Guide to the Human Genome
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Name: LOC100293014 Sequence: fasta or formatted (131aa) NCBI GI: 239753283
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         11           3
 C cysteine            0.8          1           1
 D aspartate           0.0          0           0
 E glutamate           6.9          9           2
 F phenylalanine       1.5          2           1
 G glycine            12.2         16           2
 H histidine           1.5          2           1
 I isoleucine          0.0          0           0
 K lysine              3.1          4           1
 L leucine             9.2         12           2
 M methionine          3.8          5           1
 N asparagine          0.8          1           1
 P proline            11.5         15           2
 Q glutamine           9.2         12           2
 R arginine           12.2         16           1
 S serine              9.2         12           1
 T threonine           2.3          3           1
 V valine              4.6          6           1
 W tryptophan          1.5          2           2
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131091          0.041   PREDICTED: hypothetical protein 
LOC100131091          0.041   PREDICTED: hypothetical protein 
AFF1                  0.037   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
LOC100129129          0.033   PREDICTED: hypothetical protein 
WDR33                 0.029   WD repeat domain 33 isoform 1 
LOC401180             0.029   PREDICTED: similar to hCG1745223 
LOC728351             0.029   PREDICTED: hypothetical protein 
LOC100288294          0.029   PREDICTED: hypothetical protein 
LOC401180             0.029   PREDICTED: similar to hCG1745223 
LOC728351             0.029   PREDICTED: hypothetical protein 
LOC100288294          0.029   PREDICTED: hypothetical protein XP_002342927 
LOC401180             0.029   PREDICTED: similar to hCG1745223 
MAST4                 0.029   microtubule associated serine/threonine kinase fami...
SCARF1                0.029   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.029   scavenger receptor class F, member 1 isoform 5 prec...
LOC728671             0.029   PREDICTED: hypothetical protein 
LOC728671             0.029   PREDICTED: hypothetical protein 
LOC728671             0.029   PREDICTED: hypothetical protein 
TFAP2A                0.029   transcription factor AP-2 alpha isoform c 
TFAP2A                0.029   transcription factor AP-2 alpha isoform b 
TFAP2A                0.029   transcription factor AP-2 alpha isoform a 
SYN3                  0.024   synapsin III isoform IIIg 
SYN3                  0.024   synapsin III isoform IIIa 
GPR156                0.024   G protein-coupled receptor 156 
NACA                  0.020   nascent polypeptide-associated complex alpha subuni...
HMGA2                 0.020   high mobility group AT-hook 2 isoform b 
HMGA2                 0.020   high mobility group AT-hook 2 isoform a 
ARID1A                0.020   AT rich interactive domain 1A isoform a 
ARID1A                0.020   AT rich interactive domain 1A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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