Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100129890 Sequence: fasta or formatted (707aa) NCBI GI: 169215350
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {707aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         56           2
 C cysteine            3.0         21           1
 D aspartate           2.4         17           1
 E glutamate           3.3         23           2
 F phenylalanine       1.4         10           1
 G glycine            11.9         84           2
 H histidine           2.4         17           1
 I isoleucine          1.0          7           1
 K lysine              3.7         26           1
 L leucine             8.5         60           2
 M methionine          0.8          6           1
 N asparagine          1.4         10           1
 P proline            12.0         85           3
 Q glutamine           5.2         37           2
 R arginine            9.3         66           2
 S serine             10.5         74           2
 T threonine           4.2         30           1
 V valine              7.9         56           2
 W tryptophan          2.1         15           1
 Y tyrosine            1.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129890          0.995   PREDICTED: hypothetical protein 
FLJ22184              0.026   PREDICTED: hypothetical protein FLJ22184 
SETD1B                0.022   SET domain containing 1B 
FLJ22184              0.019   PREDICTED: hypothetical protein LOC80164 
MICAL3                0.017   microtubule associated monoxygenase, calponin and L...
IER5L                 0.017   immediate early response 5-like 
SAMD1                 0.017   sterile alpha motif domain containing 1 
SF3A2                 0.016   splicing factor 3a, subunit 2 
PRDM2                 0.016   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.016   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.016   retinoblastoma protein-binding zinc finger protein i...
UBN2                  0.015   ubinuclein 2 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
MLL4                  0.015   myeloid/lymphoid or mixed-lineage leukemia 4 
YLPM1                 0.015   YLP motif containing 1 
PRR12                 0.015   proline rich 12 
SFPQ                  0.015   splicing factor proline/glutamine rich (polypyrimidin...
SETD1A                0.015   SET domain containing 1A 
CBLL1                 0.015   Cas-Br-M (murine) ecotropic retroviral transforming...
WIPF3                 0.015   WAS/WASL interacting protein family, member 3 [Homo...
ANKRD17               0.015   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.015   ankyrin repeat domain protein 17 isoform b 
C2orf71               0.015   hypothetical protein LOC388939 
FIP1L1                0.014   FIP1 like 1 isoform 2 
SHANK1                0.014   SH3 and multiple ankyrin repeat domains 1 
RBM26                 0.014   RNA binding motif protein 26 
GGN                   0.014   gametogenetin 
KIAA0754              0.013   hypothetical protein LOC643314 
ENAH                  0.013   enabled homolog isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press