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Search of human proteins with 169207782
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
(330 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 690 0.0
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 690 0.0
gi|169207410 PREDICTED: hypothetical protein [Homo sapiens] 251 5e-67
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 67 2e-11
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 62 7e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 62 9e-10
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 60 3e-09
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 60 3e-09
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 59 5e-09
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 59 5e-09
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 59 5e-09
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 59 8e-09
gi|48762934 alpha 2 type I collagen [Homo sapiens] 57 2e-08
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 57 3e-08
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 56 4e-08
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 56 5e-08
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 55 7e-08
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 54 3e-07
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 54 3e-07
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 54 3e-07
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 53 4e-07
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 53 4e-07
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 53 4e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 53 4e-07
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 53 4e-07
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 53 4e-07
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 53 4e-07
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 53 4e-07
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 52 1e-06
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 52 1e-06
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 690 bits (1781), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP
Sbjct: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
Query: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL
Sbjct: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
Query: 121 QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGT 180
QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGT
Sbjct: 121 QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGT 180
Query: 181 DPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRR 240
DPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRR
Sbjct: 181 DPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRR 240
Query: 241 RVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYDAGEACGGEKRRFHV 300
RVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYDAGEACGGEKRRFHV
Sbjct: 241 RVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYDAGEACGGEKRRFHV 300
Query: 301 SPVLRPDRTPRAFRALSQRPPRVPELQQEM 330
SPVLRPDRTPRAFRALSQRPPRVPELQQEM
Sbjct: 301 SPVLRPDRTPRAFRALSQRPPRVPELQQEM 330
>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 690 bits (1781), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP
Sbjct: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
Query: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL
Sbjct: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
Query: 121 QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGT 180
QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGT
Sbjct: 121 QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGT 180
Query: 181 DPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRR 240
DPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRR
Sbjct: 181 DPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRR 240
Query: 241 RVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYDAGEACGGEKRRFHV 300
RVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYDAGEACGGEKRRFHV
Sbjct: 241 RVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYDAGEACGGEKRRFHV 300
Query: 301 SPVLRPDRTPRAFRALSQRPPRVPELQQEM 330
SPVLRPDRTPRAFRALSQRPPRVPELQQEM
Sbjct: 301 SPVLRPDRTPRAFRALSQRPPRVPELQQEM 330
>gi|169207410 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 251 bits (642), Expect = 5e-67
Identities = 131/160 (81%), Positives = 133/160 (83%), Gaps = 5/160 (3%)
Query: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP
Sbjct: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
Query: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL
Sbjct: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
Query: 121 Q-----DRLGRASRPGCPPSPRGSRQERGANSPGRSGARG 155
Q R GR R P G R A + + RG
Sbjct: 121 QGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRG 160
Score = 231 bits (590), Expect = 5e-61
Identities = 131/221 (59%), Positives = 142/221 (64%), Gaps = 27/221 (12%)
Query: 136 PRGSRQERGANSPGRSGARGCGGAAAL---QQEPTNFRGRPRPGARGTDPPGRTLP---- 188
PRGS + A + RG +L P + P P RG PP +T+P
Sbjct: 6 PRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPP-QTIPTLFL 64
Query: 189 APLARPSTQPGRRP--GLGRAASPLGPRGAGVTGAGP-----------------ATQGGR 229
A + + PG G G ++ P R G G P + QGGR
Sbjct: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQGGR 124
Query: 230 DRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYDAGE 289
DRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNY AGE
Sbjct: 125 DRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYAAGE 184
Query: 290 ACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM 330
ACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM
Sbjct: 185 ACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM 225
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 67.0 bits (162), Expect = 2e-11
Identities = 68/200 (34%), Positives = 75/200 (37%), Gaps = 29/200 (14%)
Query: 46 PGPER-RG----PRPPQTIPTLFLAGVFSETEAPGSSTHVG-AGNSSDPATSRLGGSRGP 99
PGPE +G P PP T L G+ E GS G G P + G GP
Sbjct: 701 PGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGP 760
Query: 100 H----PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCP--PSPRGSRQERGANSPGRSGA 153
P PPGPAG G PG P PRGS ERG P G
Sbjct: 761 RGPTGPIGPPGPAGQ----------PGDKGEGGAPGLPGIAGPRGSPGERGETGP--PGP 808
Query: 154 RGCGGAAALQQEPTNFRGRPRPGARGTD-PPGRTLPAPLARPSTQPGRRPGLGRAASPLG 212
G GA EP R PG +G PPG P + P+ PG + G SP G
Sbjct: 809 AGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGG 868
Query: 213 PRGAGVTGA----GPATQGG 228
P AG GA GP G
Sbjct: 869 PGAAGFPGARGLPGPPGSNG 888
Score = 55.8 bits (133), Expect = 5e-08
Identities = 75/228 (32%), Positives = 91/228 (39%), Gaps = 48/228 (21%)
Query: 37 GSPLD--RNPLPG-------PERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSD 87
GSP + N LPG P RGP P IP G E APG + GA + +
Sbjct: 468 GSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGE--KGPAGERGAPGPAGPRGA--AGE 523
Query: 88 PATSRLGGSRGPH--PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGA 145
P + G G P P GP GS P GS G + RPG PP P G R + G
Sbjct: 524 PGRDGVPGGPGMRGMPGSPGGP-GSDGKPGPPGSQ----GESGRPG-PPGPSGPRGQPGV 577
Query: 146 ----------NSPGRSGARGCGGAAALQQEP-----TNFRGRPRPGARG-----TDPPG- 184
+PG++G RG G Q P T +G P P G T PPG
Sbjct: 578 MGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGP 637
Query: 185 ---RTLPAPLARP--STQPGRRPGLGRAASPLGPRGAGVTGAGPATQG 227
+ LP P + +PG G A +P P G G GA P +G
Sbjct: 638 QGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGA-PGERG 684
Score = 55.1 bits (131), Expect = 9e-08
Identities = 75/223 (33%), Positives = 87/223 (39%), Gaps = 45/223 (20%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA----GNSSDPATSR 92
GSP N PG +RG PQ AG PG + G G + P
Sbjct: 357 GSP-GSNGAPG--QRGEPGPQGH-----AGAQGPPGPPGINGSPGGKGEMGPAGIPGAPG 408
Query: 93 LGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGA------- 145
L G+RGP PGPAG+ P RG + G+ G P PRG R E G
Sbjct: 409 LMGARGP-----PGPAGANGAPGLRGGAGEP-GKNGAKG-EPGPRGERGEAGIPGVPGAK 461
Query: 146 ------NSPGRSGARGCGGAAALQQEPTNFRGRPRP-GARGTDPP----GRTLPAPLARP 194
SPG GA G GAA + P FRG P G G P G PA
Sbjct: 462 GEDGKDGSPGEPGANGLPGAAGERGAP-GFRGPAGPNGIPGEKGPAGERGAPGPAGPRGA 520
Query: 195 STQPGR-----RPGL-GRAASPLGPRGAGVTGAGPATQGGRDR 231
+ +PGR PG+ G SP GP G G P +QG R
Sbjct: 521 AGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGP-PGSQGESGR 562
Score = 54.3 bits (129), Expect = 1e-07
Identities = 66/202 (32%), Positives = 78/202 (38%), Gaps = 33/202 (16%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
G P P G GP PQ GV E +PG G G + P L G
Sbjct: 837 GPPGVAGPPGGSGPAGPPGPQ--------GVKGERGSPG-----GPGAAGFPGARGLPGP 883
Query: 97 RGPHPTL-PPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARG 155
G + PPGP+GS P + G G A G P SP S + A PG G+ G
Sbjct: 884 PGSNGNPGPPGPSGS---PGKDGPP----GPAGNTGAPGSPGVSGPKGDAGQPGEKGSPG 936
Query: 156 CGGAAALQQEPTNFRGRPRPGARG-TDPPGRTLPAPLARPSTQ----PGRRPGLGRAASP 210
G P G GARG PPG +P P P Q +PG +
Sbjct: 937 AQGPPG-APGPLGIAG--ITGARGLAGPPG--MPGPRGSPGPQGVKGESGKPGANGLSGE 991
Query: 211 LGPRG-AGVTG-AGPATQGGRD 230
GP G G+ G AG A + GRD
Sbjct: 992 RGPPGPQGLPGLAGTAGEPGRD 1013
Score = 52.0 bits (123), Expect = 7e-07
Identities = 66/209 (31%), Positives = 79/209 (37%), Gaps = 31/209 (14%)
Query: 46 PGPERRGPRPPQTIPTLF-LAGVFSETEAPGSSTHVGA----GNSSDPATSRLGGSRGPH 100
PGP GP P+ P + G APG + G G P + G +GP
Sbjct: 563 PGPP--GPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPP 620
Query: 101 -PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGA 159
PT P G G P +G LQ G PG P + A +PG G +G GA
Sbjct: 621 GPTGPGGDKGDTGPPGPQG-LQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGA 679
Query: 160 AALQQEPTNFRGRP-------RPGARG----TDPPGRTLPAPLARPSTQ--PGRRPGLGR 206
++ P G P PG G PPG P P Q PG R GLG
Sbjct: 680 PG-ERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGP--PGAAGTPGLQGMPGERGGLG- 735
Query: 207 AASPLGPRGAGVTGAGPATQG--GRDRGR 233
SP GP+G GP G G+D R
Sbjct: 736 --SP-GPKGDKGEPGGPGADGVPGKDGPR 761
Score = 48.1 bits (113), Expect = 1e-05
Identities = 57/189 (30%), Positives = 66/189 (34%), Gaps = 45/189 (23%)
Query: 73 APGSSTHVGAGNSSDPA-TSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDR------- 123
APG+ H G PA S G GP P PGPAGS P +G D+
Sbjct: 1042 APGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERG 1101
Query: 124 -------LGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPG 176
G PG P SP + Q+ SPG +G RG G + PG
Sbjct: 1102 AAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSG------------PPG 1149
Query: 177 ARGTDPPGRTLPAPLARPSTQPGR-------RPGLGRAASPLGPRGA------GVTGAGP 223
GT P P+ P + R PG P GP GA GV A
Sbjct: 1150 KDGTSGH----PGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAI 1205
Query: 224 ATQGGRDRG 232
A GG G
Sbjct: 1206 AGIGGEKAG 1214
Score = 45.8 bits (107), Expect = 5e-05
Identities = 71/249 (28%), Positives = 83/249 (33%), Gaps = 53/249 (21%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFL 64
GP G P A S G+ R G P +R LPGP G + P IP
Sbjct: 210 GPSGPPGPPGAIGPSGPAGKDGESGRP-----GRPGERG-LPGPP--GIKGPAGIPGF-- 259
Query: 65 AGVFSETEAPGSSTHVGA----GNSSDPATSRLGGSRG-PHPTLPPGPAGSLVFPERRG- 118
PG H G G + L G G P PGP G P RG
Sbjct: 260 ---------PGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGR 310
Query: 119 -------------SLQDRLGRASRPGCP-----PSPRGSRQERG-ANSPGRSGARGCGGA 159
+ G+ PG P P G++ E G A SPG +GA G G
Sbjct: 311 PGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGE 370
Query: 160 AALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVT 219
Q +G P P P G+ P P PGL A P GP GA
Sbjct: 371 PG-PQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGA-----PGLMGARGPPGPAGA--- 421
Query: 220 GAGPATQGG 228
P +GG
Sbjct: 422 NGAPGLRGG 430
Score = 44.3 bits (103), Expect = 2e-04
Identities = 61/183 (33%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 83 GNSSDPATSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQ 141
G S P + L G RGP P PG AG+ P R G+ G PG SP G +
Sbjct: 978 GESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNP----GSDGLPGRDGSP-GGKG 1032
Query: 142 ERGAN-SPG------------------RSGARGCGGAA--ALQQEPTNFRGRPRP-GARG 179
+RG N SPG +SG RG G A A P RG P P G RG
Sbjct: 1033 DRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRG 1092
Query: 180 ----TDPPG-------RTLPA-PLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQG 227
T G R P P A S P + G + P GPRG GP+
Sbjct: 1093 DKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGP----VGPSGPP 1148
Query: 228 GRD 230
G+D
Sbjct: 1149 GKD 1151
Score = 42.4 bits (98), Expect = 6e-04
Identities = 65/240 (27%), Positives = 78/240 (32%), Gaps = 50/240 (20%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
P P +GP+ P+ P G+ PG G+ S P GP
Sbjct: 95 PTRPPNGQGPQGPKGDPGP--PGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYS 152
Query: 104 PPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGA-NSPGRSGARGCGGAAAL 162
P + + G L G A PG PP P G+ G+ SPG G G G A
Sbjct: 153 PQYDSYDVKSGVAVGGLAGYPGPAGPPG-PPGPPGTSGHPGSPGSPGYQGPPGEPGQAGP 211
Query: 163 QQEP--------------TNFRGRP-RPGARG-TDPPGRTLPAPLARPSTQPGRR----- 201
P GRP RPG RG PPG PA + G R
Sbjct: 212 SGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGR 271
Query: 202 ------------------PGLGRAASPLGPRGA-------GVTGAGPATQGGRDRGRWGR 236
PG A P+GPRGA G+ GA A RG G+
Sbjct: 272 NGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQ 331
Score = 42.4 bits (98), Expect = 6e-04
Identities = 57/197 (28%), Positives = 67/197 (34%), Gaps = 60/197 (30%)
Query: 74 PGSSTHVG-AGNSSDPATSRLGGSRGPH----PTLPPGPAGSLVFPERRGSLQDRLGRAS 128
PG + G G P + G RG T PPGPAG FP G + G+
Sbjct: 770 PGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAG---FPGAPGQNGEPGGKGE 826
Query: 129 R----------------------PGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEP 166
R P PP P+G + ERG SPG GA G GA L P
Sbjct: 827 RGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERG--SPGGPGAAGFPGARGLPGPP 884
Query: 167 TNFRGRP----------------------RPGARGTDPPGRTLPAPLARPSTQPGRRPGL 204
+ G P PG+ G P P + S PG
Sbjct: 885 GS-NGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPG- 942
Query: 205 GRAASPLGPRGAGVTGA 221
A PLG AG+TGA
Sbjct: 943 --APGPLGI--AGITGA 955
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 62.0 bits (149), Expect = 7e-10
Identities = 72/229 (31%), Positives = 87/229 (37%), Gaps = 48/229 (20%)
Query: 45 LPGP--ERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVG-AGNSSDPAT----SRLGGSR 97
LPGP E+ P PP L G + G G AGN DP T R G S
Sbjct: 651 LPGPSGEKGEPGPPG----FGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSG 706
Query: 98 GPHPTLPPGPAGS-----LVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSG 152
P P GP G P +G++ D GR +PG P+G + G PG+ G
Sbjct: 707 EPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPG----PKGEQGPEGVGRPGKPG 762
Query: 153 ARGCGGAAALQQEPTNFRG---RPRPGARGTDPPGRTLPAP-------LARPSTQPGRR- 201
G G Q P +G P P RG P AP L P PG
Sbjct: 763 QPGLPGV----QGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTG 818
Query: 202 -------PGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRRRVP 243
PG+ A P+GP GA V+G GRD G+ G+ R P
Sbjct: 819 EKGAQGSPGVKGATGPVGPPGASVSG-----PPGRD-GQQGQTGLRGTP 861
Score = 52.8 bits (125), Expect = 4e-07
Identities = 70/228 (30%), Positives = 80/228 (35%), Gaps = 52/228 (22%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP------ 99
PGP P PP L G+ + PG DP + G GP
Sbjct: 1200 PGP----PGPPGIQGPAGLDGLDGKDGKPGLR--------GDPGPAGPPGLMGPPGFKGK 1247
Query: 100 --HPTLP--------PGPAGSLVFPERRGSLQDRLGRASRPGCP-----PSPRGSRQERG 144
HP LP PGP GS P G +G RPG P P P G G
Sbjct: 1248 TGHPGLPGPKGDCGKPGPPGSTGRPGAEGE-PGAMGPQGRPGPPGHVGPPGPPGQPGPAG 1306
Query: 145 ANSPGRSGARGCGGAAAL-----QQEPTNFRGRP-RPGARGT----DPPGRT----LPAP 190
++ G G RG G L Q P G P PG G PPG+ P P
Sbjct: 1307 ISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGP 1366
Query: 191 LARPST--QPGRRPGLGRAASPLGPRGAGVTG-AGPATQGGRDRGRWG 235
P Q G+ GRA P GP +G G GP G +RG G
Sbjct: 1367 KGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAG-ERGHPG 1413
Score = 42.0 bits (97), Expect = 8e-04
Identities = 56/204 (27%), Positives = 75/204 (36%), Gaps = 25/204 (12%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRL 124
A V ET A V S+ + G G PGP GS RG+ R+
Sbjct: 305 AKVHQETAADECPPCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEKGARGNDCVRI 364
Query: 125 GRASRPGCPPSPRGSRQERGANSP----------GRSGARGCGGAAALQQEPTNFRGRPR 174
+ C P+G + E GA P G+ G +G GG + +P GRP
Sbjct: 365 SPDAPLQCAEGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGR-DGRPG 423
Query: 175 P----GARG-TDPPGRTLPAPLARPSTQPG--RRPGLGRAAS------PLGPRGAGVTGA 221
G +G PG P LA PG PG+G + P GP+G +
Sbjct: 424 EICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSG 483
Query: 222 GPATQG-GRDRGRWGRWVRRRVPC 244
P +G G G+ G + PC
Sbjct: 484 IPGKEGPGGKPGKPGVKGEKGDPC 507
Score = 37.7 bits (86), Expect = 0.014
Identities = 41/145 (28%), Positives = 50/145 (34%), Gaps = 13/145 (8%)
Query: 83 GNSSDPATSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDR-----LGRASRPGCPPSP 136
G + + GS GP P PPG G++ P G +R G PG P P
Sbjct: 1030 GQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQP 1089
Query: 137 RGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARG-TDPPGRTLPAPLARPS 195
PG G RG G+A + EP PG+ G PPG P P
Sbjct: 1090 GYPGATGPPGLPGIKGERGYTGSAGEKGEP------GPPGSEGLPGPPGPAGPRGERGPQ 1143
Query: 196 TQPGRRPGLGRAASPLGPRGAGVTG 220
G + G P P G G
Sbjct: 1144 GNSGEKGDQGFQGQPGFPGPPGPPG 1168
Score = 37.0 bits (84), Expect = 0.024
Identities = 39/121 (32%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 64 LAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL----PPGPAGSLVFPERRGS 119
LAG+ + PG G +P T G GP PPGP G ++G
Sbjct: 1324 LAGLPGQPGPPGHP-----GPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQ 1378
Query: 120 LQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPR-PGAR 178
++ GRA PG P GS G PG +G RG GA P+ G P PG+
Sbjct: 1379 AGEK-GRAGMPG-GPGKSGSMGPVGP--PGPAGERGHPGAPG----PSGSPGLPGVPGSM 1430
Query: 179 G 179
G
Sbjct: 1431 G 1431
Score = 34.3 bits (77), Expect = 0.16
Identities = 57/189 (30%), Positives = 66/189 (34%), Gaps = 57/189 (30%)
Query: 74 PGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCP 133
PG S +G PA G RG HP P GP+GS P GS+ D +
Sbjct: 1391 PGKSGSMGPVGPPGPA-----GERG-HPGAP-GPSGSPGLPGVPGSMGDMV------NYD 1437
Query: 134 PSPRGSRQE--------------------RGANSPGRSGARGCGGAAALQQEPTNFRGRP 173
R RQE A +PGR G G GA
Sbjct: 1438 EIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPG------------ 1485
Query: 174 RPGARGTDPPGRTLPAPLARPSTQ--PGRRPGLGRAASPLGPRGAGVTGAG-----PATQ 226
RPGA G+ PG LP + R Q PG R GL G G G+ G P Q
Sbjct: 1486 RPGAPGS--PG--LPGQIGREGRQGLPGVR-GLPGTKGEKGDIGIGIAGENGLPGPPGPQ 1540
Query: 227 GGRDRGRWG 235
G G+ G
Sbjct: 1541 GPPGYGKMG 1549
Score = 28.9 bits (63), Expect = 6.6
Identities = 34/113 (30%), Positives = 43/113 (38%), Gaps = 19/113 (16%)
Query: 125 GRASRPGCPPSPRGSRQERG-ANSPGRSGARGCGGAAALQQEPT------------NFRG 171
GRA PG +G+ E G A SPG G G G + EP + R
Sbjct: 590 GRAGVPGLK-GEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRV 648
Query: 172 RPRPGARG----TDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTG 220
PG G PPG LP + + + G + G A +P P G TG
Sbjct: 649 VALPGPSGEKGEPGPPGFGLPGKQGK-AGERGLKGQKGDAGNPGDPGTPGTTG 700
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 61.6 bits (148), Expect = 9e-10
