leucine            10.2         39           2
 M methionine          1.8          7           1
 N asparagine          3.7         14           1
 P proline             8.4         32           6
 Q glutamine           2.4          9           1
 R arginine            6.5         25           2
 S serine              7.6         29           2
 T threonine           3.4         13           2
 V valine              2.9         11           2
 W tryptophan          0.5          2           1
 Y tyrosine            3.9         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurogenic differentiation 2 
NEUROD1               0.389   neurogenic differentiation 1 
NEUROD6               0.359   neurogenic differentiation 6 
NEUROD4               0.296   neurogenic differentiation 4 
NEUROG1               0.083   neurogenin 1 
NEUROG3               0.079   neurogenin 3 
NEUROG2               0.079   neurogenin 2 
FERD3L                0.070   nephew of atonal 3 
BHLHE23               0.069   basic helix-loop-helix domain containing, class B, 4...
ATOH8                 0.068   atonal homolog 8 
OLIG2                 0.062   oligodendrocyte lineage transcription factor 2 [Homo...
ATOH1                 0.060   atonal homolog 1 
ATOH7                 0.059   atonal homolog 7 
BHLHA15               0.053   basic helix-loop-helix family, member a15 
BHLHE22               0.051   basic helix-loop-helix domain containing, class B, 5...
OLIG3                 0.048   oligodendrocyte transcription factor 3 
TCF15                 0.047   basic helix-loop-helix transcription factor 15 [Homo...
OLIG1                 0.046   oligodendrocyte transcription factor 1 
MSC                   0.044   musculin 
MSGN1                 0.044   mesogenin 1 
SCXB                  0.044   scleraxis homolog B 
TWIST2                0.044   twist homolog 2 
SCXA                  0.044   scleraxis homolog A 
BHLHA9                0.043   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.043   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.043   PREDICTED: basic helix-loop-helix family, member a9...
PTF1A                 0.042   pancreas specific transcription factor, 1a 
TCF21                 0.042   transcription factor 21 
TCF21                 0.042   transcription factor 21 
FIGLA                 0.036   factor in the germline alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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