Guide to the Human Genome
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Name: LOC100131583 Sequence: fasta or formatted (208aa) NCBI GI: 169177938
Description:

PREDICTED: similar to chromosome 9 open reading frame 147

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         28           3
 C cysteine            2.9          6           1
 D aspartate           0.5          1           1
 E glutamate           6.7         14           2
 F phenylalanine       1.0          2           2
 G glycine             6.2         13           3
 H histidine           3.4          7           1
 I isoleucine          0.5          1           1
 K lysine              2.4          5           1
 L leucine             8.2         17           2
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline            14.4         30           2
 Q glutamine           3.8          8           1
 R arginine           14.4         30           2
 S serine              6.2         13           1
 T threonine           6.7         14           2
 V valine              4.8         10           2
 W tryptophan          1.9          4           1
 Y tyrosine            1.4          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to chromosome 9 open reading fra... 
LOC643355             0.049   PREDICTED: hypothetical protein 
LOC643355             0.049   PREDICTED: hypothetical protein 
LOC643355             0.046   PREDICTED: hypothetical protein 
SRRM1                 0.034   serine/arginine repetitive matrix 1 
LOC727804             0.034   PREDICTED: hypothetical protein 
LOC100131102          0.029   PREDICTED: hypothetical protein 
ZNF469                0.029   zinc finger protein 469 
SH3RF1                0.024   SH3 domain containing ring finger 1 
ASXL3                 0.024   additional sex combs like 3 
FLJ22184              0.024   PREDICTED: hypothetical protein LOC80164 
HNRPDL                0.024   heterogeneous nuclear ribonucleoprotein D-like [Homo...
OTUD7A                0.024   OTU domain containing 7A 
TTLL8                 0.024   tubulin tyrosine ligase-like family, member 8 [Homo...
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
LOC100287499          0.022   PREDICTED: hypothetical protein 
LOC100287499          0.022   PREDICTED: hypothetical protein XP_002343643 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
KCNH3                 0.022   potassium voltage-gated channel, subfamily H (eag-re...
LOC441617             0.019   PREDICTED: similar to hCG1820409 
LOC441617             0.019   PREDICTED: similar to hCG1820409 
LOC100292801          0.019   PREDICTED: hypothetical protein 
LOC100290691          0.019   PREDICTED: hypothetical protein XP_002347934 
LOC100131102          0.019   PREDICTED: hypothetical protein 
LOC100288156          0.019   PREDICTED: hypothetical protein XP_002344202 
LOC100131102          0.019   PREDICTED: hypothetical protein 
LOC644578             0.019   PREDICTED: similar to hCG2040199 
ARL6IP4               0.019   SRp25 nuclear protein isoform 3 
LOC644578             0.019   PREDICTED: similar to hCG2040199 
LOC100130360          0.019   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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