Identities = 68/195 (34%), Positives = 84/195 (43%), Gaps = 26/195 (13%)
Query: 47 GPER-RGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPP 105
GP+ RG PQ GV E PG + AG + +P G++G + P
Sbjct: 356 GPQGPRGSEGPQ--------GVRGEPGPPGPAG--AAGPAGNPGADGQPGAKGANGA--P 403
Query: 106 GPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGA-NSPGRSGARGCGGAAALQQ 164
G AG+ FP RG PG PP P+G+ E GA S G +GA+G G +Q
Sbjct: 404 GIAGAPGFPGARGP-----SGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQG 458
Query: 165 EPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRR--PGLGRAASPLGPRG-AGVTG- 220
P + GARG +P LP P PG R PG A P GP G G G
Sbjct: 459 PPGPAGEEGKRGARG-EPGPTGLPGPPGERG-GPGSRGFPGADGVAGPKGPAGERGSPGP 516
Query: 221 AGPATQGGRDRGRWG 235
AGP G + GR G
Sbjct: 517 AGPKGSPG-EAGRPG 530
Score = 52.0 bits (123), Expect = 7e-07
Identities = 83/263 (31%), Positives = 94/263 (35%), Gaps = 60/263 (22%)
Query: 45 LPGP--ERRGPRP---PQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRG 98
LPGP ER GP P G E +PG + G+ G + P + L G++G
Sbjct: 480 LPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKG 539
Query: 99 -------PHP---TLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANS- 147
P P T PPGPAG QD RPG PP P G+R + G
Sbjct: 540 LTGSPGSPGPDGKTGPPGPAG-----------QD-----GRPG-PPGPPGARGQAGVMGF 582
Query: 148 PGRSGARGCGGAAALQQEPTNFRGRPRP----GARGTD-------PPGRTLPAPLARPST 196
PG GA G G A RG P P G G D PPG PA R
Sbjct: 583 PGPKGAAGEPGKA-------GERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAG-ERGEQ 634
Query: 197 QPGRRPGLGRAASPLGPRG-------AGVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGL 249
P PG P GP G GV G A RG G R V P
Sbjct: 635 GPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPA 694
Query: 250 RPHERAGAALLATCRGNAPTPSA 272
P GA +G+A P A
Sbjct: 695 GPRGANGAPGNDGAKGDAGAPGA 717
Score = 51.6 bits (122), Expect = 1e-06
Identities = 65/209 (31%), Positives = 84/209 (40%), Gaps = 48/209 (22%)
Query: 81 GAGNSSDPATSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGS 139
G+ + +D T+ + G +G P P GPAG P R + G+ PG PP P
Sbjct: 98 GSESPTDQETTGVEGPKGDTGPRGPRGPAG----PPGRDGIP---GQPGLPG-PPGP--- 146
Query: 140 RQERGANSPGRSGARGCGGAAALQ----QEPTNFRGRPRPGARGTDPPGRTLPAPLARPS 195
PG G G GG A Q + + G PG G P R LP P P
Sbjct: 147 --------PGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGP-RGLPGPPGAPG 197
Query: 196 TQ----PGRRPGLGRAASPLGPRGAGVTGAGPATQGGRD--RGRWGRWVRRRVPCP---- 245
Q P PG A+ P+GPRG GP + G D G+ GR R P P
Sbjct: 198 PQGFQGPPGEPGEPGASGPMGPRGP----PGPPGKNGDDGEAGKPGRPGERGPPGPQGAR 253
Query: 246 -------LPGLRPHERAGAALLATCRGNA 267
LPG++ H G + L +G+A
Sbjct: 254 GLPGTAGLPGMKGHR--GFSGLDGAKGDA 280
Score = 45.8 bits (107), Expect = 5e-05
Identities = 72/255 (28%), Positives = 82/255 (32%), Gaps = 73/255 (28%)
Query: 37 GSPLDRNPLPGPERRG--PRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLG 94
G+ D P PGP P P + G PG++ GA P G
Sbjct: 833 GAKGDAGP-PGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPP----G 887
Query: 95 GSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPG--CPPSPRGSRQERG-------A 145
S P PPGPAG RG G A RPG PP P G E+G A
Sbjct: 888 PSGNAGPPGPPGPAGKEGGKGPRGET----GPAGRPGEVGPPGPPGPAGEKGSPGADGPA 943
Query: 146 NSPGRSGARGCGGAAAL-----QQEPTNFRGRPRP----------GARGT-DPPGRTLPA 189
+PG G +G G + Q+ F G P P GA G PPG P
Sbjct: 944 GAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPP 1003
Query: 190 PLARP-----------------------------STQPGRRPGLGRAASPLGPRGAGVTG 220
LA P T P PG A GP
Sbjct: 1004 GLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGP------- 1056
Query: 221 AGPATQGGRDRGRWG 235
GPA + G DRG G
Sbjct: 1057 VGPAGKSG-DRGETG 1070
Score = 44.7 bits (104), Expect = 1e-04
Identities = 67/201 (33%), Positives = 74/201 (36%), Gaps = 63/201 (31%)
Query: 46 PG-PERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLP 104
PG P RGP PQ G+ PG H G S L G++G P
Sbjct: 238 PGRPGERGPPGPQGA-----RGLPGTAGLPGMKGHRGF--------SGLDGAKGDAG--P 282
Query: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGA-NSPGRSGARGCGGAAALQ 163
GP G P G+ PG PRG ERG +PG +GARG GA
Sbjct: 283 AGPKGEPGSPGENGA----------PG-QMGPRGLPGERGRPGAPGPAGARGNDGAT--- 328
Query: 164 QEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGA----GVT 219
GA G PPG T P A P PG G A P GPRG+ GV
Sbjct: 329 ------------GAAG--PPGPTGP---AGPPGFPGAVGAKGE-AGPQGPRGSEGPQGVR 370
Query: 220 G----------AGPATQGGRD 230
G AGPA G D
Sbjct: 371 GEPGPPGPAGAAGPAGNPGAD 391
Score = 44.7 bits (104), Expect = 1e-04
Identities = 60/199 (30%), Positives = 71/199 (35%), Gaps = 32/199 (16%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGG 95
G P + P RGP P P L AG PG S GA G P G
Sbjct: 980 GEPGKQGPSGASGERGPPGPMGPPGL--AG------PPGESGREGAPGAEGSPGRDGSPG 1031
Query: 96 SRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRASRPGC-----PPSPRGSRQERGANSP- 148
++G T P GP G+ P G + G A + G P P G GA P
Sbjct: 1032 AKGDRGETGPAGPPGAPGAPGAPGPV----GPAGKSGDRGETGPAGPAGPVGPVGARGPA 1087
Query: 149 GRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAA 208
G G RG G Q + R G +G PPG P PG + G A+
Sbjct: 1088 GPQGPRGDKGETGEQGDRGIKGHRGFSGLQG--PPG---------PPGSPGEQ-GPSGAS 1135
Query: 209 SPLGPRGAGVTGAGPATQG 227
P GPRG + P G
Sbjct: 1136 GPAGPRGPPGSAGAPGKDG 1154
Score = 41.2 bits (95), Expect = 0.001
Identities = 61/202 (30%), Positives = 73/202 (36%), Gaps = 25/202 (12%)
Query: 37 GSPLDRNP--LPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVG-AGNSSDPATSRL 93
G P +R LPGP +G R AG +PG G G P +
Sbjct: 728 GMPGERGAAGLPGP--KGDRGD--------AGPKGADGSPGKDGVRGLTGPIGPPGPAGA 777
Query: 94 GGSRGPH-PTLPPGPAGSLVFPERRGSL--QDRLGRASRPGCPPSPRGSRQERGANSPGR 150
G +G P+ P GP G+ P RG G A PG P + A + G
Sbjct: 778 PGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGD 837
Query: 151 SGARGCGGAAALQQEPTNFRGRPRPGARGT-DPPGRT-LPAPLARPSTQPGRRPGLGRAA 208
+G G G A N GARG+ PPG T P R PG A
Sbjct: 838 AGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGP-----PGPSGNA 892
Query: 209 SPLGPRG-AGVTGA-GPATQGG 228
P GP G AG G GP + G
Sbjct: 893 GPPGPPGPAGKEGGKGPRGETG 914
Score = 30.4 bits (67), Expect = 2.3
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 19/86 (22%)
Query: 74 PGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCP 133
PGS G +S PA G RGP PG AG+ +D L P P
Sbjct: 1123 PGSPGEQGPSGASGPA-----GPRGP-----PGSAGA--------PGKDGLNGLPGPIGP 1164
Query: 134 PSPRGSRQERG-ANSPGRSGARGCGG 158
P PRG + G PG G G G
Sbjct: 1165 PGPRGRTGDAGPVGPPGPPGPPGPPG 1190
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 59.7 bits (143), Expect = 3e-09
Identities = 77/239 (32%), Positives = 88/239 (36%), Gaps = 58/239 (24%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLG--GSRG-PHPT 102
PGP+ P PT GV A G+ GA A R+G GS G P P
Sbjct: 863 PGPQGPSGAPGPQGPT----GVTGPKGARGAQGPPGA-TGFPGAAGRVGPPGSNGNPGPP 917
Query: 103 LPPGPAGSLVFPERRGSLQDRLGRASRPGC-----------------------PPSPRGS 139
PPGP+G RG GRA PG PP P+G
Sbjct: 918 GPPGPSGKDGPKGARGD-SGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 976
Query: 140 RQERG-ANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGT-DPPGRTLPAPLARPSTQ 197
+RG PG+ G RG G EP + PGA G PPG P L P+ +
Sbjct: 977 AGQRGIVGLPGQRGERGFPGLPGPSGEPGK---QGAPGASGDRGPPGPVGPPGLTGPAGE 1033
Query: 198 PGRR--------PGLGRAASPLGPRG-AGVTGA----------GPATQGGR--DRGRWG 235
PGR PG AA G RG G GA GPA G+ DRG G
Sbjct: 1034 PGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAG 1092
Score = 57.4 bits (137), Expect = 2e-08
Identities = 71/246 (28%), Positives = 91/246 (36%), Gaps = 46/246 (18%)
Query: 36 LGSPLDRNPLPGPERRGPR----PPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPA-- 89
+G P P P R G PP + G ET A G+ G S PA
Sbjct: 1022 VGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP 1081
Query: 90 TSRLG-----GSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERG 144
T + G G++GP P GPAG+ +G D+ G A PG RG + RG
Sbjct: 1082 TGKQGDRGEAGAQGPMG--PSGPAGARGIQGPQGPRGDK-GEAGEPG----ERGLKGHRG 1134
Query: 145 ANS-------PGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPS-- 195
PG SG +G G A P+ RG P P +P P+ P
Sbjct: 1135 FTGLQGLPGPPGPSGDQGASGPAG----PSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR 1190
Query: 196 -----TQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLR 250
T P PG P GP G G+ + A G R++G P PL +R
Sbjct: 1191 GRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKG----------PDPLQYMR 1240
Query: 251 PHERAG 256
+ AG
Sbjct: 1241 ADQAAG 1246
Score = 49.7 bits (117), Expect = 4e-06
Identities = 51/159 (32%), Positives = 63/159 (39%), Gaps = 22/159 (13%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQE 142
GN +P + G GP PPGP G P G + G+A G PP P+G+R
Sbjct: 225 GNPGEPGEPGVSGPMGPRG--PPGPPGK---PGDDGEA-GKPGKAGERG-PPGPQGARGF 277
Query: 143 RGANS----------PGRSGARGCGGAAALQQE--PTNFRGRPRP-GARG-TDPPGRTLP 188
G PG GA+G GA ++ E G P P G RG GRT P
Sbjct: 278 PGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGP 337
Query: 189 APLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQG 227
A A G +PG P+GP G P +G
Sbjct: 338 AGAAGARGNDG-QPGPAGPPGPVGPAGGPGFPGAPGAKG 375
Score = 49.3 bits (116), Expect = 5e-06
Identities = 58/198 (29%), Positives = 73/198 (36%), Gaps = 39/198 (19%)
Query: 66 GVFSETEAPGSSTHVGA-------GNSSDPATSRLGGSRG----PHPTLPPGP---AGSL 111
GV E+ +PG + G G + G+RG P P PPGP AG
Sbjct: 306 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 365
Query: 112 VFPERRGSL-----------QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAA 160
FP G+ + G PG P SP + + G GA+G GA
Sbjct: 366 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAP 425
Query: 161 ALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRG----A 216
+ P PG RG PPG P Q G PG+ GP+G A
Sbjct: 426 GIAGAP------GFPGPRG--PPGPQGATGPLGPKGQTG-EPGIAGFKGEQGPKGEPGPA 476
Query: 217 GVTGA-GPATQGGRDRGR 233
G GA GPA + G+ R
Sbjct: 477 GPQGAPGPAGEEGKRGAR 494
Score = 46.2 bits (108), Expect = 4e-05
Identities = 65/215 (30%), Positives = 72/215 (33%), Gaps = 43/215 (20%)
Query: 46 PGPERRGPRP-----PQTIPTLFLAGVFSETEAPGSSTHVGA-------GNSSDPATSRL 93
PGP G +P P L G E PG GA G P T
Sbjct: 671 PGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGP 730
Query: 94 GGSRGPH-PTLPPGPAGSLVFPERRGSLQ------DR--LGRASRPGCPPSPRGSRQERG 144
G+ GP P GP G P RG+ DR +G G P G
Sbjct: 731 KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP 790
Query: 145 ANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARG-TDPPGRTLPAPLARP---STQPGR 200
PG +GA G G + R PG RG T PPG PA A P QPG
Sbjct: 791 IGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPG---PAGFAGPPGADGQPGA 847
Query: 201 RPGLGRAAS--------PLGPRGA-------GVTG 220
+ G A P GP GA GVTG
Sbjct: 848 KGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTG 882
Score = 45.8 bits (107), Expect = 5e-05
Identities = 82/295 (27%), Positives = 97/295 (32%), Gaps = 72/295 (24%)
Query: 3 GVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNP--LPGPERRGPRPPQTIP 60
GVGP G P + A RG L G+P +R P L GP+ P +
Sbjct: 499 GVGPIGPPGE-----RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 553
Query: 61 TLFLAGVFSETEAPGSSTHVG-AGNSSDPATSRLGGSRGPHPTLP-------PGPAGSLV 112
L G T PG + G G S P G GP PGP G+
Sbjct: 554 P-GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANG 612
Query: 113 FPERRGSL--------------QDRLGRASRPGCPPSPRGSRQERGA------------- 145
P + G G A PG P P G R E+GA
Sbjct: 613 EPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG-PAGPAGERGEQGAPGPSGFQGLPGPP 671
Query: 146 ------NSPGRSGARGCGGAAALQQEPTNFRGRP----RPGARGTD-------PPGRTLP 188
PG G G GA L P RG P PGA+G PG P
Sbjct: 672 GPPGEGGKPGDQGVPGEAGAPGL-VGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGP 730
Query: 189 APLARPSTQPGRR--------PGLGRAASPLGPRG--AGVTGAGPATQGGRDRGR 233
+ P+ PG + PG AA GP+G V GP G+D GR
Sbjct: 731 KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGR 785
Score = 40.4 bits (93), Expect = 0.002
Identities = 58/199 (29%), Positives = 71/199 (35%), Gaps = 48/199 (24%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPA-TSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDR 123
AG + APG GA P + G+RG GP G+ FP G +
Sbjct: 854 AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ-----GPPGATGFPGAAGRVGPP 908
Query: 124 LGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARG---- 179
G PG PP P G + G GARG G EP PG +G
Sbjct: 909 -GSNGNPG-PPGPPGP-----SGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD 961
Query: 180 ------TDPPG-------------------RTLPAPLARPSTQPGRR--PGLGRAASPLG 212
PPG R P L PS +PG++ PG P G
Sbjct: 962 DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG-LPGPSGEPGKQGAPGASGDRGPPG 1020
Query: 213 PRG-AGVTGAGPATQGGRD 230
P G G+T GPA + GR+
Sbjct: 1021 PVGPPGLT--GPAGEPGRE 1037
Score = 39.3 bits (90), Expect = 0.005
Identities = 40/131 (30%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSP-GRSGARGCGGAAALQ 163
PGP G P G ++D +G P PP P+G E+G G G +G G
Sbjct: 100 PGPKGQKGEP---GDIKDIVG----PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRD 152
Query: 164 QEPTNFRGRPRPGARGTDPP---GRTLPAPLARPSTQPGRRPGLGRAASPLGPRG----A 216
EP PG G P G A +A + LG P+GP G
Sbjct: 153 GEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPP 212
Query: 217 GVTGAGPATQG 227
G GA P QG
Sbjct: 213 GPAGA-PGPQG 222
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 59.7 bits (143), Expect = 3e-09
Identities = 77/239 (32%), Positives = 88/239 (36%), Gaps = 58/239 (24%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLG--GSRG-PHPT 102
PGP+ P PT GV A G+ GA A R+G GS G P P
Sbjct: 794 PGPQGPSGAPGPQGPT----GVTGPKGARGAQGPPGA-TGFPGAAGRVGPPGSNGNPGPP 848
Query: 103 LPPGPAGSLVFPERRGSLQDRLGRASRPGC-----------------------PPSPRGS 139
PPGP+G RG GRA PG PP P+G
Sbjct: 849 GPPGPSGKDGPKGARGD-SGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 907
Query: 140 RQERG-ANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGT-DPPGRTLPAPLARPSTQ 197
+RG PG+ G RG G EP + PGA G PPG P L P+ +
Sbjct: 908 AGQRGIVGLPGQRGERGFPGLPGPSGEPGK---QGAPGASGDRGPPGPVGPPGLTGPAGE 964
Query: 198 PGRR--------PGLGRAASPLGPRG-AGVTGA----------GPATQGGR--DRGRWG 235
PGR PG AA G RG G GA GPA G+ DRG G
Sbjct: 965 PGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAG 1023
Score = 57.4 bits (137), Expect = 2e-08
Identities = 71/246 (28%), Positives = 91/246 (36%), Gaps = 46/246 (18%)
Query: 36 LGSPLDRNPLPGPERRGPR----PPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPA-- 89
+G P P P R G PP + G ET A G+ G S PA
Sbjct: 953 VGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP 1012
Query: 90 TSRLG-----GSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERG 144
T + G G++GP P GPAG+ +G D+ G A PG RG + RG
Sbjct: 1013 TGKQGDRGEAGAQGPMG--PSGPAGARGIQGPQGPRGDK-GEAGEPG----ERGLKGHRG 1065
Query: 145 ANS-------PGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPS-- 195
PG SG +G G A P+ RG P P +P P+ P
Sbjct: 1066 FTGLQGLPGPPGPSGDQGASGPAG----PSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR 1121
Query: 196 -----TQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLR 250
T P PG P GP G G+ + A G R++G P PL +R
Sbjct: 1122 GRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKG----------PDPLQYMR 1171
Query: 251 PHERAG 256
+ AG
Sbjct: 1172 ADQAAG 1177
Score = 49.7 bits (117), Expect = 4e-06
Identities = 51/159 (32%), Positives = 63/159 (39%), Gaps = 22/159 (13%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQE 142
GN +P + G GP PPGP G P G + G+A G PP P+G+R
Sbjct: 156 GNPGEPGEPGVSGPMGPRG--PPGPPGK---PGDDGEA-GKPGKAGERG-PPGPQGARGF 208
Query: 143 RGANS----------PGRSGARGCGGAAALQQE--PTNFRGRPRP-GARG-TDPPGRTLP 188
G PG GA+G GA ++ E G P P G RG GRT P
Sbjct: 209 PGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGP 268
Query: 189 APLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQG 227
A A G +PG P+GP G P +G
Sbjct: 269 AGAAGARGNDG-QPGPAGPPGPVGPAGGPGFPGAPGAKG 306
Score = 49.3 bits (116), Expect = 5e-06
Identities = 58/198 (29%), Positives = 73/198 (36%), Gaps = 39/198 (19%)
Query: 66 GVFSETEAPGSSTHVGA-------GNSSDPATSRLGGSRG----PHPTLPPGP---AGSL 111
GV E+ +PG + G G + G+RG P P PPGP AG
Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 296
Query: 112 VFPERRGSL-----------QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAA 160
FP G+ + G PG P SP + + G GA+G GA
Sbjct: 297 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAP 356
Query: 161 ALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRG----A 216
+ P PG RG PPG P Q G PG+ GP+G A
Sbjct: 357 GIAGAP------GFPGPRG--PPGPQGATGPLGPKGQTG-EPGIAGFKGEQGPKGEPGPA 407
Query: 217 GVTGA-GPATQGGRDRGR 233
G GA GPA + G+ R
Sbjct: 408 GPQGAPGPAGEEGKRGAR 425
Score = 46.2 bits (108), Expect = 4e-05
Identities = 65/215 (30%), Positives = 72/215 (33%), Gaps = 43/215 (20%)
Query: 46 PGPERRGPRP-----PQTIPTLFLAGVFSETEAPGSSTHVGA-------GNSSDPATSRL 93
PGP G +P P L G E PG GA G P T
Sbjct: 602 PGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGP 661
Query: 94 GGSRGPH-PTLPPGPAGSLVFPERRGSLQ------DR--LGRASRPGCPPSPRGSRQERG 144
G+ GP P GP G P RG+ DR +G G P G
Sbjct: 662 KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP 721
Query: 145 ANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARG-TDPPGRTLPAPLARP---STQPGR 200
PG +GA G G + R PG RG T PPG PA A P QPG
Sbjct: 722 IGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPG---PAGFAGPPGADGQPGA 778
Query: 201 RPGLGRAAS--------PLGPRGA-------GVTG 220
+ G A P GP GA GVTG
Sbjct: 779 KGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTG 813
Score = 45.8 bits (107), Expect = 5e-05
Identities = 82/295 (27%), Positives = 97/295 (32%), Gaps = 72/295 (24%)
Query: 3 GVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNP--LPGPERRGPRPPQTIP 60
GVGP G P + A RG L G+P +R P L GP+ P +
Sbjct: 430 GVGPIGPPGE-----RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 484
Query: 61 TLFLAGVFSETEAPGSSTHVG-AGNSSDPATSRLGGSRGPHPTLP-------PGPAGSLV 112
L G T PG + G G S P G GP PGP G+
Sbjct: 485 P-GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANG 543
Query: 113 FPERRGSL--------------QDRLGRASRPGCPPSPRGSRQERGA------------- 145
P + G G A PG P P G R E+GA
Sbjct: 544 EPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG-PAGPAGERGEQGAPGPSGFQGLPGPP 602
Query: 146 ------NSPGRSGARGCGGAAALQQEPTNFRGRP----RPGARGTD-------PPGRTLP 188
PG G G GA L P RG P PGA+G PG P
Sbjct: 603 GPPGEGGKPGDQGVPGEAGAPGL-VGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGP 661
Query: 189 APLARPSTQPGRR--------PGLGRAASPLGPRG--AGVTGAGPATQGGRDRGR 233
+ P+ PG + PG AA GP+G V GP G+D GR
Sbjct: 662 KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGR 716
Score = 40.4 bits (93), Expect = 0.002
Identities = 58/199 (29%), Positives = 71/199 (35%), Gaps = 48/199 (24%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPA-TSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDR 123
AG + APG GA P + G+RG GP G+ FP G +
Sbjct: 785 AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ-----GPPGATGFPGAAGRVGPP 839
Query: 124 LGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARG---- 179
G PG PP P G + G GARG G EP PG +G
Sbjct: 840 -GSNGNPG-PPGPPGP-----SGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD 892
Query: 180 ------TDPPG-------------------RTLPAPLARPSTQPGRR--PGLGRAASPLG 212
PPG R P L PS +PG++ PG P G
Sbjct: 893 DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG-LPGPSGEPGKQGAPGASGDRGPPG 951
Query: 213 PRG-AGVTGAGPATQGGRD 230
P G G+T GPA + GR+
Sbjct: 952 PVGPPGLT--GPAGEPGRE 968
