Guide to the Human Genome
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Name: OTUD1 Sequence: fasta or formatted (481aa) NCBI GI: 223941923
Description:

OTU domain containing 1

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.0         77           4
 C cysteine            2.1         10           1
 D aspartate           5.0         24           1
 E glutamate           6.9         33           2
 F phenylalanine       1.7          8           1
 G glycine             8.1         39           2
 H histidine           3.3         16           1
 I isoleucine          2.9         14           2
 K lysine              2.7         13           1
 L leucine             7.9         38           3
 M methionine          1.5          7           1
 N asparagine          1.9          9           1
 P proline            11.9         57           2
 Q glutamine           3.1         15           1
 R arginine            6.4         31           2
 S serine              6.9         33           2
 T threonine           3.3         16           2
 V valine              4.0         19           2
 W tryptophan          1.5          7           1
 Y tyrosine            3.1         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   OTU domain containing 1 
OTUD5                 0.048   OTU domain containing 5 isoform a 
OTUD5                 0.045   OTU domain containing 5 isoform b 
OTUD5                 0.045   OTU domain containing 5 isoform b 
NACA                  0.039   nascent polypeptide-associated complex alpha subuni...
C2orf55               0.038   hypothetical protein LOC343990 
KIAA0754              0.036   hypothetical protein LOC643314 
UNCX                  0.036   UNC homeobox 
COL1A1                0.035   alpha 1 type I collagen preproprotein 
TAF4                  0.035   TBP-associated factor 4 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.032   PREDICTED: hypothetical protein LOC80164 
OTUD5                 0.031   OTU domain containing 5 isoform c 
SETD1A                0.030   SET domain containing 1A 
OTUD3                 0.030   OTU domain containing 3 
COL2A1                0.030   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.030   collagen, type II, alpha 1 isoform 2 precursor [Hom...
ZFPM1                 0.029   zinc finger protein, multitype 1 
KRTAP4-6              0.028   PREDICTED: keratin associated protein 4.6 
MUC7                  0.028   mucin 7, secreted precursor 
MUC7                  0.028   mucin 7, secreted precursor 
MUC7                  0.028   mucin 7, secreted precursor 
BAT2D1                0.028   HBxAg transactivated protein 2 
HIC1                  0.027   hypermethylated in cancer 1 isoform 2 
HIC1                  0.027   hypermethylated in cancer 1 isoform 1 
LMTK3                 0.027   lemur tyrosine kinase 3 
MYO16                 0.027   myosin heavy chain Myr 8 
LOC731551             0.027   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC650354             0.027   PREDICTED: similar to ectonucleotide pyrophosphatas...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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