Score = 39.3 bits (90), Expect = 0.005
Identities = 40/131 (30%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSP-GRSGARGCGGAAALQ 163
PGP G P G ++D +G P PP P+G E+G G G +G G
Sbjct: 31 PGPKGQKGEP---GDIKDIVG----PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRD 83
Query: 164 QEPTNFRGRPRPGARGTDPP---GRTLPAPLARPSTQPGRRPGLGRAASPLGPRG----A 216
EP PG G P G A +A + LG P+GP G
Sbjct: 84 GEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPP 143
Query: 217 GVTGAGPATQG 227
G GA P QG
Sbjct: 144 GPAGA-PGPQG 153
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 59.3 bits (142), Expect = 5e-09
Identities = 80/271 (29%), Positives = 97/271 (35%), Gaps = 46/271 (16%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFL 64
GPRG+P A+ A+ RG L G+ D P G P +P +
Sbjct: 1180 GPRGNPG-----AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAII 1234
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
G PGS GA P S + G +G P P PPG AG + P
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPP--- 1291
Query: 118 GSLQDRLGRASRPGCP--PSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRP 175
GR PG P P PRG +G PG G +G G P + P
Sbjct: 1292 -------GRLGAPGTPGLPGPRGDPGFQG--FPGVKGEKGNPGFLGSIGPPGPIGPKGPP 1342
Query: 176 GARGTDPPGR----TLPAPLARPST--QPGRR-----PGLGRAASPLGPRGAGVTGAGPA 224
G RG PG +LP P T +PG + PG P GPRG P
Sbjct: 1343 GVRG--DPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPG 1400
Query: 225 TQGGRDRGRWGRWVRRRVPCP-----LPGLR 250
T G G G + P P LPGL+
Sbjct: 1401 TPG--PAGEKGNKGSKGEPGPAGSDGLPGLK 1429
Score = 51.6 bits (122), Expect = 1e-06
Identities = 72/223 (32%), Positives = 85/223 (38%), Gaps = 35/223 (15%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
P+PGP GP P P G PGS G DP G G P +
Sbjct: 653 PVPGPP--GPPGPPGHP-----GPQGPPGIPGS-----LGKCGDPGLPGPDGEPGI-PGI 699
Query: 104 ----PPGPAGSLVFPERRGSL--QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCG 157
PPGP G FP +GSL ++G PG P P G++ E PG G G
Sbjct: 700 GFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLP-GAKGEPAVAMPGGPGTPGFP 758
Query: 158 GAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPST--QPGRRPGLGRAASPLGPRG 215
G E PG GT P L P P PG + GR GPRG
Sbjct: 759 GERGNSGEHGEIGLPGLPGLPGT-PGNEGLDGPRGDPGQPGPPGEQGPPGRCIE--GPRG 815
Query: 216 A-GVTGA-GPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAG 256
A G+ G G Q GR RG+ G P PG+ +R+G
Sbjct: 816 AQGLPGLNGLKGQQGR-RGKTG-------PKGDPGIPGLDRSG 850
Score = 44.7 bits (104), Expect = 1e-04
Identities = 73/271 (26%), Positives = 92/271 (33%), Gaps = 58/271 (21%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERR----GPRPPQTIP 60
GPRG P + GR + R + G N L G + R GP+ IP
Sbjct: 789 GPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIP 844
Query: 61 TLFLAGVFSETEAPGSSTHVGA----GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPER 116
L +G ET +PG H G G P + G G G G + FP
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGED-----GVIGMMGFP-- 897
Query: 117 RGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTN-------- 168
G PG P +P Q PG G RG GA Q + N
Sbjct: 898 --------GAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISH 949
Query: 169 ---FRGRP-------RPGARGT----DPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPR 214
+G P PG +G PG L P+ PG R LG +P P
Sbjct: 950 VIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPG 1009
Query: 215 GAGVTGA-----GPATQGGRDR----GRWGR 236
G+ G+ P ++G R GR GR
Sbjct: 1010 LRGIPGSMGNMGMPGSKGKRGTLGFPGRAGR 1040
Score = 43.5 bits (101), Expect = 3e-04
Identities = 47/154 (30%), Positives = 57/154 (37%), Gaps = 23/154 (14%)
Query: 78 THVGAGNSSDPATSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCP--P 134
T+ G+ P G+RGP P+ PPG GS GS R G PG P
Sbjct: 349 TYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGS------PGS--SRPGLRGAPGWPGLK 400
Query: 135 SPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGA----RGTDPPGRTLPAP 190
+G R G ++ G G+ GC G+ L P G P P R P LP
Sbjct: 401 GSKGERGRPGKDAMGTPGSPGCAGSPGLPGSP----GPPGPPGDIVFRKGPPGDHGLPGY 456
Query: 191 LARPSTQ----PGRRPGLGRAASPLGPRGAGVTG 220
L P P PGL P P G+ G
Sbjct: 457 LGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPG 490
Score = 43.5 bits (101), Expect = 3e-04
Identities = 59/198 (29%), Positives = 70/198 (35%), Gaps = 23/198 (11%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
GSP P GP GP+ L G APG G +T G
Sbjct: 605 GSPGPAGPA-GPPGYGPQGEPG-----LQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPP 658
Query: 97 RGPHPTLPPGPAGSLVFPERRGSLQD--RLGRASRPGCP----PSPRGSRQERGANSPGR 150
P P PGP G P G D G PG P P P G + ++G PG
Sbjct: 659 GPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQG--FPGT 716
Query: 151 SGARGCGGAAALQQEPTNFRGRP-RPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAAS 209
G+ GC G EP G+P PGA+G P +P P PG R G
Sbjct: 717 KGSLGCPGKMG---EP-GLPGKPGLPGAKG--EPAVAMPGGPGTPGF-PGERGNSGEHGE 769
Query: 210 PLGPRGAGVTGAGPATQG 227
P G+ G P +G
Sbjct: 770 IGLPGLPGLPGT-PGNEG 786
Score = 42.0 bits (97), Expect = 8e-04
Identities = 58/195 (29%), Positives = 67/195 (34%), Gaps = 39/195 (20%)
Query: 47 GPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTL-P 104
G E+ P P L G + PG G GN P G +G + P
Sbjct: 284 GSEKGAPGDPG------LQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGP 337
Query: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSP---------GRSGARG 155
PG G P G PG PP PRG+R +G + P R G RG
Sbjct: 338 PGFRG----PTEYYDTYQEKGDEGTPG-PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRG 392
Query: 156 CGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPG--RRPGLGRAASPLGP 213
G L+ RGRP A GT PG PG PGL + P GP
Sbjct: 393 APGWPGLKGSKGE-RGRPGKDAMGT--PG------------SPGCAGSPGLPGSPGPPGP 437
Query: 214 RGAGVTGAGPATQGG 228
G V GP G
Sbjct: 438 PGDIVFRKGPPGDHG 452
Score = 37.4 bits (85), Expect = 0.019
Identities = 45/186 (24%), Positives = 56/186 (30%), Gaps = 37/186 (19%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
AG+ + AP + DP G +G P P PPGP G FP
Sbjct: 150 AGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 118 GSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGA 177
G P P+G ER G G +G G PG
Sbjct: 210 G--------------PRGPKGHMGERVIGHKGERGVKGLTGP---------------PGP 240
Query: 178 RGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRW 237
GT T P + G + +G P GP G G D G G+
Sbjct: 241 PGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPP-GPSGLPGESYGSEKGAPGDPGLQGKP 299
Query: 238 VRRRVP 243
+ VP
Sbjct: 300 GKDGVP 305
Score = 37.4 bits (85), Expect = 0.019
Identities = 43/162 (26%), Positives = 57/162 (35%), Gaps = 11/162 (6%)
Query: 64 LAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQD 122
L G+ PG G G+ P + L G G PG G +G
Sbjct: 491 LPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGF-----PGAQGDPGLKGEKGETLQ 545
Query: 123 RLGRASRPGCPPSPRGSRQERGAN----SPGRSGARGCGGAAALQQEPTNFRGRPRPGAR 178
G+ PG P RG +G + +PG G G G AL E + PG+
Sbjct: 546 PEGQVGVPG-DPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSP 604
Query: 179 GTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTG 220
G+ P P P +PG + G +P P AG G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRG 646
Score = 31.2 bits (69), Expect = 1.3
Identities = 42/165 (25%), Positives = 54/165 (32%), Gaps = 35/165 (21%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRG--------SLQDRLGRASRPGCPP 134
G P + G GP PGP G FP G + G + PG P
Sbjct: 52 GFPGPPGSPGQKGFTGPEGL--PGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPG 109
Query: 135 SPRGSRQERGANSPGRSGAR---------------GCGGAAAL--------QQEPTNFRG 171
+P + PG SG++ G GAA L ++E
Sbjct: 110 TPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDA 169
Query: 172 RPRPGARGTDPPGRTLPAPLARPS-TQPGRRPGLGRAASPLGPRG 215
+ PG G P + LP P P P PG +GPRG
Sbjct: 170 KGDPGLPGAPGP-QGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRG 213
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 59.3 bits (142), Expect = 5e-09
Identities = 80/271 (29%), Positives = 97/271 (35%), Gaps = 46/271 (16%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFL 64
GPRG+P A+ A+ RG L G+ D P G P +P +
Sbjct: 1180 GPRGNPG-----AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAII 1234
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
G PGS GA P S + G +G P P PPG AG + P
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPP--- 1291
Query: 118 GSLQDRLGRASRPGCP--PSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRP 175
GR PG P P PRG +G PG G +G G P + P
Sbjct: 1292 -------GRLGAPGTPGLPGPRGDPGFQG--FPGVKGEKGNPGFLGSIGPPGPIGPKGPP 1342
Query: 176 GARGTDPPGR----TLPAPLARPST--QPGRR-----PGLGRAASPLGPRGAGVTGAGPA 224
G RG PG +LP P T +PG + PG P GPRG P
Sbjct: 1343 GVRG--DPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPG 1400
Query: 225 TQGGRDRGRWGRWVRRRVPCP-----LPGLR 250
T G G G + P P LPGL+
Sbjct: 1401 TPG--PAGEKGNKGSKGEPGPAGSDGLPGLK 1429
Score = 51.6 bits (122), Expect = 1e-06
Identities = 72/223 (32%), Positives = 85/223 (38%), Gaps = 35/223 (15%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
P+PGP GP P P G PGS G DP G G P +
Sbjct: 653 PVPGPP--GPPGPPGHP-----GPQGPPGIPGS-----LGKCGDPGLPGPDGEPGI-PGI 699
Query: 104 ----PPGPAGSLVFPERRGSL--QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCG 157
PPGP G FP +GSL ++G PG P P G++ E PG G G
Sbjct: 700 GFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLP-GAKGEPAVAMPGGPGTPGFP 758
Query: 158 GAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPST--QPGRRPGLGRAASPLGPRG 215
G E PG GT P L P P PG + GR GPRG
Sbjct: 759 GERGNSGEHGEIGLPGLPGLPGT-PGNEGLDGPRGDPGQPGPPGEQGPPGRCIE--GPRG 815
Query: 216 A-GVTGA-GPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAG 256
A G+ G G Q GR RG+ G P PG+ +R+G
Sbjct: 816 AQGLPGLNGLKGQQGR-RGKTG-------PKGDPGIPGLDRSG 850
Score = 44.7 bits (104), Expect = 1e-04
Identities = 73/271 (26%), Positives = 92/271 (33%), Gaps = 58/271 (21%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERR----GPRPPQTIP 60
GPRG P + GR + R + G N L G + R GP+ IP
Sbjct: 789 GPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIP 844
Query: 61 TLFLAGVFSETEAPGSSTHVGA----GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPER 116
L +G ET +PG H G G P + G G G G + FP
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGED-----GVIGMMGFP-- 897
Query: 117 RGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTN-------- 168
G PG P +P Q PG G RG GA Q + N
Sbjct: 898 --------GAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISH 949
Query: 169 ---FRGRP-------RPGARGT----DPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPR 214
+G P PG +G PG L P+ PG R LG +P P
Sbjct: 950 VIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPG 1009
Query: 215 GAGVTGA-----GPATQGGRDR----GRWGR 236
G+ G+ P ++G R GR GR
Sbjct: 1010 LRGIPGSMGNMGMPGSKGKRGTLGFPGRAGR 1040
Score = 43.5 bits (101), Expect = 3e-04
Identities = 47/154 (30%), Positives = 57/154 (37%), Gaps = 23/154 (14%)
Query: 78 THVGAGNSSDPATSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCP--P 134
T+ G+ P G+RGP P+ PPG GS GS R G PG P
Sbjct: 349 TYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGS------PGS--SRPGLRGAPGWPGLK 400
Query: 135 SPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGA----RGTDPPGRTLPAP 190
+G R G ++ G G+ GC G+ L P G P P R P LP
Sbjct: 401 GSKGERGRPGKDAMGTPGSPGCAGSPGLPGSP----GPPGPPGDIVFRKGPPGDHGLPGY 456
Query: 191 LARPSTQ----PGRRPGLGRAASPLGPRGAGVTG 220
L P P PGL P P G+ G
Sbjct: 457 LGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPG 490
Score = 43.5 bits (101), Expect = 3e-04
Identities = 59/198 (29%), Positives = 70/198 (35%), Gaps = 23/198 (11%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
GSP P GP GP+ L G APG G +T G
Sbjct: 605 GSPGPAGPA-GPPGYGPQGEPG-----LQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPP 658
Query: 97 RGPHPTLPPGPAGSLVFPERRGSLQD--RLGRASRPGCP----PSPRGSRQERGANSPGR 150
P P PGP G P G D G PG P P P G + ++G PG
Sbjct: 659 GPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQG--FPGT 716
Query: 151 SGARGCGGAAALQQEPTNFRGRP-RPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAAS 209
G+ GC G EP G+P PGA+G P +P P PG R G
Sbjct: 717 KGSLGCPGKMG---EP-GLPGKPGLPGAKG--EPAVAMPGGPGTPGF-PGERGNSGEHGE 769
Query: 210 PLGPRGAGVTGAGPATQG 227
P G+ G P +G
Sbjct: 770 IGLPGLPGLPGT-PGNEG 786
Score = 42.0 bits (97), Expect = 8e-04
Identities = 58/195 (29%), Positives = 67/195 (34%), Gaps = 39/195 (20%)
Query: 47 GPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTL-P 104
G E+ P P L G + PG G GN P G +G + P
Sbjct: 284 GSEKGAPGDPG------LQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGP 337
Query: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSP---------GRSGARG 155
PG G P G PG PP PRG+R +G + P R G RG
Sbjct: 338 PGFRG----PTEYYDTYQEKGDEGTPG-PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRG 392
Query: 156 CGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPG--RRPGLGRAASPLGP 213
G L+ RGRP A GT PG PG PGL + P GP
Sbjct: 393 APGWPGLKGSKGE-RGRPGKDAMGT--PG------------SPGCAGSPGLPGSPGPPGP 437
Query: 214 RGAGVTGAGPATQGG 228
G V GP G
Sbjct: 438 PGDIVFRKGPPGDHG 452
Score = 37.4 bits (85), Expect = 0.019
Identities = 45/186 (24%), Positives = 56/186 (30%), Gaps = 37/186 (19%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
AG+ + AP + DP G +G P P PPGP G FP
Sbjct: 150 AGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 118 GSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGA 177
G P P+G ER G G +G G PG
Sbjct: 210 G--------------PRGPKGHMGERVIGHKGERGVKGLTGP---------------PGP 240
Query: 178 RGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRW 237
GT T P + G + +G P GP G G D G G+
Sbjct: 241 PGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPP-GPSGLPGESYGSEKGAPGDPGLQGKP 299
Query: 238 VRRRVP 243
+ VP
Sbjct: 300 GKDGVP 305
Score = 37.4 bits (85), Expect = 0.019
Identities = 43/162 (26%), Positives = 57/162 (35%), Gaps = 11/162 (6%)
Query: 64 LAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQD 122
L G+ PG G G+ P + L G G PG G +G
Sbjct: 491 LPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGF-----PGAQGDPGLKGEKGETLQ 545
Query: 123 RLGRASRPGCPPSPRGSRQERGAN----SPGRSGARGCGGAAALQQEPTNFRGRPRPGAR 178
G+ PG P RG +G + +PG G G G AL E + PG+
Sbjct: 546 PEGQVGVPG-DPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSP 604
Query: 179 GTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTG 220
G+ P P P +PG + G +P P AG G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRG 646
Score = 31.2 bits (69), Expect = 1.3
Identities = 42/165 (25%), Positives = 54/165 (32%), Gaps = 35/165 (21%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRG--------SLQDRLGRASRPGCPP 134
G P + G GP PGP G FP G + G + PG P
Sbjct: 52 GFPGPPGSPGQKGFTGPEGL--PGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPG 109
Query: 135 SPRGSRQERGANSPGRSGAR---------------GCGGAAAL--------QQEPTNFRG 171
+P + PG SG++ G GAA L ++E
Sbjct: 110 TPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDA 169
Query: 172 RPRPGARGTDPPGRTLPAPLARPS-TQPGRRPGLGRAASPLGPRG 215
+ PG G P + LP P P P PG +GPRG
Sbjct: 170 KGDPGLPGAPGP-QGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRG 213
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 59.3 bits (142), Expect = 5e-09
Identities = 80/271 (29%), Positives = 97/271 (35%), Gaps = 46/271 (16%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFL 64
GPRG+P A+ A+ RG L G+ D P G P +P +
Sbjct: 1180 GPRGNPG-----AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAII 1234
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
G PGS GA P S + G +G P P PPG AG + P
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPP--- 1291
Query: 118 GSLQDRLGRASRPGCP--PSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRP 175
GR PG P P PRG +G PG G +G G P + P
Sbjct: 1292 -------GRLGAPGTPGLPGPRGDPGFQG--FPGVKGEKGNPGFLGSIGPPGPIGPKGPP 1342
Query: 176 GARGTDPPGR----TLPAPLARPST--QPGRR-----PGLGRAASPLGPRGAGVTGAGPA 224
G RG PG +LP P T +PG + PG P GPRG P
Sbjct: 1343 GVRG--DPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPG 1400
Query: 225 TQGGRDRGRWGRWVRRRVPCP-----LPGLR 250
T G G G + P P LPGL+
Sbjct: 1401 TPG--PAGEKGNKGSKGEPGPAGSDGLPGLK 1429
Score = 51.6 bits (122), Expect = 1e-06
Identities = 72/223 (32%), Positives = 85/223 (38%), Gaps = 35/223 (15%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
P+PGP GP P P G PGS G DP G G P +
Sbjct: 653 PVPGPP--GPPGPPGHP-----GPQGPPGIPGS-----LGKCGDPGLPGPDGEPGI-PGI 699
Query: 104 ----PPGPAGSLVFPERRGSL--QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCG 157
PPGP G FP +GSL ++G PG P P G++ E PG G G
Sbjct: 700 GFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLP-GAKGEPAVAMPGGPGTPGFP 758
Query: 158 GAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPST--QPGRRPGLGRAASPLGPRG 215
G E PG GT P L P P PG + GR GPRG
Sbjct: 759 GERGNSGEHGEIGLPGLPGLPGT-PGNEGLDGPRGDPGQPGPPGEQGPPGRCIE--GPRG 815
Query: 216 A-GVTGA-GPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAG 256
A G+ G G Q GR RG+ G P PG+ +R+G
Sbjct: 816 AQGLPGLNGLKGQQGR-RGKTG-------PKGDPGIPGLDRSG 850
Score = 44.7 bits (104), Expect = 1e-04
Identities = 73/271 (26%), Positives = 92/271 (33%), Gaps = 58/271 (21%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERR----GPRPPQTIP 60
GPRG P + GR + R + G N L G + R GP+ IP
Sbjct: 789 GPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIP 844
Query: 61 TLFLAGVFSETEAPGSSTHVGA----GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPER 116
L +G ET +PG H G G P + G G G G + FP
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGED-----GVIGMMGFP-- 897
Query: 117 RGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTN-------- 168
G PG P +P Q PG G RG GA Q + N
Sbjct: 898 --------GAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISH 949
Query: 169 ---FRGRP-------RPGARGT----DPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPR 214
+G P PG +G PG L P+ PG R LG +P P
Sbjct: 950 VIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPG 1009
Query: 215 GAGVTGA-----GPATQGGRDR----GRWGR 236
G+ G+ P ++G R GR GR
Sbjct: 1010 LRGIPGSMGNMGMPGSKGKRGTLGFPGRAGR 1040
Score = 43.5 bits (101), Expect = 3e-04
Identities = 47/154 (30%), Positives = 57/154 (37%), Gaps = 23/154 (14%)
Query: 78 THVGAGNSSDPATSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCP--P 134
T+ G+ P G+RGP P+ PPG GS GS R G PG P
Sbjct: 349 TYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGS------PGS--SRPGLRGAPGWPGLK 400
Query: 135 SPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGA----RGTDPPGRTLPAP 190
+G R G ++ G G+ GC G+ L P G P P R P LP
Sbjct: 401 GSKGERGRPGKDAMGTPGSPGCAGSPGLPGSP----GPPGPPGDIVFRKGPPGDHGLPGY 456
Query: 191 LARPSTQ----PGRRPGLGRAASPLGPRGAGVTG 220
L P P PGL P P G+ G
Sbjct: 457 LGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPG 490
Score = 43.5 bits (101), Expect = 3e-04
Identities = 59/198 (29%), Positives = 70/198 (35%), Gaps = 23/198 (11%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
GSP P GP GP+ L G APG G +T G
Sbjct: 605 GSPGPAGPA-GPPGYGPQGEPG-----LQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPP 658
Query: 97 RGPHPTLPPGPAGSLVFPERRGSLQD--RLGRASRPGCP----PSPRGSRQERGANSPGR 150
P P PGP G P G D G PG P P P G + ++G PG
Sbjct: 659 GPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQG--FPGT 716
Query: 151 SGARGCGGAAALQQEPTNFRGRP-RPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAAS 209
G+ GC G EP G+P PGA+G P +P P PG R G
Sbjct: 717 KGSLGCPGKMG---EP-GLPGKPGLPGAKG--EPAVAMPGGPGTPGF-PGERGNSGEHGE 769
Query: 210 PLGPRGAGVTGAGPATQG 227
P G+ G P +G
Sbjct: 770 IGLPGLPGLPGT-PGNEG 786
Score = 42.0 bits (97), Expect = 8e-04
Identities = 58/195 (29%), Positives = 67/195 (34%), Gaps = 39/195 (20%)
Query: 47 GPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTL-P 104
G E+ P P L G + PG G GN P G +G + P
Sbjct: 284 GSEKGAPGDPG------LQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGP 337
Query: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSP---------GRSGARG 155
PG G P G PG PP PRG+R +G + P R G RG
Sbjct: 338 PGFRG----PTEYYDTYQEKGDEGTPG-PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRG 392
Query: 156 CGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPG--RRPGLGRAASPLGP 213
G L+ RGRP A GT PG PG PGL + P GP
Sbjct: 393 APGWPGLKGSKGE-RGRPGKDAMGT--PG------------SPGCAGSPGLPGSPGPPGP 437
Query: 214 RGAGVTGAGPATQGG 228
G V GP G
Sbjct: 438 PGDIVFRKGPPGDHG 452
Score = 37.4 bits (85), Expect = 0.019
Identities = 45/186 (24%), Positives = 56/186 (30%), Gaps = 37/186 (19%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
AG+ + AP + DP G +G P P PPGP G FP
Sbjct: 150 AGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 118 GSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGA 177
G P P+G ER G G +G G PG
Sbjct: 210 G--------------PRGPKGHMGERVIGHKGERGVKGLTGP---------------PGP 240
Query: 178 RGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRW 237
GT T P + G + +G P GP G G D G G+
Sbjct: 241 PGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPP-GPSGLPGESYGSEKGAPGDPGLQGKP 299
Query: 238 VRRRVP 243
+ VP
Sbjct: 300 GKDGVP 305
Score = 37.4 bits (85), Expect = 0.019
Identities = 43/162 (26%), Positives = 57/162 (35%), Gaps = 11/162 (6%)
Query: 64 LAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQD 122
L G+ PG G G+ P + L G G PG G +G
Sbjct: 491 LPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGF-----PGAQGDPGLKGEKGETLQ 545
Query: 123 RLGRASRPGCPPSPRGSRQERGAN----SPGRSGARGCGGAAALQQEPTNFRGRPRPGAR 178
G+ PG P RG +G + +PG G G G AL E + PG+
Sbjct: 546 PEGQVGVPG-DPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSP 604
Query: 179 GTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTG 220
G+ P P P +PG + G +P P AG G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRG 646
Score = 31.2 bits (69), Expect = 1.3
Identities = 42/165 (25%), Positives = 54/165 (32%), Gaps = 35/165 (21%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRG--------SLQDRLGRASRPGCPP 134
G P + G GP PGP G FP G + G + PG P
Sbjct: 52 GFPGPPGSPGQKGFTGPEGL--PGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPG 109
Query: 135 SPRGSRQERGANSPGRSGAR---------------GCGGAAAL--------QQEPTNFRG 171
+P + PG SG++ G GAA L ++E
Sbjct: 110 TPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDA 169
Query: 172 RPRPGARGTDPPGRTLPAPLARPS-TQPGRRPGLGRAASPLGPRG 215
+ PG G P + LP P P P PG +GPRG
Sbjct: 170 KGDPGLPGAPGP-QGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRG 213
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 58.5 bits (140), Expect = 8e-09
Identities = 72/239 (30%), Positives = 89/239 (37%), Gaps = 35/239 (14%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFL 64
GPRG+P A+ A+ RG L G+ D P G P +P +
Sbjct: 1180 GPRGNPG-----AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAII 1234
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
G PGS GA P S + G +G P P PPG AG + P
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPP--- 1291
Query: 118 GSLQDRLGRASRPGCP--PSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRP 175
GR PG P P PRG +G PG G +G G P + P
Sbjct: 1292 -------GRLGAPGTPGLPGPRGDPGFQG--FPGVKGEKGNPGFLGSIGPPGPIGPKGPP 1342
Query: 176 GARGTDPPGR----TLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRD 230
G RG PG +LP P T PG PG+ P GP G + GP + G+D
Sbjct: 1343 GVRG--DPGTLKIISLPGSPGPPGT-PG-EPGMQGEPGPPGPPG-NLGPCGPRGKPGKD 1396
Score = 51.6 bits (122), Expect = 1e-06
Identities = 72/223 (32%), Positives = 85/223 (38%), Gaps = 35/223 (15%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
P+PGP GP P P G PGS G DP G G P +
Sbjct: 653 PVPGPP--GPPGPPGHP-----GPQGPPGIPGS-----LGKCGDPGLPGPDGEPGI-PGI 699
Query: 104 ----PPGPAGSLVFPERRGSL--QDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCG 157
PPGP G FP +GSL ++G PG P P G++ E PG G G
Sbjct: 700 GFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLP-GAKGEPAVAMPGGPGTPGFP 758
Query: 158 GAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPST--QPGRRPGLGRAASPLGPRG 215
G E PG GT P L P P PG + GR GPRG
Sbjct: 759 GERGNSGEHGEIGLPGLPGLPGT-PGNEGLDGPRGDPGQPGPPGEQGPPGRCIE--GPRG 815
Query: 216 A-GVTGA-GPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAG 256
A G+ G G Q GR RG+ G P PG+ +R+G
Sbjct: 816 AQGLPGLNGLKGQQGR-RGKTG-------PKGDPGIPGLDRSG 850
Score = 44.7 bits (104), Expect = 1e-04
Identities = 73/271 (26%), Positives = 92/271 (33%), Gaps = 58/271 (21%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERR----GPRPPQTIP 60
GPRG P + GR + R + G N L G + R GP+ IP
Sbjct: 789 GPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIP 844
Query: 61 TLFLAGVFSETEAPGSSTHVGA----GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPER 116
L +G ET +PG H G G P + G G G G + FP
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGED-----GVIGMMGFP-- 897
Query: 117 RGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTN-------- 168
G PG P +P Q PG G RG GA Q + N
Sbjct: 898 --------GAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISH 949
Query: 169 ---FRGRP-------RPGARGT----DPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPR 214
+G P PG +G PG L P+ PG R LG +P P
Sbjct: 950 VIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPG 1009
Query: 215 GAGVTGA-----GPATQGGRDR----GRWGR 236
G+ G+ P ++G R GR GR
Sbjct: 1010 LRGIPGSMGNMGMPGSKGKRGTLGFPGRAGR 1040
Score = 43.5 bits (101), Expect = 3e-04
Identities = 47/154 (30%), Positives = 57/154 (37%), Gaps = 23/154 (14%)
Query: 78 THVGAGNSSDPATSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCP--P 134
T+ G+ P G+RGP P+ PPG GS GS R G PG P
Sbjct: 349 TYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGS------PGS--SRPGLRGAPGWPGLK 400
Query: 135 SPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGA----RGTDPPGRTLPAP 190
+G R G ++ G G+ GC G+ L P G P P R P LP
Sbjct: 401 GSKGERGRPGKDAMGTPGSPGCAGSPGLPGSP----GPPGPPGDIVFRKGPPGDHGLPGY 456
Query: 191 LARPSTQ----PGRRPGLGRAASPLGPRGAGVTG 220
L P P PGL P P G+ G
Sbjct: 457 LGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPG 490
Score = 43.5 bits (101), Expect = 3e-04
Identities = 59/198 (29%), Positives = 70/198 (35%), Gaps = 23/198 (11%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
GSP P GP GP+ L G APG G +T G
Sbjct: 605 GSPGPAGPA-GPPGYGPQGEPG-----LQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPP 658
Query: 97 RGPHPTLPPGPAGSLVFPERRGSLQD--RLGRASRPGCP----PSPRGSRQERGANSPGR 150
P P PGP G P G D G PG P P P G + ++G PG
Sbjct: 659 GPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQG--FPGT 716
Query: 151 SGARGCGGAAALQQEPTNFRGRP-RPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAAS 209
G+ GC G EP G+P PGA+G P +P P PG R G
Sbjct: 717 KGSLGCPGKMG---EP-GLPGKPGLPGAKG--EPAVAMPGGPGTPGF-PGERGNSGEHGE 769
Query: 210 PLGPRGAGVTGAGPATQG 227
P G+ G P +G
Sbjct: 770 IGLPGLPGLPGT-PGNEG 786
Score = 42.0 bits (97), Expect = 8e-04
Identities = 58/195 (29%), Positives = 67/195 (34%), Gaps = 39/195 (20%)
Query: 47 GPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTL-P 104
G E+ P P L G + PG G GN P G +G + P
Sbjct: 284 GSEKGAPGDPG------LQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGP 337
Query: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSP---------GRSGARG 155
PG G P G PG PP PRG+R +G + P R G RG
Sbjct: 338 PGFRG----PTEYYDTYQEKGDEGTPG-PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRG 392
Query: 156 CGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPG--RRPGLGRAASPLGP 213
G L+ RGRP A GT PG PG PGL + P GP
Sbjct: 393 APGWPGLKGSKGE-RGRPGKDAMGT--PG------------SPGCAGSPGLPGSPGPPGP 437
Query: 214 RGAGVTGAGPATQGG 228
G V GP G
Sbjct: 438 PGDIVFRKGPPGDHG 452
Score = 37.4 bits (85), Expect = 0.019
Identities = 45/186 (24%), Positives = 56/186 (30%), Gaps = 37/186 (19%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
AG+ + AP + DP G +G P P PPGP G FP
Sbjct: 150 AGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 118 GSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGA 177
G P P+G ER G G +G G PG
Sbjct: 210 G--------------PRGPKGHMGERVIGHKGERGVKGLTGP---------------PGP 240
Query: 178 RGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRW 237
GT T P + G + +G P GP G G D G G+
Sbjct: 241 PGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPP-GPSGLPGESYGSEKGAPGDPGLQGKP 299
Query: 238 VRRRVP 243
+ VP
Sbjct: 300 GKDGVP 305
Score = 37.4 bits (85), Expect = 0.019
Identities = 43/162 (26%), Positives = 57/162 (35%), Gaps = 11/162 (6%)
Query: 64 LAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQD 122
L G+ PG G G+ P + L G G PG G +G
Sbjct: 491 LPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGF-----PGAQGDPGLKGEKGETLQ 545
Query: 123 RLGRASRPGCPPSPRGSRQERGAN----SPGRSGARGCGGAAALQQEPTNFRGRPRPGAR 178
G+ PG P RG +G + +PG G G G AL E + PG+
Sbjct: 546 PEGQVGVPG-DPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSP 604
Query: 179 GTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTG 220
G+ P P P +PG + G +P P AG G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRG 646
Score = 31.2 bits (69), Expect = 1.3
Identities = 42/165 (25%), Positives = 54/165 (32%), Gaps = 35/165 (21%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRG--------SLQDRLGRASRPGCPP 134
G P + G GP PGP G FP G + G + PG P
Sbjct: 52 GFPGPPGSPGQKGFTGPEGL--PGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPG 109
Query: 135 SPRGSRQERGANSPGRSGAR---------------GCGGAAAL--------QQEPTNFRG 171
+P + PG SG++ G GAA L ++E
Sbjct: 110 TPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDA 169
Query: 172 RPRPGARGTDPPGRTLPAPLARPS-TQPGRRPGLGRAASPLGPRG 215
+ PG G P + LP P P P PG +GPRG
Sbjct: 170 KGDPGLPGAPGP-QGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRG 213
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 57.4 bits (137), Expect = 2e-08
Identities = 75/225 (33%), Positives = 86/225 (38%), Gaps = 47/225 (20%)
Query: 45 LPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLP 104
LPGP R P P G+ E GS +GN +P GS GP P
Sbjct: 323 LPGP-RGIPGPVGAAGATGARGLVGEPGPAGSKGE--SGNKGEP------GSAGPQG--P 371
Query: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERG-------ANSPGRSGARGCG 157
PGP+G E + G A PG PP RGS RG A G G+RG
Sbjct: 372 PGPSGE----EGKRGPNGEAGSAGPPG-PPGLRGSPGSRGLPGADGRAGVMGPPGSRGAS 426
Query: 158 GAAALQQEPTNFRGRP-RPGARGT----DPPGRTLPAPLARPSTQPG--RRPGLGRAASP 210
G A ++ P GRP PG G PG PA P PG RPG P
Sbjct: 427 GPAGVRG-PNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPG------P 479
Query: 211 LGPRGA-------GVTG-AGPATQGGR--DRGRWGRWVRRRVPCP 245
+GP GA G G GP G+ D+G G R P P
Sbjct: 480 IGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGP 524
Score = 53.1 bits (126), Expect = 3e-07
Identities = 75/227 (33%), Positives = 86/227 (37%), Gaps = 47/227 (20%)
Query: 73 APGSSTHVG-AGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDR-----LGR 126
APG G AG +P + G+RGP PPG AG P + G +R G
Sbjct: 107 APGPQGFQGPAGEPGEPGQTGPAGARGPAG--PPGKAGEDGHPGKPGRPGERGVVGPQGA 164
Query: 127 ASRPGCPPSP--RGSRQERGAN----------------SPGRSGARGCGGAAALQQEPTN 168
PG P P +G R G + +PG +G G GA L E
Sbjct: 165 RGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGR 224
Query: 169 FRGRPRP-GARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQG 227
G P P GARG+D G P A P G PG A P G GA V AGPA
Sbjct: 225 V-GAPGPAGARGSD--GSVGPVGPAGPIGSAG-PPGFPGAPGPKGEIGA-VGNAGPAGPA 279
Query: 228 GRDRGRWGRWVRRRVPCPLPGLR----PHERAGAALLATCRGNAPTP 270
G RG G LPGL P GA L +G A P
Sbjct: 280 G-PRGEVG----------LPGLSGPVGPPGNPGANGLTGAKGAAGLP 315
Score = 52.0 bits (123), Expect = 7e-07
Identities = 63/186 (33%), Positives = 73/186 (39%), Gaps = 40/186 (21%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRL 124
AG E PG S GA + P GSRGP PPGP G+ P G++
Sbjct: 585 AGPRGERGPPGES---GAAGPTGPI-----GSRGPSG--PPGPDGNKGEPGVVGAV-GTA 633
Query: 125 GRASRPGCP--------PSPRGSRQERGAN----SPGRSGARGCGGAAALQQEPTNFRGR 172
G + G P P +G + E G +PGR GARG GA G
Sbjct: 634 GPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAV----------GA 683
Query: 173 PRP-GARG-TDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRG-AGVTGAGPATQGGR 229
P P GA G G PA A P PG R +G P GP G AG GA
Sbjct: 684 PGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVG----PAGPNGFAGPAGAAGQPGAKG 739
Query: 230 DRGRWG 235
+RG G
Sbjct: 740 ERGAKG 745
Score = 48.5 bits (114), Expect = 8e-06
Identities = 53/159 (33%), Positives = 67/159 (42%), Gaps = 16/159 (10%)
Query: 73 APGSSTHVGAGNSSDPATSRLGGSRG----PHPTLPPGPAGSLVFPERRGSLQDRLGRAS 128
APG +GA ++ PA G RG P + P GP G+ P G L G A
Sbjct: 260 APGPKGEIGAVGNAGPAGP--AGPRGEVGLPGLSGPVGPPGN---PGANG-LTGAKGAAG 313
Query: 129 RPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLP 188
PG +P G RG PG GA G GA L EP + G +G PG P
Sbjct: 314 LPGVAGAP-GLPGPRGI--PGPVGAAGATGARGLVGEPGPAGSKGESGNKGE--PGSAGP 368
Query: 189 APLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQG 227
PS + G+R G A S P G+ G+ P ++G
Sbjct: 369 QGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGS-PGSRG 406
Score = 47.8 bits (112), Expect = 1e-05
Identities = 65/211 (30%), Positives = 78/211 (36%), Gaps = 28/211 (13%)
Query: 74 PGSSTHVGAGNSSDP----ATSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRAS 128
PG+ VGA + P + G+RG P+ P GPAG+ V P Q G
Sbjct: 951 PGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGA-VGPRGPSGPQGIRGDKG 1009
Query: 129 RPGCPPSPRGSRQERGANS----PGRSGARGCGGAAALQQEPTNFRGRPRP-GARGTDP- 182
PG PRG +G N PG +G G GA P RG P G G D
Sbjct: 1010 EPG-EKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPG-SVGPAGPRGPAGPSGPAGKDGR 1067
Query: 183 ---PGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGA-GVTGAGPATQGGRDRGRWGRWV 238
PG PA + P G P GP G G G + GG D G G +
Sbjct: 1068 TGHPGTVGPAGIRGPQGHQG----------PAGPPGPPGPPGPPGVSGGGYDFGYDGDFY 1117
Query: 239 RRRVPCPLPGLRPHERAGAALLATCRGNAPT 269
R P P LRP + A L + T
Sbjct: 1118 RADQPRSAPSLRPKDYEVDATLKSLNNQIET 1148
Score = 43.1 bits (100), Expect = 3e-04
Identities = 58/205 (28%), Positives = 75/205 (36%), Gaps = 23/205 (11%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRG-PHPTL 103
PGP+ P + + AG + PG G G + L G G P
Sbjct: 615 PGPDGNKGEPG-VVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDG 673
Query: 104 PPGPAGSLVFPERRGSLQDR-LGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAAL 162
G G++ P G+ DR A+ P P PRGS ERG P +G G G A
Sbjct: 674 ARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGP--AGPNGFAGPAGA 731
Query: 163 QQEPTNFRGRPRPGARG-------TDPPGRTLPAPLARPSTQPGRR--------PGLGRA 207
+P R G +G T P G PA P G R G A
Sbjct: 732 AGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGA 791
Query: 208 ASPLGPRG-AGVTG-AGPATQGGRD 230
A GP G +G++G GP G++
Sbjct: 792 AGRTGPPGPSGISGPPGPPGPAGKE 816
Score = 43.1 bits (100), Expect = 3e-04
Identities = 73/249 (29%), Positives = 83/249 (33%), Gaps = 64/249 (25%)
Query: 39 PLDRNPLPGPE----RRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRL 93
P N + GP GP P P AG + PG + GA G + P S +
Sbjct: 746 PKGENGVVGPTGPVGAAGPAGPNGPPGP--AGSRGDGGPPGMTGFPGAAGRTGPPGPSGI 803
Query: 94 GGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGC--------------------P 133
G GP PGPAG RG Q +GR G P
Sbjct: 804 SGPPGP-----PGPAGKEGLRGPRGD-QGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGP 857
Query: 134 PSPRGSRQERGANS----PGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRT--- 186
P G + GA PG G RG G A EP PGARG PPG
Sbjct: 858 PGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARG--PPGAVGSP 915
Query: 187 ----LPAPLARPSTQPGRRPGLGRAASP-----------LGPRG-AGVTG----AGPATQ 226
P R PG GR P +GP G AG G GPA +
Sbjct: 916 GVNGAPGEAGRDG-NPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGK 974
Query: 227 GGRDRGRWG 235
G +RG G
Sbjct: 975 HG-NRGETG 982
Score = 40.0 bits (92), Expect = 0.003
Identities = 43/137 (31%), Positives = 50/137 (36%), Gaps = 29/137 (21%)
Query: 95 GSRGPH----------PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERG 144
G RGP PT PPGP G P G+ + G P P G RG
Sbjct: 42 GERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYD-GKGVGLGPGPMGLMGPRG 100
Query: 145 ANSPGRSGARGCGGAAALQQEPTNFRGRP-RPGARGTDPPGRTLPAPLARPSTQPGRRPG 203
PG +GA G P F+G PG PG+T PA P+ PG+
Sbjct: 101 P--PGAAGAPG----------PQGFQGPAGEPGE-----PGQTGPAGARGPAGPPGKAGE 143
Query: 204 LGRAASPLGPRGAGVTG 220
G P P GV G
Sbjct: 144 DGHPGKPGRPGERGVVG 160
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 56.6 bits (135), Expect = 3e-08
Identities = 66/217 (30%), Positives = 76/217 (35%), Gaps = 64/217 (29%)
Query: 45 LPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLP 104
LPGP +G R P +P G+ + PG G + LGG P
Sbjct: 320 LPGP--KGDRGPAGVP-----GLLGDRGEPGED-----GEPGEQGPQGLGG--------P 359
Query: 105 PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQ 164
PG GS P RRG PP P+G G PG G RG G + L
Sbjct: 360 PGLPGSAGLPGRRG--------------PPGPKGEAGPGGP--PGVPGIRGDQGPSGLAG 403
Query: 165 EPTNFRGRPRPGARGTDPPGRT----LPAPLARPS-----------------TQPGRR-- 201
+P R PGA G PPG T P RP QPG R
Sbjct: 404 KPGVPGERGLPGAHG--PPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGP 461
Query: 202 ---PGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWG 235
PGL A P+GP+G P G GR G
Sbjct: 462 SGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAG 498
Score = 52.8 bits (125), Expect = 4e-07
Identities = 66/217 (30%), Positives = 78/217 (35%), Gaps = 35/217 (16%)
Query: 39 PLDRNPLPGPERR-GPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSR 97
P+D PGP + GPR P P G + H G + P SR+G +
Sbjct: 72 PMDLKGEPGPPGKPGPRGPPGPP-----GFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAG 126
Query: 98 GPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCG 157
P GP G P RG R + R PP P G G PG+ GA+G
Sbjct: 127 PPGLPGKVGPPGQ---PGLRGEPGIRGDQGLRG--PPGPPGLPGPSGITIPGKPGAQGVP 181
Query: 158 GAAALQQEP----------------TNFRGRP-RPGARG----TDPPGRTLPAPLARPST 196
G Q EP N G+P PGA G PPG PA L +P
Sbjct: 182 GPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGL 241
Query: 197 Q--PGRRPGLGRAASPLGPRGAGVTGA-GPATQGGRD 230
PG G + P P G GA GP G D
Sbjct: 242 DGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVD 278
Score = 43.1 bits (100), Expect = 3e-04
Identities = 51/161 (31%), Positives = 55/161 (34%), Gaps = 25/161 (15%)
Query: 99 PHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGG 158
P P PGP G G Q L A G P P G G PG G G G
Sbjct: 190 PGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPG 249
Query: 159 AAALQQEP--TNFRGRP-------RPGARGTDPPGRT-LPAPLARPSTQPGRRPGLGRAA 208
P RG P PG G PG LP P PS G PG
Sbjct: 250 DKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQG-PSGAKG-EPGTRGPP 307
Query: 209 SPLGPRGAGVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGL 249
+GP G G+ G P +G DRG P +PGL
Sbjct: 308 GLIGPTGYGMPGL-PGPKG--DRG----------PAGVPGL 335
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 56.2 bits (134), Expect = 4e-08
Identities = 61/191 (31%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 53 PRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-PHPTLPPGPAGSL 111
P PP T G T APG G +P + G +G P PPGP G
Sbjct: 1275 PGPPGTPGPKGSRGSLGPTGAPGRM-----GAQGEPGLAGYDGHKGIVGPLGPPGPKGE- 1328
Query: 112 VFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANS-------PGRSGARGCGGAAALQQ 164
+G Q G+A P PP RG +RG PG+ G +G G Q
Sbjct: 1329 -----KGE-QGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQG 1382
Query: 165 EPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGA----GVTG 220
+P + R PG +G+ G P + PGRR G P GPRG G+ G
Sbjct: 1383 QPGHPGPRGWPGPKGS--KGAEGPKGKQGKAGAPGRRGVQGLQGLP-GPRGVVGRQGLEG 1439
Query: 221 -AGPATQGGRD 230
AGP GRD
Sbjct: 1440 IAGPDGLPGRD 1450
Score = 41.6 bits (96), Expect = 0.001
Identities = 63/226 (27%), Positives = 78/226 (34%), Gaps = 64/226 (28%)
Query: 41 DRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA----GNSSDPATSRLGGS 96
D PL P +G L G E G S +G G+ DP G
Sbjct: 1169 DLGPLGTPGEQG-----------LIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGE 1217
Query: 97 RGPHPTL----PPGPAG--SLVFPERRGS---------------LQDRLGRASRPGCP-- 133
+G + PPGP G + PE + Q +LG PG P
Sbjct: 1218 KGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGP 1277
Query: 134 ---PSPRGSRQERG-ANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPA 189
P P+GSR G +PGR GA+G G A +G P PPG
Sbjct: 1278 PGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYD----GHKGIVGP----LGPPG----- 1324
Query: 190 PLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWG 235
P + G + G+A P GP G GP G DRG G
Sbjct: 1325 ----PKGEKGEQGEDGKAEGPPGPPG----DRGPVGDRG-DRGEPG 1361
Score = 40.4 bits (93), Expect = 0.002
Identities = 44/125 (35%), Positives = 51/125 (40%), Gaps = 19/125 (15%)
Query: 94 GGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSP-GRSG 152
GG P P GP GS P RG+ R R P P +GSR +G P GR G
Sbjct: 1036 GGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRG--PDGPAGEQGSRGLKGPPGPQGRPG 1093
Query: 153 ARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQ--PGRRPGLGRAASP 210
G G A R G+RG PG +P P P T+ PG PG P
Sbjct: 1094 RPGQQGVAG---------ERGHLGSRGF--PG--IPGPSGPPGTKGLPG-EPGPQGPQGP 1139
Query: 211 LGPRG 215
+GP G
Sbjct: 1140 IGPPG 1144
Score = 33.5 bits (75), Expect = 0.27
Identities = 61/202 (30%), Positives = 69/202 (34%), Gaps = 44/202 (21%)
Query: 45 LPG-PERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
LPG P RGPR P G + PG G DP S G +
Sbjct: 644 LPGIPGARGPRGPP--------GPYGNPGLPGPPG--AKGQKGDPGLSPGKAHDGAKGDM 693
Query: 104 P-PGPAGSLVFPERRGSLQDRLGRASRPG--CPPSPRGSRQERG----------ANSPGR 150
PG +G+ P R+G + G A PG P P GS +G PG
Sbjct: 694 GLPGLSGNPGPPGRKGH-KGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGP 752
Query: 151 SGARGCGGAAALQQEP--TNFRGRPR-PGARG-------------TDPPGRT-LPAPLAR 193
G+RG G L P RG P PG RG PPG P L
Sbjct: 753 KGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGL 812
Query: 194 PSTQPGRRPGLGRAASPLGPRG 215
P P PGL LGP G
Sbjct: 813 PG--PPGVPGLIGDLGVLGPIG 832
Score = 32.7 bits (73), Expect = 0.46
Identities = 41/169 (24%), Positives = 60/169 (35%), Gaps = 19/169 (11%)
Query: 48 PERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGP 107
P RGPR T S T P VG + ++L S P LP
Sbjct: 283 PAGRGPRGTVAPATPTKPQRTSPTN-PHQHMAVGGPAQTPLLPAKLSASNALDPMLPASV 341
Query: 108 AGSLVFPERRGSLQDRLGRASR-----PGCPPSPRGSRQERGANSPGRSGARGCGGAAAL 162
GS P + + A++ P P +P S + P + A
Sbjct: 342 GGSTRTPRPAAAQPSQKITATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTA--------- 392
Query: 163 QQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQP-GRRPGLGRAASP 210
P++F P + P R +PA ++RP+ +P R PG+ R P
Sbjct: 393 ---PSSFTKSALPTQKQVPPTSRPVPARVSRPAEKPIQRNPGMPRPPPP 438
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 55.8 bits (133), Expect = 5e-08
Identities = 63/192 (32%), Positives = 71/192 (36%), Gaps = 30/192 (15%)
Query: 70 ETEAPGSSTHVGA-GNSSDPATSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRA 127
E PG G G P + G RGP P PPGPAG G+
Sbjct: 267 ERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEP-------------GKP 313
Query: 128 SRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRT- 186
PG P +P SPG G++G G + F GR PG G PPG
Sbjct: 314 GAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGS-RGFPGRGIPGPPG--PPGTAG 370
Query: 187 LPAPLAR--PSTQPGRRPGLGRAASPLGPRGA-GVTGAGPATQGGRDRGRWGRWVRRRVP 243
LP L R P PGRR G P GPRG G P GR G
Sbjct: 371 LPGELGRVGPVGDPGRRGPPGPPGPP-GPRGTIGFHDGDPLCPNACPPGRSGY------- 422
Query: 244 CPLPGLRPHERA 255
LPG+R H+ A
Sbjct: 423 PGLPGMRGHKGA 434
Score = 44.7 bits (104), Expect = 1e-04
Identities = 44/146 (30%), Positives = 55/146 (37%), Gaps = 8/146 (5%)
Query: 82 AGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGC--PPSPRGS 139
A + P + G P P PPGP G FP + G ++ G PG P+G
Sbjct: 778 AASLKRPDSGATGLPGRPGPPGPPGPPGENGFPGQMG-IRGLPGIKGPPGALGLRGPKGD 836
Query: 140 RQERGANSPGRSGARGCGGAAALQQE--PTNFRGRPRPGARGTDPPGRTLPAPLARPSTQ 197
E+G P G G GA L + P ++ R G RG PPG + P
Sbjct: 837 LGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDGERG--PPGVAGIPGVPGPPGP 894
Query: 198 PGRRPGLGRAASPLGPRGAGVTGAGP 223
PG PG AS G GP
Sbjct: 895 PG-LPGFCEPASCTMQAGQRAFNKGP 919
Score = 37.7 bits (86), Expect = 0.014
Identities = 72/235 (30%), Positives = 82/235 (34%), Gaps = 46/235 (19%)
Query: 36 LGSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGG 95
LGSP LPG P PP GV E PG GA A G
Sbjct: 645 LGSP----GLPGL----PGPPGLPGMKGDRGVVGE---PGPKGEQGASGEEGEA-----G 688
Query: 96 SRGPHPTLP-PGPAGSLVFPERRGSLQDRLGRASRPGC-----PPSPRGSRQERGANSPG 149
RG + PGP GS P G L+ G PG PP PRG + E+GA G
Sbjct: 689 ERGELGDIGLPGPKGSAGNPGEPG-LRGPEGSRGLPGVEGPRGPPGPRGVQGEQGAT--G 745
Query: 150 RSGARGCGGAAALQQEPTNFRGR-------------PRPGARGTDPPGRTLPAPLARPST 196
G +G G A Q R RP + T PGR P P
Sbjct: 746 LPGVQGPPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPG 805
Query: 197 QPGRRPGLGRAASP--LGPRGA-GVTGAGPATQGGRDRGRWGRWVRRRVPCPLPG 248
+ G +G P GP GA G+ G +RG GR P LPG
Sbjct: 806 ENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRG-----PNGLPG 855
Score = 35.0 bits (79), Expect = 0.092
Identities = 63/248 (25%), Positives = 76/248 (30%), Gaps = 34/248 (13%)
Query: 36 LGSPLDRNPLPGPERRGPRPP-------QTIPTLFLAGVFSETEAPGSSTHVGA-GNSSD 87
+G P R P P GPR P G PG H GA G +
Sbjct: 381 VGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKGEIGE 440
Query: 88 PATSRLGGSRGPHPTL-------PPGPAG-----SLVFPERRGSLQDRLGRASRPGCPPS 135
P G G L PPG G +V + + G G P +
Sbjct: 441 PGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGA 500
Query: 136 PRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTD----------PPGR 185
P Q G G RG GA + P PG G D PG+
Sbjct: 501 PGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGEPGK 560
Query: 186 TLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDR-GRWG--RWVRRRV 242
P A PG PG+ A G +G+ P G + G+ G V R
Sbjct: 561 PGPPGDAGLQGLPG-VPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRG 619
Query: 243 PCPLPGLR 250
P LPG R
Sbjct: 620 PQGLPGSR 627
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 55.5 bits (132), Expect = 7e-08
Identities = 58/173 (33%), Positives = 66/173 (38%), Gaps = 29/173 (16%)
Query: 88 PATSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGAN 146
P + G RGP P PPGPAG G+ PG P +P
Sbjct: 43 PGIDGIDGDRGPKGPPGPPGPAGEP-------------GKPGAPGKPGTPGADGLTGPDG 89
Query: 147 SPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRT-LPAPLAR--PSTQPGRRPG 203
SPG G++G G + F GR PG G PPG LP L R P PGRR
Sbjct: 90 SPGSIGSKGQKGEPGVPGS-RGFPGRGIPGPPG--PPGTAGLPGELGRVGPVGDPGRRGP 146
Query: 204 LGRAASPLGPRGA-GVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERA 255
G P GPRG G P GR G LPG+R H+ A
Sbjct: 147 PGPPGPP-GPRGTIGFHDGDPLCPNACPPGRSGY-------PGLPGMRGHKGA 191
Score = 44.7 bits (104), Expect = 1e-04
Identities = 44/146 (30%), Positives = 55/146 (37%), Gaps = 8/146 (5%)
Query: 82 AGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGC--PPSPRGS 139
A + P + G P P PPGP G FP + G ++ G PG P+G
Sbjct: 535 AASLKRPDSGATGLPGRPGPPGPPGPPGENGFPGQMG-IRGLPGIKGPPGALGLRGPKGD 593
Query: 140 RQERGANSPGRSGARGCGGAAALQQE--PTNFRGRPRPGARGTDPPGRTLPAPLARPSTQ 197
E+G P G G GA L + P ++ R G RG PPG + P
Sbjct: 594 LGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDGERG--PPGVAGIPGVPGPPGP 651
Query: 198 PGRRPGLGRAASPLGPRGAGVTGAGP 223
PG PG AS G GP
Sbjct: 652 PG-LPGFCEPASCTMQAGQRAFNKGP 676
Score = 37.7 bits (86), Expect = 0.014
Identities = 72/235 (30%), Positives = 82/235 (34%), Gaps = 46/235 (19%)
Query: 36 LGSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGG 95
LGSP LPG P PP GV E PG GA A G
Sbjct: 402 LGSP----GLPGL----PGPPGLPGMKGDRGVVGE---PGPKGEQGASGEEGEA-----G 445
Query: 96 SRGPHPTLP-PGPAGSLVFPERRGSLQDRLGRASRPGC-----PPSPRGSRQERGANSPG 149
RG + PGP GS P G L+ G PG PP PRG + E+GA G
Sbjct: 446 ERGELGDIGLPGPKGSAGNPGEPG-LRGPEGSRGLPGVEGPRGPPGPRGVQGEQGAT--G 502
Query: 150 RSGARGCGGAAALQQEPTNFRGR-------------PRPGARGTDPPGRTLPAPLARPST 196
G +G G A Q R RP + T PGR P P
Sbjct: 503 LPGVQGPPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPG 562
Query: 197 QPGRRPGLGRAASP--LGPRGA-GVTGAGPATQGGRDRGRWGRWVRRRVPCPLPG 248
+ G +G P GP GA G+ G +RG GR P LPG
Sbjct: 563 ENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRG-----PNGLPG 612
Score = 37.0 bits (84), Expect = 0.024
Identities = 56/199 (28%), Positives = 68/199 (34%), Gaps = 21/199 (10%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPT 102
P P E P P T G+ +PGS +G+ G +P G G
Sbjct: 61 PGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGS---IGSKGQKGEPGVPGSRGFPGRGIP 117
Query: 103 LPPGPAGSLVFP---ERRGSLQDRLGRASRPGCPPSPRGSRQERG----------ANSPG 149
PPGP G+ P R G + D GR PG PP P G R G A PG
Sbjct: 118 GPPGPPGTAGLPGELGRVGPVGDP-GRRGPPG-PPGPPGPRGTIGFHDGDPLCPNACPPG 175
Query: 150 RSGARGCGGAAALQQEPTNFRGRPRPGARGTD-PPGRTLPAPLARPSTQPGRRPGLGRAA 208
RSG G G + R G +G + G P G R G+
Sbjct: 176 RSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLR-GITGIV 234
Query: 209 SPLGPRGAGVTGAGPATQG 227
G +GA P QG
Sbjct: 235 GDKGEKGARGLDGEPGPQG 253
Score = 35.0 bits (79), Expect = 0.092
Identities = 63/248 (25%), Positives = 76/248 (30%), Gaps = 34/248 (13%)
Query: 36 LGSPLDRNPLPGPERRGPRPP-------QTIPTLFLAGVFSETEAPGSSTHVGA-GNSSD 87
+G P R P P GPR P G PG H GA G +
Sbjct: 138 VGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKGEIGE 197
Query: 88 PATSRLGGSRGPHPTL-------PPGPAG-----SLVFPERRGSLQDRLGRASRPGCPPS 135
P G G L PPG G +V + + G G P +
Sbjct: 198 PGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGA 257
Query: 136 PRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTD----------PPGR 185
P Q G G RG GA + P PG G D PG+
Sbjct: 258 PGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGEPGK 317
Query: 186 TLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDR-GRWG--RWVRRRV 242
P A PG PG+ A G +G+ P G + G+ G V R
Sbjct: 318 PGPPGDAGLQGLPG-VPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRG 376
Query: 243 PCPLPGLR 250
P LPG R
Sbjct: 377 PQGLPGSR 384
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 53.5 bits (127), Expect = 3e-07
Identities = 63/199 (31%), Positives = 76/199 (38%), Gaps = 33/199 (16%)
Query: 46 PG-PERRGPRPPQTIPTLFLAGVFSETEAPGSST-HVGAGNSSDPATSRLGGSRG-PHPT 102
PG P RG + + P L G APG S + AG DP L G RG P P
Sbjct: 1219 PGKPGLRGQKGDRGFPGL--QGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERGRPGPA 1276
Query: 103 LPPGPAGSLVFPERRGSLQDRLGRASRPGCP--PSPRGSRQERGANSPGRSGARGCGGAA 160
PPGP G G PG P P P+G + ++G PG SG G G
Sbjct: 1277 GPPGPPGP----------SSNQGDTGDPGFPGIPGPKGPKGDQGI--PGFSGLPGELGLK 1324
Query: 161 ALQQEPTNFRGRPRPGARGTDP-----PGRTLPAPLARPSTQPGRRPGLGRAASPLGPRG 215
++ EP F G P DP G+ P + PG+ P P GP G
Sbjct: 1325 GMRGEP-GFMGTPGKVGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLG 1383
Query: 216 -------AGVTGAGPATQG 227
G+TG P QG
Sbjct: 1384 LPGIDGIPGLTG-DPGAQG 1401
Score = 50.8 bits (120), Expect = 2e-06
Identities = 57/187 (30%), Positives = 72/187 (38%), Gaps = 37/187 (19%)
Query: 64 LAGVFSETEAPGSSTHVGA----------------------GNSSDPATSRLGGSRGPHP 101
+AG+ E PGSS H GA G + P T G+ GP
Sbjct: 1134 VAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSI 1193
Query: 102 TLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAA 161
T PGPAG +G +G +PG RG + +RG PG G G GA
Sbjct: 1194 TGVPGPAGLPGPKGEKGYPGIGIGAPGKPGL----RGQKGDRG--FPGLQGPAGLPGAPG 1247
Query: 162 LQQEPTNFRGRP----RPGARG-TDPPGRTLPAPLARPSTQPGRR--PGLGRAASPLGPR 214
+ P+ G+P RPG G PG P PS+ G PG P GP+
Sbjct: 1248 ISL-PSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGPK 1306
Query: 215 G-AGVTG 220
G G+ G
Sbjct: 1307 GDQGIPG 1313
Score = 34.3 bits (77), Expect = 0.16
Identities = 59/222 (26%), Positives = 76/222 (34%), Gaps = 46/222 (20%)
Query: 43 NPLPG-PERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA----------GNSSDP--A 89
N +PG P + GPR P + G PG + G G+ DP A
Sbjct: 106 NGIPGHPGQPGPRGPPGLDGC--NGTQGAVGFPGPDGYPGLLGPPGLPGQKGSKGDPVLA 163
Query: 90 TSRLGGSRGPHPTLP-----PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERG 144
G +G P LP GP G+ FP G G PG PP P G G
Sbjct: 164 PGSFKGMKGD-PGLPGLDGITGPQGAPGFPGAVGPAGPP-GLQGPPG-PPGPLGPDGNMG 220
Query: 145 ANSPGRSGARGCGGAAALQQEPTN-----FRGRPR--------PGARG----TDPPGRTL 187
G G +G G P + F G P+ PG +G + PPG
Sbjct: 221 LGFQGEKGVKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPG--- 277
Query: 188 PAPLARPSTQPGRR--PGLGRAASPLGPRGAGVTGAGPATQG 227
P + + G + G+ P GP G+ P QG
Sbjct: 278 -FPGLGTTGEKGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQG 318
Score = 34.3 bits (77), Expect = 0.16
Identities = 49/166 (29%), Positives = 64/166 (38%), Gaps = 30/166 (18%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSP-----R 137
G P S G++G G G++ FP +G ++G + G P +P
Sbjct: 1082 GPKGQPGESGFKGTKGRD-----GLIGNIGFPGNKGE-DGKVGVSGDVGLPGAPGFPGVA 1135
Query: 138 GSRQERGANSPGRSGARGCGGAAALQQ--EPTNFRGRP-------RPGARGT-DPPGRTL 187
G R E G PG SG +G G P F G P PG +GT PG ++
Sbjct: 1136 GMRGEPGL--PGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSI 1193
Query: 188 -----PAPLARPSTQPGRRPGLG-RAASPLGPRGAGVTGAGPATQG 227
PA L P + G PG+G A G RG P QG
Sbjct: 1194 TGVPGPAGLPGPKGEKG-YPGIGIGAPGKPGLRGQKGDRGFPGLQG 1238
Score = 32.7 bits (73), Expect = 0.46
Identities = 42/152 (27%), Positives = 56/152 (36%), Gaps = 20/152 (13%)
Query: 37 GSPLDRNPLPGPERRG-PRPPQTIPTLFLAGVFSETEAPGSSTHVGA----GNSSDPATS 91
G+P ++ P G P P + + L+L G + GS+ G G + P
Sbjct: 939 GTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGEAGRPGPP 998
Query: 92 RLGGSRGPHPTL--------PPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQER 143
L G+ G + PPG G P +GS G PG P GS+ R
Sbjct: 999 GLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGLKGSS----GITGFPGMP-GESGSQGIR 1053
Query: 144 GANSPGRSGARGCGGAAALQQEPTNFRGRPRP 175
G SPG GA G G + G P P
Sbjct: 1054 G--SPGLPGASGLPGLKGDNGQTVEISGSPGP 1083
Score = 28.9 bits (63), Expect = 6.6
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
Query: 104 PPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERG-ANSPGRSGARGCGGAAAL 162
PPGP G + P +G+ DR GS +G A +PG G G G
Sbjct: 499 PPGPWGLIGLPGLKGARGDR--------------GSGGAQGPAGAPGLVGPLGPSGPKGK 544
Query: 163 QQEPTNFRGRPRPGARG 179
+ EP + PG RG
Sbjct: 545 KGEPILSTIQGMPGDRG 561
Score = 28.5 bits (62), Expect = 8.6
Identities = 45/169 (26%), Positives = 57/169 (33%), Gaps = 26/169 (15%)
Query: 74 PGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLV-FPERRGSLQDRLGRASRPGC 132
PG G G + L G +G HP P P L P RG D+ G+ PG
Sbjct: 587 PGLPGDGGQGFPGEKGLPGLPGEKG-HPGPPGLPGNGLPGLPGPRGLPGDK-GKDGLPGQ 644
Query: 133 PPSPR-----------GSRQERG-ANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARG- 179
P GS G +PG G +G G +P + + PG+ G
Sbjct: 645 QGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGL 704
Query: 180 ---TDPPGRTLPAPLARPSTQ-----PGRRPGLGRAASPLGPRGAGVTG 220
+ PG P P PG+ G SP P G TG
Sbjct: 705 VHLPELPG--FPGPRGEKGLPGFPGLPGKDGLPGMIGSPGLPGSKGATG 751
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 53.5 bits (127), Expect = 3e-07
Identities = 62/204 (30%), Positives = 72/204 (35%), Gaps = 34/204 (16%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPP 105
PG GPR + P G + PG + G P G P P P
Sbjct: 1218 PGISPPGPRGKKGPP-----GPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPR 1272
Query: 106 GPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQE 165
G G P L+ G PG PP P G PG G GC G Q+
Sbjct: 1273 GAPGPPGLPGSVDLLRGEPGDCGLPG-PPGPPGP-----PGPPGYKGFPGCDGKDG-QKG 1325
Query: 166 PTNFRGRP-------RPGARG-TDPPGRTLPAPLARPSTQPG---------RRPGLGRAA 208
P F G PG +G PPGR P L P +PG R PGL A
Sbjct: 1326 PVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPGAP 1385
Query: 209 SPLGPRGA-GVTG----AGPATQG 227
GP GA G+ G +GP +G
Sbjct: 1386 GMRGPEGAMGLPGMRGPSGPGCKG 1409
Score = 45.1 bits (105), Expect = 9e-05
Identities = 66/213 (30%), Positives = 75/213 (35%), Gaps = 44/213 (20%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
G P D+ P PGP+ GPR P L PGS + +P L G
Sbjct: 1258 GPPGDQGP-PGPD--GPRGAPGPPGL-----------PGSVDLL----RGEPGDCGLPGP 1299
Query: 97 RGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANS----PGRSG 152
GP PPGP G FP G + G PG P P G G PGR G
Sbjct: 1300 PGPPG--PPGPPGYKGFPGCDGK-DGQKGPVGFPG-PQGPHGFPGPPGEKGLPGPPGRKG 1355
Query: 153 ARGCGGAAALQQEPTNFRGRPR----PGARGTDPPGRTLPAPLARPSTQPGRR--PGL-- 204
G G P + PR PGA G P + P R + PG + PGL
Sbjct: 1356 PTGLPGPRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCKGEPGLDG 1415
Query: 205 -----GRAASPLGPRGAGVTG-----AGPATQG 227
G SP P G TG GP G
Sbjct: 1416 RRGVDGVPGSPGPPGRKGDTGEDGYPGGPGPPG 1448
Score = 44.3 bits (103), Expect = 2e-04
Identities = 59/195 (30%), Positives = 72/195 (36%), Gaps = 24/195 (12%)
Query: 46 PGPERRGPRPPQTIPTLFLA-GVFSETEAPGSSTHVGA----GNSSDPATSRLGGSRGPH 100
PGP +G PQ P L + G PG++ G G+ DP GG +G
Sbjct: 685 PGP--KGFPGPQGAPGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPG---FGGEKGSS 739
Query: 101 PTLPPGPAGSLVFPERRGSLQD----RLGRASRPGCP--PSPRGSRQERGANSPGRSGAR 154
P PPGP GS ++G D LG + G P +G R + G PG G
Sbjct: 740 PVGPPGPPGSPGVNGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPGC--PGAEGPA 797
Query: 155 GCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPR 214
G G L+ PG G PPG + QPG G SP P
Sbjct: 798 GIPGFLGLKGPKGREGHAGFPGVPG--PPGHSCERGAPGIPGQPGLP---GYPGSPGAPG 852
Query: 215 GAGVTG-AGPATQGG 228
G G G GP G
Sbjct: 853 GKGQPGDVGPPGPAG 867
Score = 44.3 bits (103), Expect = 2e-04
Identities = 42/128 (32%), Positives = 48/128 (37%), Gaps = 20/128 (15%)
Query: 95 GSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPG-CPPSPRGSRQERGANSPGRSGA 153
G+ G H PPGP G L+ G PG PP PRG + G PG SG
Sbjct: 1190 GASGLHDVGPPGPVGI-------PGLKGERGDPGSPGISPPGPRGKKGPPG--PPGSSGP 1240
Query: 154 RGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGR------RPGLGRA 207
G GA + P + PG +G PPG P P PG PG
Sbjct: 1241 PGPAGATG--RAPKDIPDPGPPGDQG--PPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGL 1296
Query: 208 ASPLGPRG 215
P GP G
Sbjct: 1297 PGPPGPPG 1304
Score = 43.5 bits (101), Expect = 3e-04
Identities = 64/233 (27%), Positives = 73/233 (31%), Gaps = 67/233 (28%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL-- 103
PGP P PP + L G PG G+ P S + G+RGP
Sbjct: 1023 PGP----PGPPGPPGSTGLRGFIGFPGLPGDQGE--PGSPGPPGFSGIDGARGPKGNKGD 1076
Query: 104 ------PPGPAGSLVFPERRGSLQDRLGRASRPGCP--PSPRGSRQERGANSPGRSGARG 155
PPGP G P G G + G P PRGS G PG SG G
Sbjct: 1077 PASHFGPPGPKGEPGSPGCPG----HFGASGEQGLPGIQGPRGSPGRPGP--PGSSGPPG 1130
Query: 156 CGGAAALQQEPTNFRGRPR----PGARGTD-PPGRTLPAPLARPSTQPGRR--------- 201
C G + RG+P PG RG PG P + PS PG
Sbjct: 1131 CPGDHGMP----GLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQK 1186
Query: 202 -------------------PGL--------GRAASPLGPRGAGVTGAGPATQG 227
PGL SP GPRG P + G
Sbjct: 1187 GTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSG 1239
Score = 42.0 bits (97), Expect = 8e-04
Identities = 48/147 (32%), Positives = 51/147 (34%), Gaps = 16/147 (10%)
Query: 70 ETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRAS 128
E APG G G P GG P PPGPAG P L R G
Sbjct: 829 ERGAPGIPGQPGLPGYPGSPGAP--GGKGQPGDVGPPGPAGMKGLP----GLPGRPGAHG 882
Query: 129 RPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLP 188
PG P P + PG G RG G E R +PGA G PG
Sbjct: 883 PPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGE------RGKPGAEGC--PGAKGE 934
Query: 189 APLARPSTQPGRRPGLGRAASPLGPRG 215
S PG R GL A +GP G
Sbjct: 935 PGEKGMSGLPGDR-GLRGAKGAIGPPG 960
Score = 41.2 bits (95), Expect = 0.001
Identities = 78/306 (25%), Positives = 96/306 (31%), Gaps = 78/306 (25%)
Query: 39 PLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSR 97
P + LPGP GP+ P+ +P G E PG+ GA G + S L G R
Sbjct: 892 PFGDDGLPGPP--GPKGPRGLPGF--PGFPGERGKPGAEGCPGAKGEPGEKGMSGLPGDR 947
Query: 98 GPHPTL----------------------PPGPAGSLVFPERRGS-----LQDRLGRASR- 129
G PGP G FP RG +Q R G R
Sbjct: 948 GLRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRY 1007
Query: 130 -----------------PGCPPSPRGSRQERG----------------ANSPGRSGARGC 156
P PP P GS RG PG SG G
Sbjct: 1008 GPPGFHRGEPGEKGQPGPPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGA 1067
Query: 157 GGAAALQQEPTNFRGRPRPGARGTDP--PG-------RTLPAPLARPSTQPGRRPGLGRA 207
G + +P + G P P P PG + LP + P PGR G +
Sbjct: 1068 RGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPG-IQGPRGSPGRPGPPGSS 1126
Query: 208 ASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLR-PHERAGAALLATCRGN 266
P P G+ G D G G +P P PG++ P G L +G
Sbjct: 1127 GPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGP-PGIKGPSGSPGLNGLHGLKGQ 1185
Query: 267 APTPSA 272
T A
Sbjct: 1186 KGTKGA 1191
Score = 40.8 bits (94), Expect = 0.002
Identities = 56/174 (32%), Positives = 66/174 (37%), Gaps = 43/174 (24%)
Query: 74 PGSSTHVG-AGNSSDPAT------SRLGGSRGPHPTLPPGPAG-----SLVFPERRGSLQ 121
PGS G AG DP + GG P P PPG AG L FP G
Sbjct: 583 PGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFPGPPG--- 639
Query: 122 DRLGRASRPGCP--PSPRGSRQERG------ANSPGRSGARGCGGAAALQQEPTNFRG-R 172
G PG P P G + ++G PGR G G G P F G +
Sbjct: 640 -ERGHPGVPGHPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPG----PKGFPGPQ 694
Query: 173 PRPGARGTD----PPGRTLPAPLARPSTQPGRR-----PGLG--RAASPLGPRG 215
PG G+D PG A + P PG R PG G + +SP+GP G
Sbjct: 695 GAPGLSGSDGHKGRPGTPGTAEIPGP---PGFRGDMGDPGFGGEKGSSPVGPPG 745
Score = 38.9 bits (89), Expect = 0.006
Identities = 46/145 (31%), Positives = 52/145 (35%), Gaps = 35/145 (24%)
Query: 99 PHPTLPPGPAGSLVFPERRGSLQDR-----LGRASRPGCPPSPRGSRQERGANSPGRSGA 153
P P PPGP G P R+GS D LG PG PP G PG+ GA
Sbjct: 496 PGPMGPPGPPG---LPGRQGSKGDLGLPGWLGTKGDPG-PPGAEGP-----PGLPGKHGA 546
Query: 154 RGCGGAAALQQEPTNFRGRPRPGARGTD-PPG----------------RTLPAPLARPST 196
G G + + R + G RG D PPG + P P P
Sbjct: 547 SGPPGNKGAKGDMVVSRVKGHKGERGPDGPPGFPGQPGSHGRDGHAGEKGDPGP---PGD 603
Query: 197 QPGRRPGLGRAASPLGPRG-AGVTG 220
PG PLGP G AG G
Sbjct: 604 HEDATPGGKGFPGPLGPPGKAGPVG 628
Score = 37.0 bits (84), Expect = 0.024
Identities = 40/131 (30%), Positives = 48/131 (36%), Gaps = 35/131 (26%)
Query: 95 GSRGP-----HPTLP--PGPAGSLVFPERRGS--LQDRLGRASRPGCPPSPRGSRQERGA 145
G +GP H P PGP G RG+ + + G PG P +P G Q
Sbjct: 804 GLKGPKGREGHAGFPGVPGPPGHSC---ERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDV 860
Query: 146 NSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRT-LPAPLARPSTQPGRRPGL 204
PG +G +G G RPGA G PPG +P P GL
Sbjct: 861 GPPGPAGMKGLPGLPG------------RPGAHG--PPGLPGIPGPFG--------DDGL 898
Query: 205 GRAASPLGPRG 215
P GPRG
Sbjct: 899 PGPPGPKGPRG 909
Score = 34.7 bits (78), Expect = 0.12
Identities = 42/146 (28%), Positives = 50/146 (34%), Gaps = 33/146 (22%)
Query: 95 GSRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANS-PGRSG 152
GSRGP P P GP G L P G ++ R R PP G + ++G PG G
Sbjct: 62 GSRGPPGPPGPQGPIGPLGAPGPIGLSGEKGMRGDRG--PPGAAGDKGDKGPTGVPGFPG 119
Query: 153 ARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLG 212
G G PG PPG P +PG G P
Sbjct: 120 LDGIPG---------------HPG-----PPG---------PRGKPGMSGHNGSRGDPGF 150
Query: 213 PRGAGVTGAGPATQGGRDRGRWGRWV 238
P G G G G ++G G V
Sbjct: 151 PGGRGALGPGGPLGHPGEKGEKGNSV 176
Score = 30.4 bits (67), Expect = 2.3
Identities = 49/179 (27%), Positives = 58/179 (32%), Gaps = 46/179 (25%)
Query: 74 PGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL------------- 120
PG G G + G RG PG GS FP +G L
Sbjct: 287 PGRKGESGIGAKGEKGIPGFPGPRGD-----PGSYGSPGFPGLKGELGLVGDPGLFGLIG 341
Query: 121 -QDRLGRASRPG------CPPSP-RGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGR 172
+ G PG PP P +G + G PGR G G G P GR
Sbjct: 342 PKGDPGNRGHPGPPGVLVTPPLPLKGPPGDPG--FPGRYGETGDVGPPG----PPGLLGR 395
Query: 173 PRPGARG-TDPPGRT-------LPAPL---ARPSTQPGRRPGLGRAASPLGPRGAGVTG 220
P G PPG LP RP + PG+ G+ SP P G+ G
Sbjct: 396 PGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKP---GKPGSPGLPGAPGLQG 451
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 53.5 bits (127), Expect = 3e-07
Identities = 63/199 (31%), Positives = 76/199 (38%), Gaps = 33/199 (16%)
Query: 46 PG-PERRGPRPPQTIPTLFLAGVFSETEAPGSST-HVGAGNSSDPATSRLGGSRG-PHPT 102
PG P RG + + P L G APG S + AG DP L G RG P P
Sbjct: 1218 PGKPGLRGQKGDRGFPGL--QGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERGRPGPA 1275
Query: 103 LPPGPAGSLVFPERRGSLQDRLGRASRPGCP--PSPRGSRQERGANSPGRSGARGCGGAA 160
PPGP G G PG P P P+G + ++G PG SG G G
Sbjct: 1276 GPPGPPGP----------SSNQGDTGDPGFPGIPGPKGPKGDQGI--PGFSGLPGELGLK 1323
Query: 161 ALQQEPTNFRGRPRPGARGTDP-----PGRTLPAPLARPSTQPGRRPGLGRAASPLGPRG 215
++ EP F G P DP G+ P + PG+ P P GP G
Sbjct: 1324 GMRGEP-GFMGTPGKVGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLG 1382
Query: 216 -------AGVTGAGPATQG 227
G+TG P QG
Sbjct: 1383 LPGIDGIPGLTG-DPGAQG 1400
Score = 50.8 bits (120), Expect = 2e-06
Identities = 57/187 (30%), Positives = 72/187 (38%), Gaps = 37/187 (19%)
Query: 64 LAGVFSETEAPGSSTHVGA----------------------GNSSDPATSRLGGSRGPHP 101
+AG+ E PGSS H GA G + P T G+ GP
Sbjct: 1133 VAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSI 1192
Query: 102 TLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAA 161
T PGPAG +G +G +PG RG + +RG PG G G GA
Sbjct: 1193 TGVPGPAGLPGPKGEKGYPGIGIGAPGKPGL----RGQKGDRG--FPGLQGPAGLPGAPG 1246
Query: 162 LQQEPTNFRGRP----RPGARG-TDPPGRTLPAPLARPSTQPGRR--PGLGRAASPLGPR 214
+ P+ G+P RPG G PG P PS+ G PG P GP+
Sbjct: 1247 ISL-PSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGPK 1305
Query: 215 G-AGVTG 220
G G+ G
Sbjct: 1306 GDQGIPG 1312
Score = 34.3 bits (77), Expect = 0.16
Identities = 59/222 (26%), Positives = 76/222 (34%), Gaps = 46/222 (20%)
Query: 43 NPLPG-PERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA----------GNSSDP--A 89
N +PG P + GPR P + G PG + G G+ DP A
Sbjct: 105 NGIPGHPGQPGPRGPPGLDGC--NGTQGAVGFPGPDGYPGLLGPPGLPGQKGSKGDPVLA 162
Query: 90 TSRLGGSRGPHPTLP-----PGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERG 144
G +G P LP GP G+ FP G G PG PP P G G
Sbjct: 163 PGSFKGMKGD-PGLPGLDGITGPQGAPGFPGAVGPAGPP-GLQGPPG-PPGPLGPDGNMG 219
Query: 145 ANSPGRSGARGCGGAAALQQEPTN-----FRGRPR--------PGARG----TDPPGRTL 187
G G +G G P + F G P+ PG +G + PPG
Sbjct: 220 LGFQGEKGVKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPG--- 276
Query: 188 PAPLARPSTQPGRR--PGLGRAASPLGPRGAGVTGAGPATQG 227
P + + G + G+ P GP G+ P QG
Sbjct: 277 -FPGLGTTGEKGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQG 317
Score = 34.3 bits (77), Expect = 0.16
Identities = 49/166 (29%), Positives = 64/166 (38%), Gaps = 30/166 (18%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSP-----R 137
G P S G++G G G++ FP +G ++G + G P +P
Sbjct: 1081 GPKGQPGESGFKGTKGRD-----GLIGNIGFPGNKGE-DGKVGVSGDVGLPGAPGFPGVA 1134
Query: 138 GSRQERGANSPGRSGARGCGGAAALQQ--EPTNFRGRP-------RPGARGT-DPPGRTL 187
G R E G PG SG +G G P F G P PG +GT PG ++
Sbjct: 1135 GMRGEPGL--PGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSI 1192
Query: 188 -----PAPLARPSTQPGRRPGLG-RAASPLGPRGAGVTGAGPATQG 227
PA L P + G PG+G A G RG P QG
Sbjct: 1193 TGVPGPAGLPGPKGEKG-YPGIGIGAPGKPGLRGQKGDRGFPGLQG 1237
Score = 32.7 bits (73), Expect = 0.46
Identities = 42/152 (27%), Positives = 56/152 (36%), Gaps = 20/152 (13%)
Query: 37 GSPLDRNPLPGPERRG-PRPPQTIPTLFLAGVFSETEAPGSSTHVGA----GNSSDPATS 91
G+P ++ P G P P + + L+L G + GS+ G G + P
Sbjct: 938 GTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGEAGRPGPP 997
Query: 92 RLGGSRGPHPTL--------PPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQER 143
L G+ G + PPG G P +GS G PG P GS+ R
Sbjct: 998 GLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGLKGSS----GITGFPGMP-GESGSQGIR 1052
Query: 144 GANSPGRSGARGCGGAAALQQEPTNFRGRPRP 175
G SPG GA G G + G P P
Sbjct: 1053 G--SPGLPGASGLPGLKGDNGQTVEISGSPGP 1082
Score = 28.9 bits (63), Expect = 6.6
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
Query: 104 PPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERG-ANSPGRSGARGCGGAAAL 162
PPGP G + P +G+ DR GS +G A +PG G G G
Sbjct: 498 PPGPWGLIGLPGLKGARGDR--------------GSGGAQGPAGAPGLVGPLGPSGPKGK 543
Query: 163 QQEPTNFRGRPRPGARG 179
+ EP + PG RG
Sbjct: 544 KGEPILSTIQGMPGDRG 560
Score = 28.5 bits (62), Expect = 8.6
Identities = 45/169 (26%), Positives = 57/169 (33%), Gaps = 26/169 (15%)
Query: 74 PGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLV-FPERRGSLQDRLGRASRPGC 132
PG G G + L G +G HP P P L P RG D+ G+ PG
Sbjct: 586 PGLPGDGGQGFPGEKGLPGLPGEKG-HPGPPGLPGNGLPGLPGPRGLPGDK-GKDGLPGQ 643
Query: 133 PPSPR-----------GSRQERG-ANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARG- 179
P GS G +PG G +G G +P + + PG+ G
Sbjct: 644 QGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGL 703
Query: 180 ---TDPPGRTLPAPLARPSTQ-----PGRRPGLGRAASPLGPRGAGVTG 220
+ PG P P PG+ G SP P G TG
Sbjct: 704 VHLPELPG--FPGPRGEKGLPGFPGLPGKDGLPGMIGSPGLPGSKGATG 750
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 52.8 bits (125), Expect = 4e-07
Identities = 66/216 (30%), Positives = 77/216 (35%), Gaps = 48/216 (22%)
Query: 39 PLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA----GNSSDPATSRLG 94
P + P RGP P P G E PG G G +P + LG
Sbjct: 1193 PAQKGAKGEPGFRGPPGPYGRP-----GYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLG 1247
Query: 95 -GSRG----PHPTLPPGPAGSLVFPERRGSLQDRLGRASRPG--CPPSPRGSRQERGANS 147
G RG P P PPGP G+ V+ + R G PG PP P+G++ E G
Sbjct: 1248 FGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPG 1307
Query: 148 P----------------GRSGARGCGGAAALQQEP--TNFRGRPRPGARGTDPPGRT--- 186
P G G RG G + EP F G PG G PPG
Sbjct: 1308 PPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPG--PPGPRGYP 1365
Query: 187 -LPAPLARP-STQPGRRPGLGRAASPLGPRGAGVTG 220
+P P QPG PG P GP G G G
Sbjct: 1366 GIPGPKGESIRGQPG-PPG------PQGPPGIGYEG 1394
Score = 49.7 bits (117), Expect = 4e-06
Identities = 50/155 (32%), Positives = 64/155 (41%), Gaps = 22/155 (14%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGC-----PPSPR 137
G DP +G P P PPGP + E+ GS+ G RPG P P+
Sbjct: 1102 GEKGDPGKDGVGQPGLPGPPGPPGPV--VYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPK 1159
Query: 138 ---GSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARP 194
GS+ ERG SPG G +G G ++ G + GA+G +P R P P RP
Sbjct: 1160 GNLGSKGERG--SPGPKGEKGEPG--SIFSPDGGALGPAQKGAKG-EPGFRGPPGPYGRP 1214
Query: 195 STQ-----PGR--RPGLGRAASPLGPRGAGVTGAG 222
+ PGR RPG+ G G G G
Sbjct: 1215 GYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 1249
Score = 48.9 bits (115), Expect = 6e-06
Identities = 62/212 (29%), Positives = 71/212 (33%), Gaps = 40/212 (18%)
Query: 33 FLILGSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSR 92
F + G P P PGP P PP T ++ + VF+E+ PG GN P
Sbjct: 1248 FGMRGMPGPPGP-PGP----PGPPGT--PVYDSNVFAESSRPGPPGL--PGNQGPPGPKG 1298
Query: 93 LGGSRGPHPTLPPGPAGSLVFP------ERRGSLQDR-----LGRASRPGC--------- 132
G GP PGP G F E +G DR G PG
Sbjct: 1299 AKGEVGP-----PGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLP 1353
Query: 133 -PPSPRGSRQERGANSPGRSGARGCGGAAALQQEP-TNFRGRPRPGARGTDPPGRTLPAP 190
PP P G R G P RG G Q P + GR P PPG P
Sbjct: 1354 GPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPG----PPGPPGPPS 1409
Query: 191 LARPSTQPGRRPGLGRAASPLGPRGAGVTGAG 222
P Q PG P GP G +G
Sbjct: 1410 FPGPHRQTISVPGPPGPPGPPGPPGTMGASSG 1441
Score = 47.0 bits (110), Expect = 2e-05
Identities = 64/214 (29%), Positives = 77/214 (35%), Gaps = 52/214 (24%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSR----LGGSRGPH- 100
PGP R P +T G E APG H G+ + PA +R L G+ GP
Sbjct: 955 PGPPGREGPPGRTGQK----GSLGEAGAPG---HKGSKGAPGPAGARGESGLAGAPGPAG 1007
Query: 101 ------PTLPPGPAGSLVFPERRGS-------LQDRLGRASRPGCP--------PSPRGS 139
P PPGP F + GS + G PG P P G+
Sbjct: 1008 PPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGA 1067
Query: 140 RQERGANS-PGRSGARGCGGAAALQQEPTNFRG----RPRPGARGTDPPGRT----LPAP 190
+ E GA+ PG G G G A Q P RG + PG G PG P P
Sbjct: 1068 KGEVGADGVPGFPGLPGREGIAG-PQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 1126
Query: 191 LARPSTQPGR---------RPGLGRAASPLGPRG 215
+ S Q G RPG P GP+G
Sbjct: 1127 VVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKG 1160
Score = 41.2 bits (95), Expect = 0.001
Identities = 63/194 (32%), Positives = 72/194 (37%), Gaps = 38/194 (19%)
Query: 37 GSPLDRNPL-----PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHV---GAGNSSDP 88
G+P D P PG RGP PQ P G + T + G+G D
Sbjct: 841 GTPGDVGPKGDKGDPGVGERGPPGPQGPP-----GPPGPSFRHDKLTFIDMEGSGFGGD- 894
Query: 89 ATSRLGGSRG-PHPTLPPGPAGSLVFPERRG-SLQDRLGRASRPGCP-----------PS 135
L G RG P P PPG G P R G + D G A PG P P
Sbjct: 895 -LEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPG 953
Query: 136 PRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRP-GARG----TDPPGRTLPAP 190
P G G PGR+G +G G A + +G P P GARG PG P
Sbjct: 954 PPGPPGREGP--PGRTGQKGSLGEAGAPGHKGS-KGAPGPAGARGESGLAGAPGPAGPPG 1010
Query: 191 LARPSTQPGRRPGL 204
P PG PGL
Sbjct: 1011 PPGPPGPPG--PGL 1022
Score = 39.3 bits (90), Expect = 0.005
Identities = 52/192 (27%), Positives = 69/192 (35%), Gaps = 35/192 (18%)
Query: 54 RPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS---RGPHP---TLPPGP 107
R PQ P L +++ + G G++ + G + R P P T PP
Sbjct: 642 RDPQVSPMHCLDEEGDDSDGASGDSGSGLGDARELLREETGAALKPRLPAPPPVTTPPLA 701
Query: 108 AGSLVFPERRGSLQDR-----LGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAAL 162
GS R ++++ LG + PG S S + +PG G GG
Sbjct: 702 GGSSTEDSRSEEVEEQTTVASLGAQTLPG---SDSVSTWDGSVRTPG--GRVKEGGLKGQ 756
Query: 163 QQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGA- 221
+ EP G P P R P LP P PGL SPLGP G +
Sbjct: 757 KGEP----GVPGPPGRAGPPGSPCLPGP-----------PGLPCPVSPLGPAGPALQTVP 801
Query: 222 ---GPATQGGRD 230
GP GRD
Sbjct: 802 GPQGPPGPPGRD 813
Score = 35.8 bits (81), Expect = 0.054
Identities = 57/215 (26%), Positives = 68/215 (31%), Gaps = 61/215 (28%)
Query: 45 LPGPE-RRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
+PGP R GP +P PG V + PA + G +GP
Sbjct: 762 VPGPPGRAGPPGSPCLPG-----------PPGLPCPVSPLGPAGPALQTVPGPQGP---- 806
Query: 104 PPGPAGSLVFPERRGSLQD--------RLGRASRPGCP--PSPRGSRQERGANSPGRSGA 153
PGP G P R G D G PG P P+G + + G G G
Sbjct: 807 -PGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGP 865
Query: 154 R-----------------------GCGGAAALQQEPTNFRGRP-RPGARG-TDPPGR--- 185
+ G GG + P F G P PG G PGR
Sbjct: 866 QGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGV 925
Query: 186 ---TLPAPLARPSTQPGRR--PGLGRAASPLGPRG 215
+P P P PGR PG P GP G
Sbjct: 926 NSSDVPGPAGLPGV-PGREGPPGFPGLPGPPGPPG 959
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 52.8 bits (125), Expect = 4e-07
Identities = 66/216 (30%), Positives = 77/216 (35%), Gaps = 48/216 (22%)
Query: 39 PLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA----GNSSDPATSRLG 94
P + P RGP P P G E PG G G +P + LG
Sbjct: 778 PAQKGAKGEPGFRGPPGPYGRP-----GYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLG 832
Query: 95 -GSRG----PHPTLPPGPAGSLVFPERRGSLQDRLGRASRPG--CPPSPRGSRQERGANS 147
G RG P P PPGP G+ V+ + R G PG PP P+G++ E G
Sbjct: 833 FGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPG 892
Query: 148 P----------------GRSGARGCGGAAALQQEP--TNFRGRPRPGARGTDPPGRT--- 186
P G G RG G + EP F G PG G PPG
Sbjct: 893 PPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPG--PPGPRGYP 950
Query: 187 -LPAPLARP-STQPGRRPGLGRAASPLGPRGAGVTG 220
+P P QPG PG P GP G G G
Sbjct: 951 GIPGPKGESIRGQPG-PPG------PQGPPGIGYEG 979
Score = 49.7 bits (117), Expect = 4e-06
Identities = 50/155 (32%), Positives = 64/155 (41%), Gaps = 22/155 (14%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGC-----PPSPR 137
G DP +G P P PPGP + E+ GS+ G RPG P P+
Sbjct: 687 GEKGDPGKDGVGQPGLPGPPGPPGPV--VYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPK 744
Query: 138 ---GSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARP 194
GS+ ERG SPG G +G G ++ G + GA+G +P R P P RP
Sbjct: 745 GNLGSKGERG--SPGPKGEKGEPG--SIFSPDGGALGPAQKGAKG-EPGFRGPPGPYGRP 799
Query: 195 STQ-----PGR--RPGLGRAASPLGPRGAGVTGAG 222
+ PGR RPG+ G G G G
Sbjct: 800 GYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 834
Score = 48.9 bits (115), Expect = 6e-06
Identities = 62/212 (29%), Positives = 71/212 (33%), Gaps = 40/212 (18%)
Query: 33 FLILGSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSR 92
F + G P P PGP P PP T ++ + VF+E+ PG GN P
Sbjct: 833 FGMRGMPGPPGP-PGP----PGPPGT--PVYDSNVFAESSRPGPPGL--PGNQGPPGPKG 883
Query: 93 LGGSRGPHPTLPPGPAGSLVFP------ERRGSLQDR-----LGRASRPGC--------- 132
G GP PGP G F E +G DR G PG
Sbjct: 884 AKGEVGP-----PGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLP 938
Query: 133 -PPSPRGSRQERGANSPGRSGARGCGGAAALQQEP-TNFRGRPRPGARGTDPPGRTLPAP 190
PP P G R G P RG G Q P + GR P PPG P
Sbjct: 939 GPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPG----PPGPPGPPS 994
Query: 191 LARPSTQPGRRPGLGRAASPLGPRGAGVTGAG 222
P Q PG P GP G +G
Sbjct: 995 FPGPHRQTISVPGPPGPPGPPGPPGTMGASSG 1026
Score = 47.0 bits (110), Expect = 2e-05
Identities = 64/214 (29%), Positives = 77/214 (35%), Gaps = 52/214 (24%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSR----LGGSRGPH- 100
PGP R P +T G E APG H G+ + PA +R L G+ GP
Sbjct: 540 PGPPGREGPPGRTGQK----GSLGEAGAPG---HKGSKGAPGPAGARGESGLAGAPGPAG 592
Query: 101 ------PTLPPGPAGSLVFPERRGS-------LQDRLGRASRPGCP--------PSPRGS 139
P PPGP F + GS + G PG P P G+
Sbjct: 593 PPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGA 652
Query: 140 RQERGANS-PGRSGARGCGGAAALQQEPTNFRG----RPRPGARGTDPPGRT----LPAP 190
+ E GA+ PG G G G A Q P RG + PG G PG P P
Sbjct: 653 KGEVGADGVPGFPGLPGREGIAG-PQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 711
Query: 191 LARPSTQPGR---------RPGLGRAASPLGPRG 215
+ S Q G RPG P GP+G
Sbjct: 712 VVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKG 745
Score = 41.2 bits (95), Expect = 0.001
Identities = 63/194 (32%), Positives = 72/194 (37%), Gaps = 38/194 (19%)
Query: 37 GSPLDRNPL-----PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHV---GAGNSSDP 88
G+P D P PG RGP PQ P G + T + G+G D
Sbjct: 426 GTPGDVGPKGDKGDPGVGERGPPGPQGPP-----GPPGPSFRHDKLTFIDMEGSGFGGD- 479
Query: 89 ATSRLGGSRG-PHPTLPPGPAGSLVFPERRG-SLQDRLGRASRPGCP-----------PS 135
L G RG P P PPG G P R G + D G A PG P P
Sbjct: 480 -LEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPG 538
Query: 136 PRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRP-GARG----TDPPGRTLPAP 190
P G G PGR+G +G G A + +G P P GARG PG P
Sbjct: 539 PPGPPGREGP--PGRTGQKGSLGEAGAPGHKGS-KGAPGPAGARGESGLAGAPGPAGPPG 595
Query: 191 LARPSTQPGRRPGL 204
P PG PGL
Sbjct: 596 PPGPPGPPG--PGL 607
Score = 39.3 bits (90), Expect = 0.005
Identities = 52/192 (27%), Positives = 69/192 (35%), Gaps = 35/192 (18%)
Query: 54 RPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS---RGPHP---TLPPGP 107
R PQ P L +++ + G G++ + G + R P P T PP
Sbjct: 227 RDPQVSPMHCLDEEGDDSDGASGDSGSGLGDARELLREETGAALKPRLPAPPPVTTPPLA 286
Query: 108 AGSLVFPERRGSLQDR-----LGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAAL 162
GS R ++++ LG + PG S S + +PG G GG
Sbjct: 287 GGSSTEDSRSEEVEEQTTVASLGAQTLPG---SDSVSTWDGSVRTPG--GRVKEGGLKGQ 341
Query: 163 QQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGA- 221
+ EP G P P R P LP P PGL SPLGP G +
Sbjct: 342 KGEP----GVPGPPGRAGPPGSPCLPGP-----------PGLPCPVSPLGPAGPALQTVP 386
Query: 222 ---GPATQGGRD 230
GP GRD
Sbjct: 387 GPQGPPGPPGRD 398
Score = 35.8 bits (81), Expect = 0.054
Identities = 57/215 (26%), Positives = 68/215 (31%), Gaps = 61/215 (28%)
Query: 45 LPGPE-RRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
+PGP R GP +P PG V + PA + G +GP
Sbjct: 347 VPGPPGRAGPPGSPCLPG-----------PPGLPCPVSPLGPAGPALQTVPGPQGP---- 391
Query: 104 PPGPAGSLVFPERRGSLQD--------RLGRASRPGCP--PSPRGSRQERGANSPGRSGA 153
PGP G P R G D G PG P P+G + + G G G
Sbjct: 392 -PGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGP 450
Query: 154 R-----------------------GCGGAAALQQEPTNFRGRP-RPGARG-TDPPGR--- 185
+ G GG + P F G P PG G PGR
Sbjct: 451 QGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGV 510
Query: 186 ---TLPAPLARPSTQPGRR--PGLGRAASPLGPRG 215
+P P P PGR PG P GP G
Sbjct: 511 NSSDVPGPAGLPGV-PGREGPPGFPGLPGPPGPPG 544
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 52.8 bits (125), Expect = 4e-07
Identities = 66/216 (30%), Positives = 77/216 (35%), Gaps = 48/216 (22%)
Query: 39 PLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA----GNSSDPATSRLG 94
P + P RGP P P G E PG G G +P + LG
Sbjct: 958 PAQKGAKGEPGFRGPPGPYGRP-----GYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLG 1012
Query: 95 -GSRG----PHPTLPPGPAGSLVFPERRGSLQDRLGRASRPG--CPPSPRGSRQERGANS 147
G RG P P PPGP G+ V+ + R G PG PP P+G++ E G
Sbjct: 1013 FGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPG 1072
Query: 148 P----------------GRSGARGCGGAAALQQEP--TNFRGRPRPGARGTDPPGRT--- 186
P G G RG G + EP F G PG G PPG
Sbjct: 1073 PPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPG--PPGPRGYP 1130
Query: 187 -LPAPLARP-STQPGRRPGLGRAASPLGPRGAGVTG 220
+P P QPG PG P GP G G G
Sbjct: 1131 GIPGPKGESIRGQPG-PPG------PQGPPGIGYEG 1159
Score = 49.7 bits (117), Expect = 4e-06
Identities = 50/155 (32%), Positives = 64/155 (41%), Gaps = 22/155 (14%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGC-----PPSPR 137
G DP +G P P PPGP + E+ GS+ G RPG P P+
Sbjct: 867 GEKGDPGKDGVGQPGLPGPPGPPGPV--VYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPK 924
Query: 138 ---GSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARP 194
GS+ ERG SPG G +G G ++ G + GA+G +P R P P RP
Sbjct: 925 GNLGSKGERG--SPGPKGEKGEPG--SIFSPDGGALGPAQKGAKG-EPGFRGPPGPYGRP 979
Query: 195 STQ-----PGR--RPGLGRAASPLGPRGAGVTGAG 222
+ PGR RPG+ G G G G
Sbjct: 980 GYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 1014
Score = 48.9 bits (115), Expect = 6e-06
Identities = 62/212 (29%), Positives = 71/212 (33%), Gaps = 40/212 (18%)
Query: 33 FLILGSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSR 92
F + G P P PGP P PP T ++ + VF+E+ PG GN P
Sbjct: 1013 FGMRGMPGPPGP-PGP----PGPPGT--PVYDSNVFAESSRPGPPGL--PGNQGPPGPKG 1063
Query: 93 LGGSRGPHPTLPPGPAGSLVFP------ERRGSLQDR-----LGRASRPGC--------- 132
G GP PGP G F E +G DR G PG
Sbjct: 1064 AKGEVGP-----PGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLP 1118
Query: 133 -PPSPRGSRQERGANSPGRSGARGCGGAAALQQEP-TNFRGRPRPGARGTDPPGRTLPAP 190
PP P G R G P RG G Q P + GR P PPG P
Sbjct: 1119 GPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPG----PPGPPGPPS 1174
Query: 191 LARPSTQPGRRPGLGRAASPLGPRGAGVTGAG 222
P Q PG P GP G +G
Sbjct: 1175 FPGPHRQTISVPGPPGPPGPPGPPGTMGASSG 1206
Score = 47.0 bits (110), Expect = 2e-05
Identities = 64/214 (29%), Positives = 77/214 (35%), Gaps = 52/214 (24%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSR----LGGSRGPH- 100
PGP R P +T G E APG H G+ + PA +R L G+ GP
Sbjct: 720 PGPPGREGPPGRTGQK----GSLGEAGAPG---HKGSKGAPGPAGARGESGLAGAPGPAG 772
Query: 101 ------PTLPPGPAGSLVFPERRGS-------LQDRLGRASRPGCP--------PSPRGS 139
P PPGP F + GS + G PG P P G+
Sbjct: 773 PPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGA 832
Query: 140 RQERGANS-PGRSGARGCGGAAALQQEPTNFRG----RPRPGARGTDPPGRT----LPAP 190
+ E GA+ PG G G G A Q P RG + PG G PG P P
Sbjct: 833 KGEVGADGVPGFPGLPGREGIAG-PQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 891
Query: 191 LARPSTQPGR---------RPGLGRAASPLGPRG 215
+ S Q G RPG P GP+G
Sbjct: 892 VVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKG 925
Score = 41.2 bits (95), Expect = 0.001
Identities = 63/194 (32%), Positives = 72/194 (37%), Gaps = 38/194 (19%)
Query: 37 GSPLDRNPL-----PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHV---GAGNSSDP 88
G+P D P PG RGP PQ P G + T + G+G D
Sbjct: 606 GTPGDVGPKGDKGDPGVGERGPPGPQGPP-----GPPGPSFRHDKLTFIDMEGSGFGGD- 659
Query: 89 ATSRLGGSRG-PHPTLPPGPAGSLVFPERRG-SLQDRLGRASRPGCP-----------PS 135
L G RG P P PPG G P R G + D G A PG P P
Sbjct: 660 -LEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPG 718
Query: 136 PRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRP-GARG----TDPPGRTLPAP 190
P G G PGR+G +G G A + +G P P GARG PG P
Sbjct: 719 PPGPPGREGP--PGRTGQKGSLGEAGAPGHKGS-KGAPGPAGARGESGLAGAPGPAGPPG 775
Query: 191 LARPSTQPGRRPGL 204
P PG PGL
Sbjct: 776 PPGPPGPPG--PGL 787
Score = 39.3 bits (90), Expect = 0.005
Identities = 52/192 (27%), Positives = 69/192 (35%), Gaps = 35/192 (18%)
Query: 54 RPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS---RGPHP---TLPPGP 107
R PQ P L +++ + G G++ + G + R P P T PP
Sbjct: 407 RDPQVSPMHCLDEEGDDSDGASGDSGSGLGDARELLREETGAALKPRLPAPPPVTTPPLA 466
Query: 108 AGSLVFPERRGSLQDR-----LGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAAL 162
GS R ++++ LG + PG S S + +PG G GG
Sbjct: 467 GGSSTEDSRSEEVEEQTTVASLGAQTLPG---SDSVSTWDGSVRTPG--GRVKEGGLKGQ 521
Query: 163 QQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGA- 221
+ EP G P P R P LP P PGL SPLGP G +
Sbjct: 522 KGEP----GVPGPPGRAGPPGSPCLPGP-----------PGLPCPVSPLGPAGPALQTVP 566
Query: 222 ---GPATQGGRD 230
GP GRD
Sbjct: 567 GPQGPPGPPGRD 578
Score = 35.8 bits (81), Expect = 0.054
Identities = 57/215 (26%), Positives = 68/215 (31%), Gaps = 61/215 (28%)
Query: 45 LPGPE-RRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
+PGP R GP +P PG V + PA + G +GP
Sbjct: 527 VPGPPGRAGPPGSPCLPG-----------PPGLPCPVSPLGPAGPALQTVPGPQGP---- 571
Query: 104 PPGPAGSLVFPERRGSLQD--------RLGRASRPGCP--PSPRGSRQERGANSPGRSGA 153
PGP G P R G D G PG P P+G + + G G G
Sbjct: 572 -PGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGP 630
Query: 154 R-----------------------GCGGAAALQQEPTNFRGRP-RPGARG-TDPPGR--- 185
+ G GG + P F G P PG G PGR
Sbjct: 631 QGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGV 690
Query: 186 ---TLPAPLARPSTQPGRR--PGLGRAASPLGPRG 215
+P P P PGR PG P GP G
Sbjct: 691 NSSDVPGPAGLPGV-PGREGPPGFPGLPGPPGPPG 724
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 52.8 bits (125), Expect = 4e-07
Identities = 65/210 (30%), Positives = 76/210 (36%), Gaps = 50/210 (23%)
Query: 39 PLDRNPLPGP-ERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGS 96
P N PGP +RGP AG +PGS G G DP G
Sbjct: 1221 PTGENGPPGPLGKRGP-----------AG------SPGSEGRQGGKGAKGDPGAIGAPGK 1263
Query: 97 RGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGC-----PPSPRGSRQERGANSPGRS 151
GP P GPAG P+ L +G+ RPG PP P G PG
Sbjct: 1264 TGP--VGPAGPAGK-PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGP--------PGLP 1312
Query: 152 GARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQ-------------P 198
G RG GA + P PG +G + R LP P P + P
Sbjct: 1313 GLRGDAGAKGEKGHPGLIGLIGPPGEQG-EKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1371
Query: 199 GRRPGLGRAASPLGPRGAGVTGAGPATQGG 228
G PGL A P G +GA G GP + G
Sbjct: 1372 GGPPGLPGPAGPKGAKGATGPG-GPKGEKG 1400
Score = 50.1 bits (118), Expect = 3e-06
Identities = 65/210 (30%), Positives = 74/210 (35%), Gaps = 39/210 (18%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPP 105
PGP GP P P AG E A G H GA D T G PP
Sbjct: 1021 PGPP--GPIGPVGQPGA--AGADGEPGARGPQGHFGA--KGDEGTRGFNG--------PP 1066
Query: 106 GPAGSLVFPERRGSLQDR--LGRASRPGCPPSPRGSRQERGANS-------------PGR 150
GP G P G + +G PG PP PRG GA+ PG
Sbjct: 1067 GPIGLQGLPGPSGEKGETGDVGPMGPPG-PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1125
Query: 151 SGARGCGGAAALQQEPTNFRGRPRPGARG-TDPPGRTLPAPLARPSTQPGRRPGLGRAAS 209
G G G+ +Q EP R G +G + PG P P+ G + G
Sbjct: 1126 KGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGF 1185
Query: 210 P--LGPRGAGVTGAGPATQGGR--DRGRWG 235
P GP G G GP Q G DRG G
Sbjct: 1186 PGDPGPPGEG----GPRGQDGAKGDRGEDG 1211
Score = 42.4 bits (98), Expect = 6e-04
Identities = 66/260 (25%), Positives = 86/260 (33%), Gaps = 78/260 (30%)
Query: 41 DRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPH 100
+R P +RGPR G ++ A G+S G G P L G +GP+
Sbjct: 753 ERGPTGPRGQRGPR-----------GATGKSGAKGTSG--GDGPHGPPGERGLPGPQGPN 799
Query: 101 ----PTLPPGPAGSLVFPERRGS-----LQDRLGRASRPGC------------------- 132
P PPGP G P G Q + G PG
Sbjct: 800 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHP 859
Query: 133 -PPSPRGSRQERGA-------------NSPGRSGARGCGGAAALQQEPTNFRGRPRPGAR 178
PP P G + G +PG+ G G G + P G PG +
Sbjct: 860 GPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG---PGLK 916
Query: 179 GTD----PPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGR----D 230
G + PPG P+ PG R G + P+GP G P G + +
Sbjct: 917 GNEGPSGPPG---------PAGSPGER-GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE 966
Query: 231 RGRWGRWVRRRV--PCPLPG 248
+G G R V P LPG
Sbjct: 967 KGPIGPTGRDGVQGPVGLPG 986
Score = 40.8 bits (94), Expect = 0.002
Identities = 55/193 (28%), Positives = 66/193 (34%), Gaps = 49/193 (25%)
Query: 66 GVFSETEAPGSSTHVGA----GNSSDPATSRLGGSRGPH----PTLPPGPAGSLVFPERR 117
G E PG +G G P + G GP PT PGP G
Sbjct: 650 GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG-------- 701
Query: 118 GSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAAL--------QQEPTNF 169
L G+ PG P P + PG GA G GA L ++ PT
Sbjct: 702 --LMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGP 759
Query: 170 RGRPRP-------GARGTD-------PPG-RTLPAPLARPSTQPGRRPGLGRAASPLGPR 214
RG+ P GA+GT PPG R LP P P+ PG + P GP
Sbjct: 760 RGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG-PNGFPGPK-------GPPGPP 811
Query: 215 GAGVTGAGPATQG 227
G P +G
Sbjct: 812 GKDGLPGHPGQRG 824
Score = 40.4 bits (93), Expect = 0.002
Identities = 65/221 (29%), Positives = 76/221 (34%), Gaps = 51/221 (23%)
Query: 45 LPGPER----RGPRPPQTIPTLFLAGVFSETEAPGSSTHVG-AGNSSDPATSRLGGSRGP 99
LPGP+ G + PQ P L PGS G G P T G++GP
Sbjct: 573 LPGPQGAIGPHGEKGPQGKPGL--------PGMPGSDGPPGHPGKEGPPGTK---GNQGP 621
Query: 100 HPTLPPGPAGSLVFPERRG--------SLQDRLGRASRPGCP--------------PSPR 137
GP G L +P RG L+ G G P
Sbjct: 622 S-----GPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVP 676
Query: 138 GSRQERGANSP-GRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAP-LARPS 195
GSR E G P GR+G G G L E PG G P +L P S
Sbjct: 677 GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGAS 736
Query: 196 TQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGR 236
+ G R GL + P G RG GP Q G RG G+
Sbjct: 737 GEKGAR-GLSGKSGPRGERGP----TGPRGQRG-PRGATGK 771
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 52.8 bits (125), Expect = 4e-07
Identities = 65/210 (30%), Positives = 76/210 (36%), Gaps = 50/210 (23%)
Query: 39 PLDRNPLPGP-ERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGS 96
P N PGP +RGP AG +PGS G G DP G
Sbjct: 1200 PTGENGPPGPLGKRGP-----------AG------SPGSEGRQGGKGAKGDPGAIGAPGK 1242
Query: 97 RGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGC-----PPSPRGSRQERGANSPGRS 151
GP P GPAG P+ L +G+ RPG PP P G PG
Sbjct: 1243 TGP--VGPAGPAGK-PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGP--------PGLP 1291
Query: 152 GARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQ-------------P 198
G RG GA + P PG +G + R LP P P + P
Sbjct: 1292 GLRGDAGAKGEKGHPGLIGLIGPPGEQG-EKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1350
Query: 199 GRRPGLGRAASPLGPRGAGVTGAGPATQGG 228
G PGL A P G +GA G GP + G
Sbjct: 1351 GGPPGLPGPAGPKGAKGATGPG-GPKGEKG 1379
Score = 50.1 bits (118), Expect = 3e-06
Identities = 65/210 (30%), Positives = 74/210 (35%), Gaps = 39/210 (18%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPP 105
PGP GP P P AG E A G H GA D T G PP
Sbjct: 1000 PGPP--GPIGPVGQPGA--AGADGEPGARGPQGHFGA--KGDEGTRGFNG--------PP 1045
Query: 106 GPAGSLVFPERRGSLQDR--LGRASRPGCPPSPRGSRQERGANS-------------PGR 150
GP G P G + +G PG PP PRG GA+ PG
Sbjct: 1046 GPIGLQGLPGPSGEKGETGDVGPMGPPG-PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1104
Query: 151 SGARGCGGAAALQQEPTNFRGRPRPGARG-TDPPGRTLPAPLARPSTQPGRRPGLGRAAS 209
G G G+ +Q EP R G +G + PG P P+ G + G
Sbjct: 1105 KGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGF 1164
Query: 210 P--LGPRGAGVTGAGPATQGGR--DRGRWG 235
P GP G G GP Q G DRG G
Sbjct: 1165 PGDPGPPGEG----GPRGQDGAKGDRGEDG 1190
Score = 42.4 bits (98), Expect = 6e-04
Identities = 66/260 (25%), Positives = 86/260 (33%), Gaps = 78/260 (30%)
Query: 41 DRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPH 100
+R P +RGPR G ++ A G+S G G P L G +GP+
Sbjct: 732 ERGPTGPRGQRGPR-----------GATGKSGAKGTSG--GDGPHGPPGERGLPGPQGPN 778
Query: 101 ----PTLPPGPAGSLVFPERRGS-----LQDRLGRASRPGC------------------- 132
P PPGP G P G Q + G PG
Sbjct: 779 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHP 838
Query: 133 -PPSPRGSRQERGA-------------NSPGRSGARGCGGAAALQQEPTNFRGRPRPGAR 178
PP P G + G +PG+ G G G + P G PG +
Sbjct: 839 GPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG---PGLK 895
Query: 179 GTD----PPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGR----D 230
G + PPG P+ PG R G + P+GP G P G + +
Sbjct: 896 GNEGPSGPPG---------PAGSPGER-GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE 945
Query: 231 RGRWGRWVRRRV--PCPLPG 248
+G G R V P LPG
Sbjct: 946 KGPIGPTGRDGVQGPVGLPG 965
Score = 40.8 bits (94), Expect = 0.002
Identities = 55/193 (28%), Positives = 66/193 (34%), Gaps = 49/193 (25%)
Query: 66 GVFSETEAPGSSTHVGA----GNSSDPATSRLGGSRGPH----PTLPPGPAGSLVFPERR 117
G E PG +G G P + G GP PT PGP G
Sbjct: 629 GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG-------- 680
Query: 118 GSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAAL--------QQEPTNF 169
L G+ PG P P + PG GA G GA L ++ PT
Sbjct: 681 --LMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGP 738
Query: 170 RGRPRP-------GARGTD-------PPG-RTLPAPLARPSTQPGRRPGLGRAASPLGPR 214
RG+ P GA+GT PPG R LP P P+ PG + P GP
Sbjct: 739 RGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG-PNGFPGPK-------GPPGPP 790
Query: 215 GAGVTGAGPATQG 227
G P +G
Sbjct: 791 GKDGLPGHPGQRG 803
Score = 40.4 bits (93), Expect = 0.002
Identities = 65/221 (29%), Positives = 76/221 (34%), Gaps = 51/221 (23%)
Query: 45 LPGPER----RGPRPPQTIPTLFLAGVFSETEAPGSSTHVG-AGNSSDPATSRLGGSRGP 99
LPGP+ G + PQ P L PGS G G P T G++GP
Sbjct: 552 LPGPQGAIGPHGEKGPQGKPGL--------PGMPGSDGPPGHPGKEGPPGTK---GNQGP 600
Query: 100 HPTLPPGPAGSLVFPERRG--------SLQDRLGRASRPGCP--------------PSPR 137
GP G L +P RG L+ G G P
Sbjct: 601 S-----GPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVP 655
Query: 138 GSRQERGANSP-GRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAP-LARPS 195
GSR E G P GR+G G G L E PG G P +L P S
Sbjct: 656 GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGAS 715
Query: 196 TQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGR 236
+ G R GL + P G RG GP Q G RG G+
Sbjct: 716 GEKGAR-GLSGKSGPRGERGP----TGPRGQRG-PRGATGK 750
Score = 28.5 bits (62), Expect = 8.6
Identities = 34/114 (29%), Positives = 38/114 (33%), Gaps = 19/114 (16%)
Query: 134 PSPRGSRQERGANS-PGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLA 192
P + SR R N P A G G + EP PG PPG PA L
Sbjct: 248 PQQQPSRLHRPQNQEPQSQAAHGPRGLKGEKGEPAVLE----PGMLVEGPPGPEGPAGLI 303
Query: 193 RPS---------TQPGRRPGLGRAASP-----LGPRGAGVTGAGPATQGGRDRG 232
P PG R GRA P GP G + GG D+G
Sbjct: 304 GPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKG 357
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 52.8 bits (125), Expect = 4e-07
Identities = 65/210 (30%), Positives = 76/210 (36%), Gaps = 50/210 (23%)
Query: 39 PLDRNPLPGP-ERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGS 96
P N PGP +RGP AG +PGS G G DP G
Sbjct: 1307 PTGENGPPGPLGKRGP-----------AG------SPGSEGRQGGKGAKGDPGAIGAPGK 1349
Query: 97 RGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGC-----PPSPRGSRQERGANSPGRS 151
GP P GPAG P+ L +G+ RPG PP P G PG
Sbjct: 1350 TGP--VGPAGPAGK-PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGP--------PGLP 1398
Query: 152 GARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQ-------------P 198
G RG GA + P PG +G + R LP P P + P
Sbjct: 1399 GLRGDAGAKGEKGHPGLIGLIGPPGEQG-EKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1457
Query: 199 GRRPGLGRAASPLGPRGAGVTGAGPATQGG 228
G PGL A P G +GA G GP + G
Sbjct: 1458 GGPPGLPGPAGPKGAKGATGPG-GPKGEKG 1486
Score = 50.1 bits (118), Expect = 3e-06
Identities = 65/210 (30%), Positives = 74/210 (35%), Gaps = 39/210 (18%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPP 105
PGP GP P P AG E A G H GA D T G PP
Sbjct: 1107 PGPP--GPIGPVGQPGA--AGADGEPGARGPQGHFGA--KGDEGTRGFNG--------PP 1152
Query: 106 GPAGSLVFPERRGSLQDR--LGRASRPGCPPSPRGSRQERGANS-------------PGR 150
GP G P G + +G PG PP PRG GA+ PG
Sbjct: 1153 GPIGLQGLPGPSGEKGETGDVGPMGPPG-PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1211
Query: 151 SGARGCGGAAALQQEPTNFRGRPRPGARG-TDPPGRTLPAPLARPSTQPGRRPGLGRAAS 209
G G G+ +Q EP R G +G + PG P P+ G + G
Sbjct: 1212 KGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGF 1271
Query: 210 P--LGPRGAGVTGAGPATQGGR--DRGRWG 235
P GP G G GP Q G DRG G
Sbjct: 1272 PGDPGPPGEG----GPRGQDGAKGDRGEDG 1297
Score = 42.4 bits (98), Expect = 6e-04
Identities = 66/260 (25%), Positives = 86/260 (33%), Gaps = 78/260 (30%)
Query: 41 DRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPH 100
+R P +RGPR G ++ A G+S G G P L G +GP+
Sbjct: 839 ERGPTGPRGQRGPR-----------GATGKSGAKGTSG--GDGPHGPPGERGLPGPQGPN 885
Query: 101 ----PTLPPGPAGSLVFPERRGS-----LQDRLGRASRPGC------------------- 132
P PPGP G P G Q + G PG
Sbjct: 886 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHP 945
Query: 133 -PPSPRGSRQERGA-------------NSPGRSGARGCGGAAALQQEPTNFRGRPRPGAR 178
PP P G + G +PG+ G G G + P G PG +
Sbjct: 946 GPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG---PGLK 1002
Query: 179 GTD----PPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGR----D 230
G + PPG P+ PG R G + P+GP G P G + +
Sbjct: 1003 GNEGPSGPPG---------PAGSPGER-GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE 1052
Query: 231 RGRWGRWVRRRV--PCPLPG 248
+G G R V P LPG
Sbjct: 1053 KGPIGPTGRDGVQGPVGLPG 1072
Score = 40.8 bits (94), Expect = 0.002
Identities = 55/193 (28%), Positives = 66/193 (34%), Gaps = 49/193 (25%)
Query: 66 GVFSETEAPGSSTHVGA----GNSSDPATSRLGGSRGPH----PTLPPGPAGSLVFPERR 117
G E PG +G G P + G GP PT PGP G
Sbjct: 736 GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG-------- 787
Query: 118 GSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAAL--------QQEPTNF 169
L G+ PG P P + PG GA G GA L ++ PT
Sbjct: 788 --LMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGP 845
Query: 170 RGRPRP-------GARGTD-------PPG-RTLPAPLARPSTQPGRRPGLGRAASPLGPR 214
RG+ P GA+GT PPG R LP P P+ PG + P GP
Sbjct: 846 RGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG-PNGFPGPK-------GPPGPP 897
Query: 215 GAGVTGAGPATQG 227
G P +G
Sbjct: 898 GKDGLPGHPGQRG 910
Score = 40.4 bits (93), Expect = 0.002
Identities = 65/221 (29%), Positives = 76/221 (34%), Gaps = 51/221 (23%)
Query: 45 LPGPER----RGPRPPQTIPTLFLAGVFSETEAPGSSTHVG-AGNSSDPATSRLGGSRGP 99
LPGP+ G + PQ P L PGS G G P T G++GP
Sbjct: 659 LPGPQGAIGPHGEKGPQGKPGL--------PGMPGSDGPPGHPGKEGPPGTK---GNQGP 707
Query: 100 HPTLPPGPAGSLVFPERRG--------SLQDRLGRASRPGCP--------------PSPR 137
GP G L +P RG L+ G G P
Sbjct: 708 S-----GPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVP 762
Query: 138 GSRQERGANSP-GRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAP-LARPS 195
GSR E G P GR+G G G L E PG G P +L P S
Sbjct: 763 GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGAS 822
Query: 196 TQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGR 236
+ G R GL + P G RG GP Q G RG G+
Sbjct: 823 GEKGAR-GLSGKSGPRGERGP----TGPRGQRG-PRGATGK 857
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 52.8 bits (125), Expect = 4e-07
Identities = 58/205 (28%), Positives = 72/205 (35%), Gaps = 54/205 (26%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG------- 98
PGP RGP P +P + G+ + PG + G G P G+ G
Sbjct: 126 PGP--RGPPGPPGLPGHGIPGIKGK---PGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGE 180
Query: 99 ------------PHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCP--PSPRGSRQERG 144
P P PPGP G +G+ PG P P P+G R +G
Sbjct: 181 IGQKGEIGPMGIPGPQGPPGPHGL-----------PGIGKPGGPGLPGQPGPKGDRGPKG 229
Query: 145 ANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGT-DPPG-RTLPAPLARPSTQPGRRP 202
PG G RG P +G PGA G PPG P P+ P +P
Sbjct: 230 L--PGPQGLRG----------PKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGV---GKP 274
Query: 203 GLGRAASPLGPRGAGVTGAGPATQG 227
G+ P GP G P QG
Sbjct: 275 GVTGFPGPQGPLGKPGAPGEPGPQG 299
Score = 50.4 bits (119), Expect = 2e-06
Identities = 62/200 (31%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
Query: 41 DRNP--LPGPER-RGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSR 97
DR P LPGP+ RGP+ + GV G VG P + G +
Sbjct: 224 DRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQ 283
Query: 98 GP--HPTLP--PGPAGSLVFPERRGSLQ----DRLGRASRPGCPPSPRGSRQERGANSPG 149
GP P P PGP G + P +G + G+ PG P P G ++ PG
Sbjct: 284 GPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPG 343
Query: 150 RSGARGCGGAAALQQEPTNFRGRPR-PGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAA 208
G G G P RG PGA G P G P PG PGL
Sbjct: 344 PPGLPGIGKPGF--PGPKGDRGMGGVPGALG--PRGEKGPIGAPGIGGPPGE-PGLPGIP 398
Query: 209 SPLGPRGAGVTGAGPATQGG 228
P+GP GA + GP +GG
Sbjct: 399 GPMGPPGA-IGFPGPKGEGG 417
Score = 42.0 bits (97), Expect = 8e-04
Identities = 45/164 (27%), Positives = 61/164 (37%), Gaps = 26/164 (15%)
Query: 64 LAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQD 122
+ GV G +GA G P L G GP GP G++ FP +G
Sbjct: 364 MGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPM-----GPPGAIGFPGPKGE--- 415
Query: 123 RLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDP 182
G P PP P+G +G PG+ G G G ++ P + G +G
Sbjct: 416 --GGIVGPQGPPGPKGEPGLQGF--PGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGV-- 469
Query: 183 PGRTLPAPLARPSTQPGRR-----------PGLGRAASPLGPRG 215
PG L P +PG PG+G + P+GP G
Sbjct: 470 PGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPG 513
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 52.8 bits (125), Expect = 4e-07
Identities = 58/205 (28%), Positives = 72/205 (35%), Gaps = 54/205 (26%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG------- 98
PGP RGP P +P + G+ + PG + G G P G+ G
Sbjct: 126 PGP--RGPPGPPGLPGHGIPGIKGK---PGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGE 180
Query: 99 ------------PHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCP--PSPRGSRQERG 144
P P PPGP G +G+ PG P P P+G R +G
Sbjct: 181 IGQKGEIGPMGIPGPQGPPGPHGL-----------PGIGKPGGPGLPGQPGPKGDRGPKG 229
Query: 145 ANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGT-DPPG-RTLPAPLARPSTQPGRRP 202
PG G RG P +G PGA G PPG P P+ P +P
Sbjct: 230 L--PGPQGLRG----------PKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGV---GKP 274
Query: 203 GLGRAASPLGPRGAGVTGAGPATQG 227
G+ P GP G P QG
Sbjct: 275 GVTGFPGPQGPLGKPGAPGEPGPQG 299
Score = 50.4 bits (119), Expect = 2e-06
Identities = 62/200 (31%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
Query: 41 DRNP--LPGPER-RGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSR 97
DR P LPGP+ RGP+ + GV G VG P + G +
Sbjct: 224 DRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQ 283
Query: 98 GP--HPTLP--PGPAGSLVFPERRGSLQ----DRLGRASRPGCPPSPRGSRQERGANSPG 149
GP P P PGP G + P +G + G+ PG P P G ++ PG
Sbjct: 284 GPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPG 343
Query: 150 RSGARGCGGAAALQQEPTNFRGRPR-PGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAA 208
G G G P RG PGA G P G P PG PGL
Sbjct: 344 PPGLPGIGKPGF--PGPKGDRGMGGVPGALG--PRGEKGPIGAPGIGGPPGE-PGLPGIP 398
Query: 209 SPLGPRGAGVTGAGPATQGG 228
P+GP GA + GP +GG
Sbjct: 399 GPMGPPGA-IGFPGPKGEGG 417
Score = 42.0 bits (97), Expect = 8e-04
Identities = 45/164 (27%), Positives = 61/164 (37%), Gaps = 26/164 (15%)
Query: 64 LAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQD 122
+ GV G +GA G P L G GP GP G++ FP +G
Sbjct: 364 MGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPM-----GPPGAIGFPGPKGE--- 415
Query: 123 RLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDP 182
G P PP P+G +G PG+ G G G ++ P + G +G
Sbjct: 416 --GGIVGPQGPPGPKGEPGLQGF--PGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGV-- 469
Query: 183 PGRTLPAPLARPSTQPGRR-----------PGLGRAASPLGPRG 215
PG L P +PG PG+G + P+GP G
Sbjct: 470 PGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPG 513
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 51.6 bits (122), Expect = 1e-06
Identities = 74/249 (29%), Positives = 83/249 (33%), Gaps = 74/249 (29%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
GSP P P RGPR P+ P G E PG G DP S G
Sbjct: 1326 GSPGLPGPRGDPGERGPRGPKGEPG--APGQVIGGEGPGL-----PGRKGDPGPSGPPGP 1378
Query: 97 RG----PHPTLPPGPAGSLVFPERRGSLQDR--------------LGRASRPGCPPS--- 135
RG P P PPG G+ + +G DR G PG P S
Sbjct: 1379 RGPLGDPGPRGPPGLPGTAM----KGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGP 1434
Query: 136 -----PRGSRQERG------------ANSPGRSGARGCGGAAALQQEPTNFRGRPRP--- 175
P G + E+G SPG G RG GA P RG P P
Sbjct: 1435 QGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIG----PKGDRGFPGPLGE 1490
Query: 176 ----GARGTDPPG----RTLPAPLARPSTQ--------PGRRPGLGRAASPLGPRGAGVT 219
G RG PPG R LP RP + GR+ G P P G
Sbjct: 1491 AGEKGERG--PPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPA 1548
Query: 220 GAGPATQGG 228
AGP + G
Sbjct: 1549 VAGPKGEKG 1557
Score = 47.8 bits (112), Expect = 1e-05
Identities = 72/252 (28%), Positives = 85/252 (33%), Gaps = 62/252 (24%)
Query: 45 LPGPERR-GPR--------PPQTIPTLFLA--GVFSETEAPGSSTHVGA--GNSSDPATS 91
LP PERR GP+ P + P F G+ + PG G G P S
Sbjct: 1971 LPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPS 2030
Query: 92 RLGGSRGPHPTLP--PGPAGSLVFPERRGSLQDR--------LGRASRPGCP-----PSP 136
L G G P +P PG AG + R G +R GR PG P P P
Sbjct: 2031 GLAGEPGK-PGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGP 2089
Query: 137 RGSRQERGANSPGRSGARGCGGAAALQ--------QEPTNFRGRP-------RPGARGTD 181
G + PG SG +G G + Q P RG P PG RG D
Sbjct: 2090 PGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQD 2149
Query: 182 -----PPGRTLPAPLARPSTQPGR-------------RPGLGRAASPLGPRGAGVTGAGP 223
P R + P +P Q R PG A P GP+G P
Sbjct: 2150 GNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEP 2209
Query: 224 ATQGGRDRGRWG 235
G RG G
Sbjct: 2210 GETGPPGRGLTG 2221
Score = 47.8 bits (112), Expect = 1e-05
Identities = 57/203 (28%), Positives = 74/203 (36%), Gaps = 32/203 (15%)
Query: 36 LGSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGG 95
+G D P P GP PQ G PG + G G + L G
Sbjct: 2179 VGGHGDPGPPGAPGLAGPAGPQ--------GPSGLKGEPGETGPPGRGLTGPTGAVGLPG 2230
Query: 96 SRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERGANSPGRSGARG 155
PPGP+G LV P+ L ++G +PG P S ++ SPG G+ G
Sbjct: 2231 --------PPGPSG-LVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPG 2281
Query: 156 CGGAAALQQE--PTNFRGRP---RPGARG-TDPPGRTLPAPLARPSTQ--------PGRR 201
G + E PT G+ PGA+G PG + P + G +
Sbjct: 2282 LPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEK 2341
Query: 202 PGLGRAASPLGPRGAGVTGA-GP 223
GRA P P G GA GP
Sbjct: 2342 GEAGRAGEPGDPGEDGQKGAPGP 2364
Score = 46.2 bits (108), Expect = 4e-05
Identities = 82/273 (30%), Positives = 93/273 (34%), Gaps = 78/273 (28%)
Query: 36 LGSPLDRNPLPGPER-RGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRL 93
L P LPGP G PQ P L G ET PG+ GA G D + +
Sbjct: 2219 LTGPTGAVGLPGPPGPSGLVGPQGSPGL--PGQVGETGKPGAPGRDGASGKDGDRGSPGV 2276
Query: 94 GGSRG----------PHPTLPPGPA------------------GSLV----------FPE 115
GS G P PT PG A G LV P
Sbjct: 2277 PGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPG 2336
Query: 116 RRGSLQDRLGRASRPGCP--------PSPRGSRQERGA---NSPGRSGARGCGGAAAL-- 162
RG + GRA PG P P P+G + + G SPG G G G L
Sbjct: 2337 PRGE-KGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPG 2395
Query: 163 ------------QQEPTNFRGRPRP-GARG-TDPPGRT-LPAPLARPSTQPGR--RPGLG 205
Q P G+P P G RG PPGR +P PL P PG PG
Sbjct: 2396 LPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPG-PPGSVGPPGAS 2454
Query: 206 RAASPLGPRGAGVTGAGPATQGGRD--RGRWGR 236
G G G+ GP + G RG GR
Sbjct: 2455 GLKGDKGDPGVGL--PGPRGERGEPGIRGEDGR 2485
Score = 44.7 bits (104), Expect = 1e-04
Identities = 69/234 (29%), Positives = 81/234 (34%), Gaps = 41/234 (17%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPH---- 100
PGP P PP L L G+ G G G P S G GP
Sbjct: 2379 PGP----PGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREG 2434
Query: 101 ---PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCP-PSPRGSRQERGANS----PGRSG 152
P PPGP GS+ P G D+ PG P PRG R E G PG+ G
Sbjct: 2435 IPGPLGPPGPPGSVGPPGASGLKGDK----GDPGVGLPGPRGERGEPGIRGEDGRPGQEG 2490
Query: 153 ARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLG 212
RG G + E G +G + P PG A +G
Sbjct: 2491 PRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGP-----------PGPRGAKGDMG 2539
Query: 213 PRG-AGVTG-AGPATQGG--RDRGRWGRWVRRRVPCPLPGLR----PHERAGAA 258
RG G+ G GP G D+G G + LPGLR P + GAA
Sbjct: 2540 ERGPRGLDGDKGPRGDNGDPGDKGSKGE-PGDKGSAGLPGLRGLLGPQGQPGAA 2592
Score = 43.5 bits (101), Expect = 3e-04
Identities = 68/234 (29%), Positives = 82/234 (35%), Gaps = 48/234 (20%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLF- 63
GP+G P A RG+ R G P R P RGP P L
Sbjct: 1731 GPKGDPGL-----PGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGP------PGLDG 1779
Query: 64 LAGVFSETEAPGSSTHVGA-GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQD 122
+G+ + A G S GA G + DP L G RG PGP+G P + G
Sbjct: 1780 RSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGL--PGPSGPPGLPGKPGE-DG 1836
Query: 123 RLGRASRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDP 182
+ G + G P P GR G +G GA+ G G D
Sbjct: 1837 KPGLNGKNGEPGDP---------GEDGRKGEKGDSGAS---------------GREGRDG 1872
Query: 183 PGRTLPAP-LARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWG 235
P AP + P PG PG P+GP G G G T DRG G
Sbjct: 1873 PKGERGAPGILGPQGPPGL-PG------PVGPPGQGFPGVPGGTGPKGDRGETG 1919
Score = 43.1 bits (100), Expect = 3e-04
Identities = 54/179 (30%), Positives = 61/179 (34%), Gaps = 29/179 (16%)
Query: 83 GNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQE 142
G +P L G GP PG G P R G A P PP ++ E
Sbjct: 1254 GQKGEPGEMGLRGQVGP-----PGDPG---LPGRTG--------APGPQGPPGSATAKGE 1297
Query: 143 RG-------ANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAP----L 191
RG SPGR+G G GA L+ P R PG RG P AP
Sbjct: 1298 RGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIG 1357
Query: 192 ARPSTQPGRR--PGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRRRVPCPLPG 248
PGR+ PG P GP G P G +G G R P P G
Sbjct: 1358 GEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEG 1416
Score = 39.7 bits (91), Expect = 0.004
Identities = 43/144 (29%), Positives = 53/144 (36%), Gaps = 19/144 (13%)
Query: 74 PGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDR--LGRASRPG 131
PG + H G +P G+ G + GP G F + G D+ G PG
Sbjct: 2652 PGLAGH--KGEMGEPGVPGQSGAPGKEGLI--GPKGDRGFDGQPGPKGDQGEKGERGTPG 2707
Query: 132 CPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPL 191
P S + A PG G+ G G LQ + G RG PPG +
Sbjct: 2708 IGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQ---------KGERG--PPGERVVGAP 2756
Query: 192 ARPSTQPGRRPGLGRAASPLGPRG 215
P PG R GR P GPRG
Sbjct: 2757 GVPGA-PGERGEQGR-PGPAGPRG 2778
Score = 39.7 bits (91), Expect = 0.004
Identities = 33/92 (35%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 83 GNSSDPATSRLGGSRGPH----PTLPPGPAGSLVFPERRGSLQDRLGRASRPG----CPP 134
G + T +GG GP PPGP GS V P LQ + G PG P
Sbjct: 2698 GEKGERGTPGIGGFPGPSGNDGSAGPPGPPGS-VGPRGPEGLQGQKGERGPPGERVVGAP 2756
Query: 135 SPRGSRQERGANS-PGRSGARGCGGAAALQQE 165
G+ ERG PG +G RG G AAL ++
Sbjct: 2757 GVPGAPGERGEQGRPGPAGPRGEKGEAALTED 2788
Score = 37.7 bits (86), Expect = 0.014
Identities = 65/220 (29%), Positives = 78/220 (35%), Gaps = 35/220 (15%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-GNSSDPATSRLGG 95
G P D+ P RG PQ P AG+ + +PG G G D G
Sbjct: 2566 GEPGDKGSAGLPGLRGLLGPQGQPGA--AGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRG 2623
Query: 96 SRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGCP--PSPRGSRQERGANSPGRSGA 153
+G G G+ +G G A PG P +G E G PG+SGA
Sbjct: 2624 LKGER-----GVKGACGLDGEKGDK----GEAGPPGRPGLAGHKGEMGEPGV--PGQSGA 2672
Query: 154 RGCGGAAALQQEPTNFRGRPRP-------GARGTDPPGRTLPAPL-----ARPSTQPG-- 199
G G + + F G+P P G RGT G P P A P PG
Sbjct: 2673 PGKEGLIGPKGD-RGFDGQPGPKGDQGEKGERGTPGIGG-FPGPSGNDGSAGPPGPPGSV 2730
Query: 200 --RRP-GLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGR 236
R P GL GP G V GA +RG GR
Sbjct: 2731 GPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGR 2770
Score = 29.6 bits (65), Expect = 3.9
Identities = 30/94 (31%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 40 LDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99
L PL GP + P PQT+P G+ S G V S P L G RGP
Sbjct: 987 LSWRPLRGPGQEVPGSPQTLP-----GISSSQRVTGLEPGVSYIFSLTPV---LDGVRGP 1038
Query: 100 H------PTLPPGPAGSLVFPERRGSLQDRLGRA 127
P P G A + P + QD RA
Sbjct: 1039 EASVTQTPVCPRGLADVVFLPH---ATQDNAHRA 1069
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 51.6 bits (122), Expect = 1e-06
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 72/227 (31%)
Query: 36 LGSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDP------- 88
+G P P+ R GP P+ E PGS G + +P
Sbjct: 611 VGDPGMEGPMGQRGREGPMGPR-----------GEAGPPGSGEKGERGAAGEPGPHGPPG 659
Query: 89 ---ATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGC--------PPSPR 137
+ G S P P PPGP G LQ G PG PP P+
Sbjct: 660 VPGSVGPKGSSGSPGPQGPPGPVG----------LQGLRGEVGLPGVKGDKGPMGPPGPK 709
Query: 138 GSRQERG----------------ANSPGRSGARGCGGAAALQQEPTNFRGRP-RPGARGT 180
G + E+G PG GA G G Q P +G PG RG
Sbjct: 710 GDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDG-HQGPRGEQGLTGMPGIRG- 767
Query: 181 DPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQG 227
PPG PS PG+ PGL P GP+G T P +G
Sbjct: 768 -PPG---------PSGDPGK-PGL---TGPQGPQGLPGTPGRPGIKG 800
Score = 50.4 bits (119), Expect = 2e-06
Identities = 65/194 (33%), Positives = 75/194 (38%), Gaps = 38/194 (19%)
Query: 35 ILGSPLDRNPLPGPER-------RGPRPPQTIP-TLFLAGVFSETEAPGSS-THVGAGNS 85
+ G P R P PGP GP+ PQ +P T G+ E APG T G+
Sbjct: 759 LTGMPGIRGP-PGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSML 817
Query: 86 SDPATSRLGGSRGPH-PTLPPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERG 144
+ P G+ GP P PGPAG P Q+ L PG PP PRG G
Sbjct: 818 TVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGH----QEVLNLQGPPG-PPGPRGPP---G 869
Query: 145 ANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAP---LARPSTQPGRR 201
+ PG G RG G G P P PPG L L+ P PG
Sbjct: 870 PSIPGPPGPRGPPG-----------EGLPGP----PGPPGSFLSNSETFLSGPPGPPG-P 913
Query: 202 PGLGRAASPLGPRG 215
PG P GPRG
Sbjct: 914 PGPKGDQGPPGPRG 927
Score = 40.0 bits (92), Expect = 0.003
Identities = 41/149 (27%), Positives = 54/149 (36%), Gaps = 15/149 (10%)
Query: 73 APGSSTHVGA----GNSSDPATSRLGGSRG-PHPTLPPGPAGSLVFPERRGSLQDRLGRA 127
+PG +G+ G+ P T + G G P P P G GS+ P G + G+
Sbjct: 568 SPGPKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPM----GQR 623
Query: 128 SRPGCPPSPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTL 187
R G P G R E G G G RG G P G P P +
Sbjct: 624 GREG----PMGPRGEAGPPGSGEKGERGAAGEPG-PHGPPGVPGSVGPKGSSGSPGPQGP 678
Query: 188 PAPLARPSTQ-PGRRPGLGRAASPLGPRG 215
P P+ + PG+ P+GP G
Sbjct: 679 PGPVGLQGLRGEVGLPGVKGDKGPMGPPG 707
Score = 35.8 bits (81), Expect = 0.054
Identities = 52/185 (28%), Positives = 60/185 (32%), Gaps = 15/185 (8%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
G P P P GP P +P V + PG G S P G
Sbjct: 824 GPPGAMGPPGPPGAPGPAGPAGLPGH--QEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGP 881
Query: 97 RGPHPTLPPGPAGSLVFPERRGSLQDRLGRASRPGC-----PPSPRGSRQERGANSPGRS 151
G PPGP GS + L G PG PP PRG + E+G PG S
Sbjct: 882 PGEGLPGPPGPPGSFL-SNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGL--PGFS 938
Query: 152 GARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPS-TQPGRRPGLGRAASP 210
+ LQ P G P P D +P L PS G + P
Sbjct: 939 TSGSSSFGLNLQGPP----GPPGPQGPKGDKGDPGVPGALGIPSGPSEGGSSSTMYVSGP 994
Query: 211 LGPRG 215
GP G
Sbjct: 995 PGPPG 999
Score = 29.6 bits (65), Expect = 3.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 104 PPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQERG 144
PPG G + P +G + G PG PP PRG + E+G
Sbjct: 1439 PPGQKGEMGTPGPKGD-RGPAGPPGHPG-PPGPRGHKGEKG 1477
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.138 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,636,099
Number of Sequences: 37866
Number of extensions: 1407021
Number of successful extensions: 11333
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 1332
Number of HSP's that attempted gapping in prelim test: 7560
Number of HSP's gapped (non-prelim): 3728
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.